Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1283 ATGGCAAAACAAGCTGCAAGCATGTGGATGGCATTTCAGACAGAGTCCGATAATGTTGAAGACTATGCTTCAGAGGTCAATAGGTCAACGTTAGAGGATGAAATAGCAGAGAGAACAGCAGACTGGGGAGTGATAGTGAAGCAAGAAGAAGGGCAGACTAGTTTTAAGGCCATAGTAGGGAACATGAAGAGAGAATCAGGTGAAGGGAATAGAAGTAAGAATTCAACGTCGGTGAGGTATGGAGGTGGAGTCGTATCGACTAGAACGTCGGAAGAGTCGAATTCTGGTGAGCCCGACCCAAGTTCTTTTCCGAGAGTATCGCAAGAGTTGAAAGATGCATTAGCAACTCTTCAACAGACTTTTGTTGTTTCTGATGCCACAAAACCGGATTGTCCGATTGTTTATGCGAGCAGTGGATTCTTTAGCATGACTGGTTATTCCCCCAAAGATGTTATTGGAAGAAACTGCCGGTTTCTGCAGGGTGCCGGAACGGACCGGAAAGAAGTGGAGAAGATCCGAGATGCGGTTAAGAACGGGAAAAATTTCTGTGGTAGGCTGTTGAACTACAAGAAAGATGGGACCCCTTTCTGGAATCTTCTAACCCTCACCCCTATAAGGGATGACAATGGCAAGAACATCAAATTCATTGGAATGCAAGTTGAGGTGAGCAAATACACAGAAGGAGTGAATGAGAAAGAATTACGTCCAAATGGATTGCCTACCTCATTAATCCGATACGATGCTCGACAGAAGGAAACGGCAATGGGGTCCATTACAGAGGTGGTTCAAACCGTAAAACATCCACAACCTCAAATCCAAACTGATCAAGAGGCAGAAAAATTTGATCTCAATTATGTTCTGCCAAAATCTGTTCATGAAACTGAAAATTTTAGTACACCTGGCAGACAAACTGCACCCAGGAGACAAACTCCTCAACAGGACCACACGGGTGACTTGTCCATTGAAGATCCCAGCAAAAAATCGAGACTGTCAAGCCGCATTTCCTTGACGGGGTTTAAGAGGAGGTCCTTAGGATCAGTAGTGAAACATGAACAGATCCTTGAACCAGAAGTTTTGATGACTAAGGATGAAGAACGGTCAGACAGTTGGGATCGTTCGGAAAGAGAAAGGGATATTAGGCAAGGAATTGATTTAGCAACCACATTGGAACGTATTGAGAAAAACTTTGTGATTACTGATCCTAGATTACCCGATAATCCCATCATTTTCGCATCTGATAGCTTTCTTGAACTGACTGAATATACACGTGAAGAGATTTTGGGAAGAAACTGTAGGTTTCTTCAGGGGTCCGAAACGGATCAAGCAACTGTCTCAAGAATAAAAGATGCTATTAGACAGCAAACAGAAGTCACTGTCCAGTTGATAAACTATACTAAGAGTGGTAAGAAGTTCTGGAATTTATTTCACTTGCAACCGATGCGTGACCATAAGGGTGAGCTTCAATATTTCATAGGTGTACAACTTGACGGAAGTGATCATGTAGAGCCTCTAAGAAACCGTTTATCCGAGAGAACCGAGCTACAAAGTGCTAAGTTGGTCAAAGCAACGGCGGAAAATATCAACGAGGCTGTGCGTGAACTTCCCGATGCAAATTCGAGACCAGAAGATTTATGGGCAATTCATTCCGAGCCGGTTTTGCCGAGGCCTCATAAGAAGGACAGTTCTTCTTGGAAAGCAATACAAAAGATCACAGCAAGGGATGAATCGGTCGGGATCCACCATTTCAAGCTGATAAAACAATTGGGGAGTGGGGACACTGGCAGTGTTCACTTGGTTGAATTGCGAGGTACCGGTGAAGTTTTCGCTATGAAGGCGATGGATAAGGCGGTAATGTTCAGTCGAAATAAGGTCCATAGAGCATGCATTGAGAGGGAAGTGATTTCACATCTGGATCATCCATTTCTCCCGACCCTCTACTCTTCATTTCAGACTCCGACACATGTTTGTTTGATTACCGACTTTTGTCCCGGCGGAGAGTTATTTGCCTTGCTCGATCATCAGCCGTTGAAAATGTTCAAAGAAGATTCTGCAAGGTTCTATGCCGCAGAGGTTGTCATTGGTTTGGAATATCTTCACTGTTTAGGATATATATATCGTGACCTGAAACCCGAAAACATTCTACTCCAAAAGGATGGACATGTTGTCTTAACAGACTTTGATTTATCATTCAAGACATCATGTAAACTCCAGATTATAAACCCTCCTGTGCCAAGAAAGAAGAGGAGGTCGAGGAATAAACCACCACCAATAATCGTTGCAGAACCGGTTTCTCAGTCAAATTCATTTGTCGGAACAGAGGAGTACATTGCTCCTGAGATTATTATGGGTGCAGGACATGGTAGTTCTATTGATTGGTGGGCTCTTGGTATTTTGCTGTATGAGATGCTGTATGGAAGAACACCCTTTAGGGGAAGGAATAGGAAGAAGACATTTGCCAATATCTTGCACAAAAATCTTACCTTTCCCAGTAGCATTCCGGTAAGTCTAGCAGCAAGACAGCTGATAAATGCTCTACTGCAAAGAGACCCAGCACAACGTTTAGGAGCAGATACTGGTGCCAATGAAATCAAACAACACCCATTTTTCCGTGGCATCAACTGGGCACTAATCCGTTGCATGAAGCCACCCCAATTAGATGCCCCTCTTCAATTTGATTGA 2679 43.52 MAKQAASMWMAFQTESDNVEDYASEVNRSTLEDEIAERTADWGVIVKQEEGQTSFKAIVGNMKRESGEGNRSKNSTSVRYGGGVVSTRTSEESNSGEPDPSSFPRVSQELKDALATLQQTFVVSDATKPDCPIVYASSGFFSMTGYSPKDVIGRNCRFLQGAGTDRKEVEKIRDAVKNGKNFCGRLLNYKKDGTPFWNLLTLTPIRDDNGKNIKFIGMQVEVSKYTEGVNEKELRPNGLPTSLIRYDARQKETAMGSITEVVQTVKHPQPQIQTDQEAEKFDLNYVLPKSVHETENFSTPGRQTAPRRQTPQQDHTGDLSIEDPSKKSRLSSRISLTGFKRRSLGSVVKHEQILEPEVLMTKDEERSDSWDRSERERDIRQGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGSETDQATVSRIKDAIRQQTEVTVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHVEPLRNRLSERTELQSAKLVKATAENINEAVRELPDANSRPEDLWAIHSEPVLPRPHKKDSSSWKAIQKITARDESVGIHHFKLIKQLGSGDTGSVHLVELRGTGEVFAMKAMDKAVMFSRNKVHRACIEREVISHLDHPFLPTLYSSFQTPTHVCLITDFCPGGELFALLDHQPLKMFKEDSARFYAAEVVIGLEYLHCLGYIYRDLKPENILLQKDGHVVLTDFDLSFKTSCKLQIINPPVPRKKRRSRNKPPPIIVAEPVSQSNSFVGTEEYIAPEIIMGAGHGSSIDWWALGILLYEMLYGRTPFRGRNRKKTFANILHKNLTFPSSIPVSLAARQLINALLQRDPAQRLGADTGANEIKQHPFFRGINWALIRCMKPPQLDAPLQFD 892
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9795258 9800400 + Conep12aG0132400.1 Cone12ag1283 450127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1283 892 ProSiteProfiles PAS repeat profile. 381 454 IPR000014 -
Cone12ag1283 892 ProSiteProfiles Protein kinase domain profile. 582 869 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag1283 892 MobiDBLite consensus disorder prediction 71 102 - -
Cone12ag1283 892 ProSiteProfiles PAC domain profile. 455 509 IPR000700 -
Cone12ag1283 892 MobiDBLite consensus disorder prediction 291 328 - -
Cone12ag1283 892 CDD STKc_phototropin_like 580 892 - -
Cone12ag1283 892 Pfam PAS domain 404 496 IPR000014 -
Cone12ag1283 892 Pfam PAS domain 127 223 IPR000014 -
Cone12ag1283 892 FunFam LOV domain-containing protein 581 665 - -
Cone12ag1283 892 FunFam Putative LOV domain-containing protein 666 881 - -
Cone12ag1283 892 NCBIfam PAS domain S-box protein 132 223 IPR000014 -
Cone12ag1283 892 NCBIfam PAS domain S-box protein 406 499 IPR000014 -
