Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1281 ATGGGGCGTTGGGAAAGTGTGGTTATAGGATTTCCAATCACAAGCAATCATCTACAAGTCTCTGCTCATTCTGATCTCTGTAACAACAGATCTTCATCTTCTTCCACATTATTCTCATTTTCAAAGCCCTTGCCATCACTACTTGTCTCGCCGTCAGGCAAGAGATTCCAAGCTTGTGGCGGGAAATCGATCACACGTCTCAGGCCGCTACTGGCTCTGCATCAGAGTGGAAAGTCTGAAGTCGATGGTGATGATCAGCTGCCGAGGCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAAAAAGAGGTACCCCTTACGGCACCGAAAATCCTGCGATAATATCGTCGTGCATTGTTGGTCTCCTTACAGGCGTAGGCGTCGTCCTCTTCAATAACGCAGTGCATGAGATACGCGACTTGGTCTGGGATGGTATTCCATACAGAGGAGCGTCATGGTTGAGAGAAGAGCCCATTCAAGACACCTGGAAACAAATCGTTTTGATTCCAGCTTGTGGCGGTTTTCTCGTGAGCATCTTGAATTTGCTTCGCAGTGCTTTGGACGGCCAGCATAATCCTCTTCGTCCTCAACAAGACAATGATGATCCACTTGTTCGAATCGGAGTTCCAGTTTCTTTATCTAAAAATATCAAAGCTGCATTTCAACCATTTCTCAAAGCACTCTCCGCTTGCATTACCCTTGGCACAGGCAATTCCTTGGGGCCTGAAGGTCCAAGCGTTGAGATTGGTACTTCTATTGCGAAGGGCGTTTCTAACTTGTTCGATAAAAGCTCTCAAAGAAGACTTTCTTTGGTTGCTGCAGGGTCAGCTGCCGGGATCTCTTCTGGTTTCAATGCTGCTGTTGCTGGCTGTTTTTTCGCTATAGAATCTGTCTTGTGGCCAACACCAGGAGATTCTTCTTTGTCTCTTACAAATACGACTTCTATGGTTATACTTAGTGCTGTTATTGCTTCTGTAGTTTCAGAAGTTGGTCTTGGTTCTGAACCTGCCTTTAAGGTTCCGGGATATGACTTTCGCTCACCCAGTGAGCTTCCTCTCTATTTGTTGCTGGGTGTCCTGTGCGGCTTGGTTTCATTGACCTTATCTAGGTGCACCTCATACATGTTGGAAACAGTAGAAAATCTTCACAAGGCTAGAGGGATACCAAAGACTTTCTTCCCTGTCATCGGTGGATTAGCTACTGGACTGCTAGCCTTCGCATATCCTGAAATTCTTTACTGGGGTTTTGAAAATGTTGATATCTTATTGGAATCAAGACCATTTGTGAAAGGCCTTCCAGCTGATTTATTGGCTCAACTTGTAGTTGTCAAGATATTTGCATCCTCCTTGTGCAGGGCTTCTGGATTGGTAGGAGGCTACTATGCCCCATCCCTCTTTATTGGTGCAGCAACAGGAATGGCATATGGAAAGTTCATTGGTATTCTAGTCGCTGATCCCAACCCCATAATTCAGCTTTCAATCTTTGAAGTGGCATCACCACAAGCATATGGCCTGGTTGGAATGGCTGCTACTCTTGCAGGGGTTTGTCAGGTCCCTCTTACTGCAGTCTTACTACTTTTTGAGCTGACACAAGATTACCGAATAGTTCTTCCTCTACTCGGAGCAGTAGGAGTTTCTTCATGGATTACATCTGGACAGACAAGGAGATCTGATGTGGAGACAGTTAAGAAACGCAAGATGATATAG 1746 45.02 MGRWESVVIGFPITSNHLQVSAHSDLCNNRSSSSSTLFSFSKPLPSLLVSPSGKRFQACGGKSITRLRPLLALHQSGKSEVDGDDQLPRQEEEEEEEEEEEEEEEEEEEEEEEGKRGTPYGTENPAIISSCIVGLLTGVGVVLFNNAVHEIRDLVWDGIPYRGASWLREEPIQDTWKQIVLIPACGGFLVSILNLLRSALDGQHNPLRPQQDNDDPLVRIGVPVSLSKNIKAAFQPFLKALSACITLGTGNSLGPEGPSVEIGTSIAKGVSNLFDKSSQRRLSLVAAGSAAGISSGFNAAVAGCFFAIESVLWPTPGDSSLSLTNTTSMVILSAVIASVVSEVGLGSEPAFKVPGYDFRSPSELPLYLLLGVLCGLVSLTLSRCTSYMLETVENLHKARGIPKTFFPVIGGLATGLLAFAYPEILYWGFENVDILLESRPFVKGLPADLLAQLVVVKIFASSLCRASGLVGGYYAPSLFIGAATGMAYGKFIGILVADPNPIIQLSIFEVASPQAYGLVGMAATLAGVCQVPLTAVLLLFELTQDYRIVLPLLGAVGVSSWITSGQTRRSDVETVKKRKMI 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9785923 9789606 + Conep12aG0132200.1 Cone12ag1281 450125

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1281 581 MobiDBLite consensus disorder prediction 75 122 - -
Cone12ag1281 581 SUPERFAMILY Clc chloride channel 127 571 IPR014743 -
Cone12ag1281 581 PRINTS Chloride channel signature 532 551 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone12ag1281 581 PRINTS Chloride channel signature 469 489 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone12ag1281 581 PRINTS Chloride channel signature 239 258 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone12ag1281 581 PRINTS Chloride channel signature 290 309 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone12ag1281 581 PRINTS Chloride channel signature 514 530 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone12ag1281 581 PANTHER CHLORIDE CHANNEL PROTEIN CLC-E 83 574 IPR050368 GO:0009535(PANTHER)
Cone12ag1281 581 MobiDBLite consensus disorder prediction 86 113 - -
Cone12ag1281 581 CDD Voltage_gated_ClC 134 560 - -
Cone12ag1281 581 Gene3D Clc chloride channel 119 580 - -
Cone12ag1281 581 Pfam Voltage gated chloride channel 236 563 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone12ag1281 581 Coils Coil 87 116 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1281 K03281 - - vvi:100253731 627.861
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1281 Cone-Chr12:9785923 Cone8ag1351 Cone-Chr8:10839315 4.35E-268 dispersed
Cone12ag1281 Cone-Chr12:9785923 Cone14ag1276 Cone-Chr14:10209468 7.43E-123 wgd
Cone12ag1281 Cone-Chr12:9785923 Cone15ag1302 Cone-Chr15:10173264 1.40E-122 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g331 . . . . Bpe07g00690 . . Bma12g00894 . . Cma02g00313 . Car02g00193 . . . . . . . . . . . . . . . . . . Cone12ag1281 . . . . . . . . . . . . . . . . Cmo02g00307 . . . . . . Cpe05g01327 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010114 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 1 33