Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1276 ATGGGAGGGTGTTGGTGCTGGAGTTCATCTTCTGATATTGTTTCTCCAAGCATTGCTGGACATCTTAGTACTGAGATATCCCAGACAACAAGTAAGTCGATATCGTCATCGGGAACTAGCAACACTTCCGGGAACAGCAGATTCTCTGTAGCAAGTGGTGATGAAAGTTACCCGAACGGGAAAATTTTGCCCACTCCGAACTTGAGGATCTTCAGTTTTGCTGAGCTGAAAAGTGCAACCAAAAATTTCAGATCGGACACTGTGCTTGGTGAGGGTGGTTTCGGAAAAGTCTTCAAAGGTTGGATTGAGGAGAAAGTGCCCGGAAAGAGTGGAAATCAGACGGTAATTGCTGTCAAAAAGTTGAAAACGGAGAGCCTCCAAGGATATGAGGAGTGGGAGTCGGAAGTGAATTTTTTGGGGATGATTTCTCATCTGAATTTGGTAAAGCTGTTGGGATATTGCTGGGAGGACGAAGAGCTACTCCTTGTTTATGAGTTCATGCAAAAGGGCAGCTTGGAAAACCATCTATTTGGAAGGGGTGCAGCTGTTCAGCCACTAACATGGGATAAAAGGCTTAAAATTGCCATAGGAGCAGCTCGAGGTCTAGCATTTTTGCACGCATCGGACAAACACGTAATTTACCGAGATTTCAAGGCCTCAAATATACTGCTAGATGGGTCTTTTACAGCAAAGATATCGGATTTTGGCTTGGCTAAACTTGGTCCCTCAGCAAGTAAATCACATGTGACCACTCGTGTTATGGGCACTTATGGTTATGCTGCTCCAGAATATGTAGCTACAGGGCATCTGTATTTCAAAAGTGATGTGTACGGATTTGGGGTTGTTTTGGCCGAGATACTGACTGGACTAAGAGCTTTGGACACAAATCGTCCAACTGGAAAACATAATCTAGTCGAGTGGATAAAACCATATTTATCGGACAGAAGGAAGTTGAAGACCGTAATGGATTCTCGCTTAGAAGGGGAATATCCATCCAAATCCGCCCTACAAATAGCACGTTTATCTCTACATTGTATTGAACAAGAACCGAAAAACCGGCCCACTATGAAAGAGGTTGTGGAGACATTGGAACGGATCGAGTCTGTTAAGGAAAGACCAAGAGAGCCTAGGATTCGATCTAGATCATATCCTGTCCAACATCATCTTGGTCCTCAATTGTTGAACTACCGTTCACCACATCAGCAATCGCCTAGTGTTAGATAG 1224 44.04 MGGCWCWSSSSDIVSPSIAGHLSTEISQTTSKSISSSGTSNTSGNSRFSVASGDESYPNGKILPTPNLRIFSFAELKSATKNFRSDTVLGEGGFGKVFKGWIEEKVPGKSGNQTVIAVKKLKTESLQGYEEWESEVNFLGMISHLNLVKLLGYCWEDEELLLVYEFMQKGSLENHLFGRGAAVQPLTWDKRLKIAIGAARGLAFLHASDKHVIYRDFKASNILLDGSFTAKISDFGLAKLGPSASKSHVTTRVMGTYGYAAPEYVATGHLYFKSDVYGFGVVLAEILTGLRALDTNRPTGKHNLVEWIKPYLSDRRKLKTVMDSRLEGEYPSKSALQIARLSLHCIEQEPKNRPTMKEVVETLERIESVKERPREPRIRSRSYPVQHHLGPQLLNYRSPHQQSPSVR 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9756176 9758875 - Conep12aG0131700.1 Cone12ag1276 450120

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1276 407 MobiDBLite consensus disorder prediction 30 53 - -
Cone12ag1276 407 FunFam Serine/threonine-protein kinase BIK1 50 166 - -
Cone12ag1276 407 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone12ag1276 407 Gene3D Phosphorylase Kinase; domain 1 67 166 - -
Cone12ag1276 407 ProSitePatterns Protein kinases ATP-binding region signature. 89 120 IPR017441 GO:0005524(InterPro)
Cone12ag1276 407 MobiDBLite consensus disorder prediction 30 55 - -
Cone12ag1276 407 FunFam Serine/threonine-protein kinase PBS1 167 381 - -
Cone12ag1276 407 Gene3D Transferase(Phosphotransferase) domain 1 167 382 - -
Cone12ag1276 407 PANTHER OS01G0588500 PROTEIN-RELATED 61 367 IPR050823 -
Cone12ag1276 407 ProSiteProfiles Protein kinase domain profile. 83 366 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag1276 407 CDD STKc_IRAK 89 366 - -
Cone12ag1276 407 MobiDBLite consensus disorder prediction 370 407 - -
Cone12ag1276 407 Pfam Protein tyrosine and serine/threonine kinase 86 363 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone12ag1276 407 SUPERFAMILY Protein kinase-like (PK-like) 63 364 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1276 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1276 Cone-Chr12:9756176 Cone9ag1621 Cone-Chr9:11559669 6.65E-155 dispersed
Cone6ag0888 Cone-Chr6:4541615 Cone12ag1276 Cone-Chr12:9756176 9.92E-44 dispersed
Cone12ag0862 Cone-Chr12:7722427 Cone12ag1276 Cone-Chr12:9756176 5.95E-33 wgd
Cone12ag1276 Cone-Chr12:9756176 Cone3ag1248 Cone-Chr3:31298386 1.03E-183 wgd
Cone12ag1276 Cone-Chr12:9756176 Cone7ag1938 Cone-Chr7:12374215 5.37E-34 wgd
Cone12ag1276 Cone-Chr12:9756176 Cone8ag1330 Cone-Chr8:10751564 1.04E-257 wgd
Cone12ag1276 Cone-Chr12:9756176 Cone8ag0892 Cone-Chr8:8700114 3.30E-141 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g292 . . . . . . . . . Cmo11g01785 . . . . . Cpe04g00630 . Bhi05g01584 . . . . . . Cla02g00348 . . . . . . Cone12ag1276 Cone8ag1330 Cone3ag1248 . . Csa07g00185 . Cme01g01148 . Blo13g00474 . . . . . Bma08g00718 . . . Cma11g01334 Cma19g00797 Car11g01412 . . . . . . . . . . . . . . . . . Lsi11g01284 . Chy01g00595 Cme11g01308
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81980 PF01156 IU_nuc_hydro 1.60E-77 No_clan Cone PK