Cone12ag1283 892 Pfam Protein kinase domain 583 869 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag1283 892 CDD PAS 396 496 IPR000014 -
Cone12ag1283 892 MobiDBLite consensus disorder prediction 291 318 - -
Cone12ag1283 892 FunFam Putative LOV domain-containing protein 120 276 - -
Cone12ag1283 892 SUPERFAMILY PYP-like sensor domain (PAS domain) 127 219 IPR035965 -
Cone12ag1283 892 ProSitePatterns Serine/Threonine protein kinases active-site signature. 703 715 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone12ag1283 892 ProSiteProfiles PAS repeat profile. 106 155 IPR000014 -
Cone12ag1283 892 MobiDBLite consensus disorder prediction 59 106 - -
Cone12ag1283 892 FunFam LOV domain-containing protein 370 534 - -
Cone12ag1283 892 SUPERFAMILY Protein kinase-like (PK-like) 558 884 IPR011009 -
Cone12ag1283 892 SMART serkin_6 582 869 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag1283 892 Gene3D PAS domain 120 284 - -
Cone12ag1283 892 ProSiteProfiles PAC domain profile. 180 234 IPR000700 -
Cone12ag1283 892 SMART pas_2 383 452 IPR000014 -
Cone12ag1283 892 SMART pas_2 108 177 IPR000014 -
Cone12ag1283 892 Gene3D Phosphorylase Kinase; domain 1 581 665 - -
Cone12ag1283 892 PANTHER FLIPPASE KINASE 1-RELATED 526 886 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cone12ag1283 892 SUPERFAMILY PYP-like sensor domain (PAS domain) 397 496 IPR035965 -
Cone12ag1283 892 SMART pac_2 183 225 IPR001610 -
Cone12ag1283 892 SMART pac_2 458 500 IPR001610 -
Cone12ag1283 892 Gene3D Transferase(Phosphotransferase) domain 1 666 882 - -
Cone12ag1283 892 Gene3D PAS domain 370 534 - -
Cone12ag1283 892 CDD PAS 133 222 IPR000014 -
Cone12ag1283 892 ProSitePatterns Protein kinases ATP-binding region signature. 588 611 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1283 Cone-Chr12:9795258 Cone1ag0687 Cone-Chr1:6419048 0 dispersed
Cone9ag0388 Cone-Chr9:1773687 Cone12ag1283 Cone-Chr12:9795258 8.80E-14 dispersed
Cone10ag1196 Cone-Chr10:8825735 Cone12ag1283 Cone-Chr12:9795258 0 wgd
Cone12ag1283 Cone-Chr12:9795258 Cone3ag1262 Cone-Chr3:31437606 0 wgd
Cone12ag1283 Cone-Chr12:9795258 Cone8ag1349 Cone-Chr8:10827919 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81981 PF09734 Tau95 5.40E-30 CL0123 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1283 K20715 - cit:102626333 1298.49