Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1284 ATGGTTATTACAAACACTTTCGTAATCAGCATCATTCTTTTTGCTAATATTGCATCCATATCATCCCTCAAACAACTAAGATTCAACTTCACCGGATTCGACGAAGGAAGAAACCACTTTTCATTCCAATTCTCCGGAAACTCCTCCATAGACGGAGGAGCTCTTCAACTAACACCAGACACAACAAACGACGGCCTCGACTTTGGCTTCCGGAACGAATCCGGCCGGATATTCTATCACCAGCCTTTCAAGCTCTGGTCCTCCCCTTCCAATATCAACGATAAAGTACAAACCGACATTGCTTCCTTCAACTCCACCTTCCTCATGAACATTTACAGAAAGTCAACGTGGGATGCAGGTGAAGGGTTTGCTTTCCTCATAGCCCCTGATAAGTACTACTTACCGGATCAAAGCGCGGGTCAATGGCTAGGTCTGACCAATGAAACAACAGATGGGCACAAAGAGAATCAATTTGTTGCTATAGAATTTGACACAGAGGAGCAAGAATTTGACCCAGATGATAATCACATAGGGCTTAACATCAACTCTATAAGATCAAACAAGACAGTGTCTCTACGCGATTATGATATAGAGATTTCTCCACAGGACATGAGGGACATGGGGGTTAAATATAGAGTTTGGGTTCAGTATAATGGGAAATTGAAAATCATAGAGGTTTATATGGCTAGAGAGAATGAGTCCAAGCCTGATAAGCCTGTTCTTAATGAGACCATTGATTTGAGTAATTTTGTCAAACAGGATTCCTACTTTGGATTTGCTGCTTCAACCGGCGACCCTGAGATTCAACTTAACTGCGTTTTGGCATGGAGTTTGGAGATTGATGAGATTAAAGATGAGAAGGATTTACGGTGGCTGAAGATTGCAGCTGGAGTTGGGATTCCAGTTTTGTTGGTGTTAGTTTTATGTGGAGTGAGATTGAGTTATGTTTATAGGAAGATGAAGAAGAGAAGAAGGATTGATGGTGAGGAAGTCGATGTAGTGGGTACGTTGAAAAGATTGCCTGGGATGCCTAGAGAATTTAAGTATAAGGAATTAAAGAAGGCAACTAAGAATTTTGATCCAAGTATGGTTCTGGGCAAAGGTGGATTTGGTGTTGTTTATAAGGGGACTTTACGTGAAAATATAAATAATACTAGTAATGATCGTAACACGAACATTGTTACTGATCAAGTGGCTGAAGTTGCTGTGAAGATATTCTCAAGGAATAGTATAAAGGAGGGTATCGACGATTTCTTGGCGGAGCTCACTATTATTCATCGCCTCCGGCATAAACATCTTGTTCGATTAGTCGGTTGGTGTTATGAGAAAAAGAAGCTTCTATTGGTGTATGATTTCATGCCGAATGGAAGCCTCGAAAAGCACTTATACAATAATCATAATCCGACACTAAACTGGAGACATCGATGCAAAATACTAGAAGGTGTAGCCTCGGCCTTACATTACATACACAATGAATACGACCAGAAAGTCCTTCACCGTGACCTCAAAGCAAGCAACATTATGCTCGACTCCGACTTCAATGCTCGTCTAGGCGATTTTGGGCTGGCCCGAGCCCTGGACCCAGAAAGAAACTCCTATGCAGACATAAGGCTAGGTGGGGTACCGGGGACCGTGGGTTATGTTGCTCCGGAATGTTTCCACACAGGCCGGGCCACACCCGAGTCCGATGTGTTCGGGTTCGGTGCGGTGGTGCTTGAGGTGGTGTGTGGACGAACGCCCTGGGTGGGGGTCCCACATGGAGAGAACGTGTACACTTTGGTTGATTGGGTTTGGATGCTACATAGAGAAGGGAGGATTGAGGAAGCAGTGGATCAACGGTTGAGATCTAGCAATGTTGCTATTGATGAAGCGAAAAGGCTTTTGCTTTTGGGGCTGGCTTGTTCGCATCCGACTGCGAGTGAGAGGCCGGAGACTAAGGCGATACTGCAGATTGTTTCGGGTAATATAGAGGCTCCGAAAGTGCCTCATTTTAAGCCTGTTTTCACTTGGCCTTCATTAGCGTTTGATGAGATATGTGATTCCAATAGCGACAGTGCACTATCAAGCGTAGTAGTTTCTTCCTCATAA 2088 43.92 MVITNTFVISIILFANIASISSLKQLRFNFTGFDEGRNHFSFQFSGNSSIDGGALQLTPDTTNDGLDFGFRNESGRIFYHQPFKLWSSPSNINDKVQTDIASFNSTFLMNIYRKSTWDAGEGFAFLIAPDKYYLPDQSAGQWLGLTNETTDGHKENQFVAIEFDTEEQEFDPDDNHIGLNINSIRSNKTVSLRDYDIEISPQDMRDMGVKYRVWVQYNGKLKIIEVYMARENESKPDKPVLNETIDLSNFVKQDSYFGFAASTGDPEIQLNCVLAWSLEIDEIKDEKDLRWLKIAAGVGIPVLLVLVLCGVRLSYVYRKMKKRRRIDGEEVDVVGTLKRLPGMPREFKYKELKKATKNFDPSMVLGKGGFGVVYKGTLRENINNTSNDRNTNIVTDQVAEVAVKIFSRNSIKEGIDDFLAELTIIHRLRHKHLVRLVGWCYEKKKLLLVYDFMPNGSLEKHLYNNHNPTLNWRHRCKILEGVASALHYIHNEYDQKVLHRDLKASNIMLDSDFNARLGDFGLARALDPERNSYADIRLGGVPGTVGYVAPECFHTGRATPESDVFGFGAVVLEVVCGRTPWVGVPHGENVYTLVDWVWMLHREGRIEEAVDQRLRSSNVAIDEAKRLLLLGLACSHPTASERPETKAILQIVSGNIEAPKVPHFKPVFTWPSLAFDEICDSNSDSALSSVVVSSS 