Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1288 ATGGCTTTTTCTTCATTTTCTAAGATTGCCCTCCTTGGCTTCTCCGTGAGTCTCTTCATCGTCCGTATTCTAGCTCATGATTTCTCAATCGTGGGTTACTCCCCAGAACACTTGACCTCCATGGATAGCATCATAAGACTATTCGAATCATGGATGTCAAGACATGGTAAAACTTACAAAAGCGTCGAAGAGAAGTTGGAAAGGTTTGAAATATTCATGGAAAATCTGAAGCACATAGATGAGAGGAACAAGAAACAAGCTAGCTATTGGCTTGGGTTGAATGAATTTGCAGACATGAGCCATGAAGAGTTTAAGAGCATGTATTTGGGATTGAATGCTGAGCTTCCCAGAAAAAGGTCTTCCTCTTCTTCAGAATTCAGCTACAGAGATGGAGTAGATTTGCCCAGGACCGTGGATTGGAGAAAGAAAGGAGCAGTTACTCCAGTCAAAAACCAAGGTTCTTGTGGTAGTTGTTGGGCATTTTCTACAGTAGCTTCTGTTGAAGGAATAAACCAAATCGTGACAGGAAATCTAACTTCTTTATCTGAGCAACAGTTGATAGATTGTGATAGGACTTTCAACAATGGTTGCAATGGTGGTCTTATGGATTATGCCTTTCAATTCATAATCTCTAATGGCGGACTTCACAAGGAGGATGACTATCCATATCTGATGGATGAAGGAACTTGTGAAGAAAGCAAGGAAGAATCAAAGTTAGTTACCATAACCGGTTATCAAGACGTGCCAGCAAATGATGAACAAAATTTCCTAAAAGCACTAGCCCACCAACCTCTTAGCGTAGCCATTGAAGCTTCTGGAAGGGATCTCCAATTTTATAGTGGGGGGGTATTTTCTGGACCGTGTGGAACCGATCTTGATCATGGAGTAACTGCCGTTGGATATGGGTCAACAAAGGGGGCAGACTACATCATTGTGAAGAACTCGTGGGGTTCAAAATGGGGAGAAAAAGGATACATTAGAATGAAGAGAAATACTGGCAAAACTGAAGGCCTATGTGGTATTTATAAAATGGCTTCATATCCTACCAAGAAGAAATGA 1059 41.17 MAFSSFSKIALLGFSVSLFIVRILAHDFSIVGYSPEHLTSMDSIIRLFESWMSRHGKTYKSVEEKLERFEIFMENLKHIDERNKKQASYWLGLNEFADMSHEEFKSMYLGLNAELPRKRSSSSSEFSYRDGVDLPRTVDWRKKGAVTPVKNQGSCGSCWAFSTVASVEGINQIVTGNLTSLSEQQLIDCDRTFNNGCNGGLMDYAFQFIISNGGLHKEDDYPYLMDEGTCEESKEESKLVTITGYQDVPANDEQNFLKALAHQPLSVAIEASGRDLQFYSGGVFSGPCGTDLDHGVTAVGYGSTKGADYIIVKNSWGSKWGEKGYIRMKRNTGKTEGLCGIYKMASYPTKKK 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9833913 9835428 - Conep12aG0132900.1 Cone12ag1288 450132

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1288 352 PRINTS Papain cysteine protease (C1) family signature 152 167 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cone12ag1288 352 PRINTS Papain cysteine protease (C1) family signature 294 304 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cone12ag1288 352 PRINTS Papain cysteine protease (C1) family signature 309 315 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cone12ag1288 352 CDD Peptidase_C1A 135 348 IPR039417 -
Cone12ag1288 352 Pfam Cathepsin propeptide inhibitor domain (I29) 48 104 IPR013201 -
Cone12ag1288 352 SUPERFAMILY Cysteine proteinases 44 349 IPR038765 -
Cone12ag1288 352 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 42 343 IPR013128 GO:0004197(PANTHER)|GO:0005615(PANTHER)|GO:0005764(PANTHER)|GO:0008234(InterPro)|GO:0051603(PANTHER)
Cone12ag1288 352 Gene3D Cysteine proteinases 27 351 - -
Cone12ag1288 352 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 152 163 IPR000169 -
Cone12ag1288 352 FunFam cysteine protease XCP2 27 351 - -
Cone12ag1288 352 SMART Inhibitor_I29_2 48 104 IPR013201 -
Cone12ag1288 352 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 309 328 IPR025661 -
Cone12ag1288 352 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 292 302 IPR025660 -
Cone12ag1288 352 SMART pept_c1 134 349 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cone12ag1288 352 Pfam Papain family cysteine protease 134 349 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1288 K16290 - - cit:102610106 577.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1288 Cone-Chr12:9833913 Cone17ag0859 Cone-Chr17:6816364 1.09E-131 dispersed
Cone12ag1288 Cone-Chr12:9833913 Cone3ag1253 Cone-Chr3:31375442 5.59E-111 wgd
Cone12ag1288 Cone-Chr12:9833913 Cone4ag2036 Cone-Chr4:14124480 2.35E-177 wgd
Cone12ag1288 Cone-Chr12:9833913 Cone8ag1342 Cone-Chr8:10793398 1.35E-239 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g306 . . . . . . . . . Cmo11g01798 . . . . Sed05g2142 Cpe04g00640 . Bhi05g01552 Tan02g0549 Cmetu01g0266 Lac12g0456 Hepe02g0352 . . Cla02g00332 Cam02g0341 Cec02g0342 Cco02g0346 Clacu02g0332 Cmu02g0330 Cre02g0662 Cone12ag1288 Cone8ag1342 . Cone10ag1012 . Csa07g00207 . . Blo04g00610 Blo13g00466 . Bda14g00652 Bpe15g00777 . . . . . . Cma11g01323 . Car11g01424 . . . . . . . . . . . . . . . . . Lsi11g01302 . Chy01g00573 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002657 1 2 2 0 1 1 3 1 1 2 2 2 2 2 2 2 1 3 2 2 2 2 2 2 2 2 2 2 2 2 54