Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1294 ATGAAAGATCCAATGGACCACTGCAATTGGGCCGACTGCACTGGTGAAGATGAAAGTGAACATGGGTCATTGTCAGAACCTCCAGAAAAACAATGTGGAAATCTAAAACTTTCCGATTGGTTATCTTTCTCCATCTTGAAGTATTCTCATTTAGAATTAAACAATGGGAAAGTAATTGTTCTCGAGCAGGGACGGCCCTTACTTTCTTACCACCTTCAAGCCTTTGTTTTAAACATGAACATAATTCGGCTTCTGTCACCAATTCTTCTTTTATTGATTGGAGCTCATTCAGAAGGAGCTTCTACACCAAATGTAGTCAATGTCGGAGCTATTTTTTCATTCAACACTATTAATGGAAAAGTCTCAGAAATCGCCATCAAGGCTGCTGAGAAAGATGTTAATTCCAATCCAACCATTCTAGGCGGACGTAAATTGTCTATATCCATGCTTGACTCCAATTTCAGTGGATTCCTTGCAATTGTTGGAGCGTTGAAGTACATGGAAAGCGATACCATAGCAATAATCGGGCCACAAACCTCTGTAATGGCCCATGTCCTCTCACACCTTGCAAATGAACTCCACGTTCCTTTACTATCATTTACAGCTCTAGACCCCTTTCTTTCACCCATACAGTTTCCATATTTCGTCCAAACAGCTCCAAAAGATGAATTCCAAATGACAGCAATTGCTGACATGGTTAGTTATTACGGCTGGAGCAGGGTCATTGCAGTTTTTAGTGATGATGATTCGAGCCGAAACAGTATAAACGTGTTAGGAGACAAACTTTCCGAAAGACGCTGCAAGATTTCTTATAAAGCTGCTCTTCCACCAGACCCCACGGCAACGGTGTCTCAAGTCCAAGATGAATTGGTTAAGGTTAATATGATGGAATCTAGGGTAATTGTTCTACATACTTTCCACCGGACAGGCCTTATGGTTTTTGATGTGGCCCAAAAGCTCGGGATGATGAAAAGTGGGTATATTTGGATAACTTCTACTTGGCTGTCTACGGTTTTAGATTCAACTTCACCCCTTTCGGAAAATACTTCGAAATCTATTGAAGGAGTTCTCACTCTTCGTTCACACACACCAATTTCGAGGAAAAAATCGTCTTTTATTTCTCAATGGGATAAGCTGAGTAATGGGTCTATTGGGTTGAACCCGTATGGTTTATACGCATATGATACTGTCTGGATGATTGCATATGCCGTTAAAGAGTTATTCGATCAAGGTCGGTCCATTTCTTTCTCGGATATGAACTTGGGAGATCTTGAAGGAGGGAGTTTAAATCTTAGAGGATTAAGCATTTTCAATGAAGGAGAGCAATTGCTTAACAACATATTGAAAACCAATATGACTGGTTTAACGGGTCCTATCAAGTTCACTCCAGATAGATTTATAATACATCCTGCCTATGATATCATAAATGTAATTCAAAAGGGTTATCATCAAGTTGGATATTGGTCGAATTATTCTGGGCTCTCTGTTGTGGAGCCGGAGATACTGTATGAAAAACCGCCTAACAAATCGGTTACAAGCCAACAATTAGGCAGCATTATATGGCCCGGAAAAACAACGATAAAACCACGGGGATGGGTTTTTCCGTACAATGGAAAGGAGTTAAAGATTGGAGTTCCAGACAGAGTTAGTTATAGGGATTTTGTGTCAAGAGTGAATGGCACTGATCAAGTCCAAGGATATTGCATTGATGTTTTCCTTGCTGCCATAGCTTTGCTTCCTTATGCAGTTCCTTACAGATTCATTCTCTTTGGAGATGGTCATAAGAATCCAAGTTACTATGACCTTGTAAACATGATCCCATCCGGTGCTTTTGATGCAGTTGTTGGTGACATTGCAATTGTTACAAACCGAACAAAGATTTTGGATTTTACTCAACCTTATGTAGAATCAGGCTTAGTGGTTATTGCCCCGGTTAGAGACTCTCATTCAAGTCCGTGGGCTTTTCTGAGACCATTTACTCCCATGATGTGGGTTGTTACAGCTCTCTTCTTTTTCGTCATAGGAGCCGTCGTATGGATTCTCGAACATAGAAAAAACGACGAGTTCCGGGGCCCACCTAAGAAACAGCTCACCACAATTCTCTGGTTTAGCTTCTCCACAATGTTTTTCGCACACAGAGAAAATACAGTAAGCACACTGGGTCGAATCGTGATACTAATCTGGCTTTTTGTGGTTCTAATAATAACCTCAAGCTATACTGCTAGCTTGACATCAATGCTAACTGTTCAACAGTTATCTTCACCCATAACTGGGATTGATTCATTGATAGTTAGCACGGAACCTATAGGATTCCAGGTCGGCTCTTTCGCCCAGAACTACTTAATTGAAGAACTAAGCATCCCAAAATCCCGCCTCATTGCTCTTGGCTCGCCCGAAGAATATGCTTATGCTCTTGAAAAAGGAACTGTTGCTGCTGTAGTTGATGAACAGCCCTTTGCAGATCTATTCCTTTCAGATTATTGTAAATTCGGAGTCAGAGGCCAGATGTTCACGAAAAGTGGGTGGGGATTTGCTTTTCCTAGAGATTCTCCATTAGCCATTGATATGTCGAATGCGATTCTTACTTTATCGGAAAATGGAGAACTTCAGAGGATACATGATAAATGGTTTTCGAGAAAGGGTTGCGCTGCACAGAGCGATACTGAACTTCTTCAAGTAGAACAACTTCAATTGCAAAGCTTTTGGGGACTGTTTCTTATTTGTGGGATTACTTGTTTCCTAGCTCTGCTTGTTCATTTTTGTAGGATGTTTAAACAGTTTAGTAGATATGTTCCTGAAGAAGAAGATGAAGGAGCTGGGGCTCTTTCTAGTGACGGGTCCAGGCCCGGATCGGTTCGATTGAAAAAGATCTTGGCATTTGTGGATGAGAAGGAAGAGAGATGGAAGAGCAGGTTGAAGAGAAGACATGGTGAGATGTTAAATGATTGTTTTGGAATGGAAGAAGAATCTAGGAATGAATCCAAAGGAATACAAATCCAAATTCAATAG 