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9803573 9806026 - Conep12aG0132500.1 Cone12ag1284 450128

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1284 695 SMART serkin_6 359 651 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag1284 695 Gene3D Phosphorylase Kinase; domain 1 344 452 - -
Cone12ag1284 695 Pfam Protein tyrosine and serine/threonine kinase 364 594 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone12ag1284 695 Pfam Legume lectin domain 26 291 IPR001220 GO:0030246(InterPro)
Cone12ag1284 695 SUPERFAMILY Concanavalin A-like lectins/glucanases 26 291 IPR013320 -
Cone12ag1284 695 SUPERFAMILY Protein kinase-like (PK-like) 341 651 IPR011009 -
Cone12ag1284 695 ProSitePatterns Serine/Threonine protein kinases active-site signature. 497 509 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone12ag1284 695 CDD STKc_IRAK 365 652 - -
Cone12ag1284 695 FunFam probable L-type lectin-domain containing receptor kinase S.5 453 657 - -
Cone12ag1284 695 ProSiteProfiles Protein kinase domain profile. 359 664 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag1284 695 Gene3D Transferase(Phosphotransferase) domain 1 453 671 - -
Cone12ag1284 695 PANTHER - 45 661 IPR050528 GO:0005886(PANTHER)
Cone12ag1284 695 CDD lectin_legume_LecRK_Arcelin_ConA 26 281 IPR001220 GO:0030246(InterPro)
Cone12ag1284 695 Gene3D - 24 291 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1284 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0892 Cone-Chr12:7899497 Cone12ag1284 Cone-Chr12:9803573 1.47E-238 dispersed
Cone12ag1284 Cone-Chr12:9803573 Cone8ag0925 Cone-Chr8:8917454 6.85E-240 dispersed
Cone12ag1284 Cone-Chr12:9803573 Cone8ag1348 Cone-Chr8:10823275 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g321 . . . . . . . . Cmo19g00842 Cmo11g01827 . . . . . Cpe04g00668 Cpe15g00663 Bhi05g01535 . . . . . . Cla02g00321 . . . . . . Cone12ag1284 Cone8ag1348 . . . Csa07g00223 . . . Blo13g00458 . . Bpe15g00769 . Bma03g00652 Bma08g00704 . . . Cma11g01293 Cma19g00825 Car11g01453 Car19g00640 . . . . . . . . . . . . . . . . Lsi11g01317 . Chy01g00557 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006270 1 1 1 3 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81982 PF13962 PGG 1.00E-26 No_clan Cone PK