Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone12ag1294 | ATGAAAGATCCAATGGACCACTGCAATTGGGCCGACTGCACTGGTGAAGATGAAAGTGAACATGGGTCATTGTCAGAACCTCCAGAAAAACAATGTGGAAATCTAAAACTTTCCGATTGGTTATCTTTCTCCATCTTGAAGTATTCTCATTTAGAATTAAACAATGGGAAAGTAATTGTTCTCGAGCAGGGACGGCCCTTACTTTCTTACCACCTTCAAGCCTTTGTTTTAAACATGAACATAATTCGGCTTCTGTCACCAATTCTTCTTTTATTGATTGGAGCTCATTCAGAAGGAGCTTCTACACCAAATGTAGTCAATGTCGGAGCTATTTTTTCATTCAACACTATTAATGGAAAAGTCTCAGAAATCGCCATCAAGGCTGCTGAGAAAGATGTTAATTCCAATCCAACCATTCTAGGCGGACGTAAATTGTCTATATCCATGCTTGACTCCAATTTCAGTGGATTCCTTGCAATTGTTGGAGCGTTGAAGTACATGGAAAGCGATACCATAGCAATAATCGGGCCACAAACCTCTGTAATGGCCCATGTCCTCTCACACCTTGCAAATGAACTCCACGTTCCTTTACTATCATTTACAGCTCTAGACCCCTTTCTTTCACCCATACAGTTTCCATATTTCGTCCAAACAGCTCCAAAAGATGAATTCCAAATGACAGCAATTGCTGACATGGTTAGTTATTACGGCTGGAGCAGGGTCATTGCAGTTTTTAGTGATGATGATTCGAGCCGAAACAGTATAAACGTGTTAGGAGACAAACTTTCCGAAAGACGCTGCAAGATTTCTTATAAAGCTGCTCTTCCACCAGACCCCACGGCAACGGTGTCTCAAGTCCAAGATGAATTGGTTAAGGTTAATATGATGGAATCTAGGGTAATTGTTCTACATACTTTCCACCGGACAGGCCTTATGGTTTTTGATGTGGCCCAAAAGCTCGGGATGATGAAAAGTGGGTATATTTGGATAACTTCTACTTGGCTGTCTACGGTTTTAGATTCAACTTCACCCCTTTCGGAAAATACTTCGAAATCTATTGAAGGAGTTCTCACTCTTCGTTCACACACACCAATTTCGAGGAAAAAATCGTCTTTTATTTCTCAATGGGATAAGCTGAGTAATGGGTCTATTGGGTTGAACCCGTATGGTTTATACGCATATGATACTGTCTGGATGATTGCATATGCCGTTAAAGAGTTATTCGATCAAGGTCGGTCCATTTCTTTCTCGGATATGAACTTGGGAGATCTTGAAGGAGGGAGTTTAAATCTTAGAGGATTAAGCATTTTCAATGAAGGAGAGCAATTGCTTAACAACATATTGAAAACCAATATGACTGGTTTAACGGGTCCTATCAAGTTCACTCCAGATAGATTTATAATACATCCTGCCTATGATATCATAAATGTAATTCAAAAGGGTTATCATCAAGTTGGATATTGGTCGAATTATTCTGGGCTCTCTGTTGTGGAGCCGGAGATACTGTATGAAAAACCGCCTAACAAATCGGTTACAAGCCAACAATTAGGCAGCATTATATGGCCCGGAAAAACAACGATAAAACCACGGGGATGGGTTTTTCCGTACAATGGAAAGGAGTTAAAGATTGGAGTTCCAGACAGAGTTAGTTATAGGGATTTTGTGTCAAGAGTGAATGGCACTGATCAAGTCCAAGGATATTGCATTGATGTTTTCCTTGCTGCCATAGCTTTGCTTCCTTATGCAGTTCCTTACAGATTCATTCTCTTTGGAGATGGTCATAAGAATCCAAGTTACTATGACCTTGTAAACATGATCCCATCCGGTGCTTTTGATGCAGTTGTTGGTGACATTGCAATTGTTACAAACCGAACAAAGATTTTGGATTTTACTCAACCTTATGTAGAATCAGGCTTAGTGGTTATTGCCCCGGTTAGAGACTCTCATTCAAGTCCGTGGGCTTTTCTGAGACCATTTACTCCCATGATGTGGGTTGTTACAGCTCTCTTCTTTTTCGTCATAGGAGCCGTCGTATGGATTCTCGAACATAGAAAAAACGACGAGTTCCGGGGCCCACCTAAGAAACAGCTCACCACAATTCTCTGGTTTAGCTTCTCCACAATGTTTTTCGCACACAGAGAAAATACAGTAAGCACACTGGGTCGAATCGTGATACTAATCTGGCTTTTTGTGGTTCTAATAATAACCTCAAGCTATACTGCTAGCTTGACATCAATGCTAACTGTTCAACAGTTATCTTCACCCATAACTGGGATTGATTCATTGATAGTTAGCACGGAACCTATAGGATTCCAGGTCGGCTCTTTCGCCCAGAACTACTTAATTGAAGAACTAAGCATCCCAAAATCCCGCCTCATTGCTCTTGGCTCGCCCGAAGAATATGCTTATGCTCTTGAAAAAGGAACTGTTGCTGCTGTAGTTGATGAACAGCCCTTTGCAGATCTATTCCTTTCAGATTATTGTAAATTCGGAGTCAGAGGCCAGATGTTCACGAAAAGTGGGTGGGGATTTGCTTTTCCTAGAGATTCTCCATTAGCCATTGATATGTCGAATGCGATTCTTACTTTATCGGAAAATGGAGAACTTCAGAGGATACATGATAAATGGTTTTCGAGAAAGGGTTGCGCTGCACAGAGCGATACTGAACTTCTTCAAGTAGAACAACTTCAATTGCAAAGCTTTTGGGGACTGTTTCTTATTTGTGGGATTACTTGTTTCCTAGCTCTGCTTGTTCATTTTTGTAGGATGTTTAAACAGTTTAGTAGATATGTTCCTGAAGAAGAAGATGAAGGAGCTGGGGCTCTTTCTAGTGACGGGTCCAGGCCCGGATCGGTTCGATTGAAAAAGATCTTGGCATTTGTGGATGAGAAGGAAGAGAGATGGAAGAGCAGGTTGAAGAGAAGACATGGTGAGATGTTAAATGATTGTTTTGGAATGGAAGAAGAATCTAGGAATGAATCCAAAGGAATACAAATCCAAATTCAATAG | 3009 | 40.84 | MKDPMDHCNWADCTGEDESEHGSLSEPPEKQCGNLKLSDWLSFSILKYSHLELNNGKVIVLEQGRPLLSYHLQAFVLNMNIIRLLSPILLLLIGAHSEGASTPNVVNVGAIFSFNTINGKVSEIAIKAAEKDVNSNPTILGGRKLSISMLDSNFSGFLAIVGALKYMESDTIAIIGPQTSVMAHVLSHLANELHVPLLSFTALDPFLSPIQFPYFVQTAPKDEFQMTAIADMVSYYGWSRVIAVFSDDDSSRNSINVLGDKLSERRCKISYKAALPPDPTATVSQVQDELVKVNMMESRVIVLHTFHRTGLMVFDVAQKLGMMKSGYIWITSTWLSTVLDSTSPLSENTSKSIEGVLTLRSHTPISRKKSSFISQWDKLSNGSIGLNPYGLYAYDTVWMIAYAVKELFDQGRSISFSDMNLGDLEGGSLNLRGLSIFNEGEQLLNNILKTNMTGLTGPIKFTPDRFIIHPAYDIINVIQKGYHQVGYWSNYSGLSVVEPEILYEKPPNKSVTSQQLGSIIWPGKTTIKPRGWVFPYNGKELKIGVPDRVSYRDFVSRVNGTDQVQGYCIDVFLAAIALLPYAVPYRFILFGDGHKNPSYYDLVNMIPSGAFDAVVGDIAIVTNRTKILDFTQPYVESGLVVIAPVRDSHSSPWAFLRPFTPMMWVVTALFFFVIGAVVWILEHRKNDEFRGPPKKQLTTILWFSFSTMFFAHRENTVSTLGRIVILIWLFVVLIITSSYTASLTSMLTVQQLSSPITGIDSLIVSTEPIGFQVGSFAQNYLIEELSIPKSRLIALGSPEEYAYALEKGTVAAVVDEQPFADLFLSDYCKFGVRGQMFTKSGWGFAFPRDSPLAIDMSNAILTLSENGELQRIHDKWFSRKGCAAQSDTELLQVEQLQLQSFWGLFLICGITCFLALLVHFCRMFKQFSRYVPEEEDEGAGALSSDGSRPGSVRLKKILAFVDEKEERWKSRLKRRHGEMLNDCFGMEEESRNESKGIQIQIQ | 1002 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 9853275 | 9857307 | - | Conep12aG0133500.1 | Cone12ag1294 | 450138 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone12ag1294 | 1002 | FunFam | Glutamate receptor | 652 | 782 | - | - | |