3009 40.84 MKDPMDHCNWADCTGEDESEHGSLSEPPEKQCGNLKLSDWLSFSILKYSHLELNNGKVIVLEQGRPLLSYHLQAFVLNMNIIRLLSPILLLLIGAHSEGASTPNVVNVGAIFSFNTINGKVSEIAIKAAEKDVNSNPTILGGRKLSISMLDSNFSGFLAIVGALKYMESDTIAIIGPQTSVMAHVLSHLANELHVPLLSFTALDPFLSPIQFPYFVQTAPKDEFQMTAIADMVSYYGWSRVIAVFSDDDSSRNSINVLGDKLSERRCKISYKAALPPDPTATVSQVQDELVKVNMMESRVIVLHTFHRTGLMVFDVAQKLGMMKSGYIWITSTWLSTVLDSTSPLSENTSKSIEGVLTLRSHTPISRKKSSFISQWDKLSNGSIGLNPYGLYAYDTVWMIAYAVKELFDQGRSISFSDMNLGDLEGGSLNLRGLSIFNEGEQLLNNILKTNMTGLTGPIKFTPDRFIIHPAYDIINVIQKGYHQVGYWSNYSGLSVVEPEILYEKPPNKSVTSQQLGSIIWPGKTTIKPRGWVFPYNGKELKIGVPDRVSYRDFVSRVNGTDQVQGYCIDVFLAAIALLPYAVPYRFILFGDGHKNPSYYDLVNMIPSGAFDAVVGDIAIVTNRTKILDFTQPYVESGLVVIAPVRDSHSSPWAFLRPFTPMMWVVTALFFFVIGAVVWILEHRKNDEFRGPPKKQLTTILWFSFSTMFFAHRENTVSTLGRIVILIWLFVVLIITSSYTASLTSMLTVQQLSSPITGIDSLIVSTEPIGFQVGSFAQNYLIEELSIPKSRLIALGSPEEYAYALEKGTVAAVVDEQPFADLFLSDYCKFGVRGQMFTKSGWGFAFPRDSPLAIDMSNAILTLSENGELQRIHDKWFSRKGCAAQSDTELLQVEQLQLQSFWGLFLICGITCFLALLVHFCRMFKQFSRYVPEEEDEGAGALSSDGSRPGSVRLKKILAFVDEKEERWKSRLKRRHGEMLNDCFGMEEESRNESKGIQIQIQ 1002
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9853275 9857307 - Conep12aG0133500.1 Cone12ag1294 450138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1294 1002 FunFam Glutamate receptor 652 782 - -
Cone12ag1294 1002 FunFam Glutamate receptor 778 881 - -
Cone12ag1294 1002 FunFam Glutamate receptor 536 652 - -
Cone12ag1294 1002 CDD PBP1_GABAb_receptor_plant 107 497 IPR044440 -
Cone12ag1294 1002 Gene3D - 123 469 - -
Cone12ag1294 1002 CDD GluR_Plant 539 877 - -
Cone12ag1294 1002 SUPERFAMILY Periplasmic binding protein-like I 100 533 IPR028082 -
Cone12ag1294 1002 Pfam Ligand-gated ion channel 879 912 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cone12ag1294 1002 Gene3D - 806 842 - -
Cone12ag1294 1002 Gene3D - 535 652 - -
Cone12ag1294 1002 SUPERFAMILY Periplasmic binding protein-like II 517 879 - -
Cone12ag1294 1002 SMART GluR_14 542 879 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cone12ag1294 1002 Gene3D - 653 783 - -
Cone12ag1294 1002 Gene3D - 221 494 - -
Cone12ag1294 1002 PIRSF IGluLR_plant 76 998 IPR017103 -
Cone12ag1294 1002 Pfam Receptor family ligand binding region 123 478 IPR001828 -
Cone12ag1294 1002 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 106 955 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Cone12ag1294 1002 Gene3D - 843 877 - -
Cone12ag1294 1002 FunFam Glutamate receptor 221 381 - -
Cone12ag1294 1002 Pfam Bacterial extracellular solute-binding proteins, family 3 600 662 IPR001638 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1294 Cone-Chr12:9853275 Cone3ag1340 Cone-Chr3:32383157 2.76E-286 dispersed
Cone10ag1211 Cone-Chr10:8985690 Cone12ag1294 Cone-Chr12:9853275 0 wgd
Cone12ag0877 Cone-Chr12:7816693 Cone12ag1294 Cone-Chr12:9853275 0 wgd
Cone12ag1294 Cone-Chr12:9853275 Cone7ag1943 Cone-Chr7:12394537 3.33E-77 wgd
Cone12ag1294 Cone-Chr12:9853275 Cone8ag0908 Cone-Chr8:8803388 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1294 K05387 - rcu:8270549 1303.12