Cone12ag1294 | 1002 | FunFam | Glutamate receptor | 778 | 881 | - | - | |
Cone12ag1294 | 1002 | FunFam | Glutamate receptor | 536 | 652 | - | - | |
Cone12ag1294 | 1002 | CDD | PBP1_GABAb_receptor_plant | 107 | 497 | IPR044440 | - | |
Cone12ag1294 | 1002 | Gene3D | - | 123 | 469 | - | - | |
Cone12ag1294 | 1002 | CDD | GluR_Plant | 539 | 877 | - | - | |
Cone12ag1294 | 1002 | SUPERFAMILY | Periplasmic binding protein-like I | 100 | 533 | IPR028082 | - | |
Cone12ag1294 | 1002 | Pfam | Ligand-gated ion channel | 879 | 912 | IPR001320 | GO:0015276(InterPro)|GO:0016020(InterPro) | |
Cone12ag1294 | 1002 | Gene3D | - | 806 | 842 | - | - | |
Cone12ag1294 | 1002 | Gene3D | - | 535 | 652 | - | - | |
Cone12ag1294 | 1002 | SUPERFAMILY | Periplasmic binding protein-like II | 517 | 879 | - | - | |
Cone12ag1294 | 1002 | SMART | GluR_14 | 542 | 879 | IPR001320 | GO:0015276(InterPro)|GO:0016020(InterPro) | |
Cone12ag1294 | 1002 | Gene3D | - | 653 | 783 | - | - | |
Cone12ag1294 | 1002 | Gene3D | - | 221 | 494 | - | - | |
Cone12ag1294 | 1002 | PIRSF | IGluLR_plant | 76 | 998 | IPR017103 | - | |
Cone12ag1294 | 1002 | Pfam | Receptor family ligand binding region | 123 | 478 | IPR001828 | - | |
Cone12ag1294 | 1002 | PANTHER | IONOTROPIC GLUTAMATE RECEPTOR | 106 | 955 | IPR015683 | GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER) | |
Cone12ag1294 | 1002 | Gene3D | - | 843 | 877 | - | - | |
Cone12ag1294 | 1002 | FunFam | Glutamate receptor | 221 | 381 | - | - | |
Cone12ag1294 | 1002 | Pfam | Bacterial extracellular solute-binding proteins, family 3 | 600 | 662 | IPR001638 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone12ag1294 | Cone-Chr12:9853275 | Cone3ag1340 | Cone-Chr3:32383157 | 2.76E-286 | dispersed | |
Cone10ag1211 | Cone-Chr10:8985690 | Cone12ag1294 | Cone-Chr12:9853275 | 0 | wgd | |
Cone12ag0877 | Cone-Chr12:7816693 | Cone12ag1294 | Cone-Chr12:9853275 | 0 | wgd | |
Cone12ag1294 | Cone-Chr12:9853275 | Cone7ag1943 | Cone-Chr7:12394537 | 3.33E-77 | wgd | |
Cone12ag1294 | Cone-Chr12:9853275 | Cone8ag0908 | Cone-Chr8:8803388 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone12ag1294 | K05387 | - | rcu:8270549 | 1303.12 |