Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1295 ATGGCTTCTGGGACAGATTACCCGCCTCTATTATTCATCTTTGAAGCCAATTACCGAAAGAGAAATGTCATACTGGCTAGAAATGAAAAGGGGGAGTCTCTTGAGAACACAAGACACATACACATTAGCAAACCTTCAAGGCAACTCTCAACAGTTTCACACTACGTTAGCCCGGTTCAGTTGAATTCTGCAATTGAATCAGAATTTGATATTGAGATGGTTACCGCAAAACCATCATCAGACTGTGACTCGACATTTGAACCCGTTTTCCGATCGGGGAGTTGTTCTGAAATTGGGCCGAAGCCTTTTATGGAGGATGAGCATGTATGTATCGATGATCTTCTTGAGCATCTGGGTCCCACTGAACACTTCTATTCTCCTGGCGCTTTCTATGGGGTATTTGATGGGCATGGTGGTGTAGATGCAGCTTCCTTTATTAGGCATAACATTTTGAGGTTTATAATCAAAGACACCCATTTCTCTGACTGCATGAATGAGGCTATTAAAAGTGCTTTTCTGAAAGCCGATCAAGCATTTGAAGAAGTTGCTTCTCTAGATACTTCCTCTGGTACTACTGCACTAACCGCTCTTATTTGTGGAAGGAGAATGCTAATTGCCAATGTGGGGGATTGTAGAGCCGTGTTGGGGAAAAGAGGGAAGGCGACGGAGTTATCAAAGGACCACAAGCCAAACTGCAGTTCTGAAAGGCGAAGGATTGAGAGACTAGGTGGTGTGGTATATGACGGTTACCTTAACGGGCGGTTATCAGTTTCACGGGCCCTCGGAGATTGGCATATGAAAGGCCCAAAAGGTTCCTCCCTCAGTTCTTGTCCGTTAAGCGCTGAGCCTGAGGTCCAAGAGGTAGTGCTTGGCCCGGAAGATGAGTTCTTGATATTAGGTTGTGATGGGTTGTGGGATGTTATGAGCAGCCAGTTTGCAGTTATGATTGCTAGGAAGGAGTTGATGATTCATAACGATCCAGAGAGATGTGCTAGGGAGCTTGTTAGGGAGGCTATGAAGAGGAATTCATGCGATAATTTGACGGTTATTGTCATCTGTTTTTCTCCAGATCCTCCACCTCAGATTAGACAGTGA 1095 44.84 MASGTDYPPLLFIFEANYRKRNVILARNEKGESLENTRHIHISKPSRQLSTVSHYVSPVQLNSAIESEFDIEMVTAKPSSDCDSTFEPVFRSGSCSEIGPKPFMEDEHVCIDDLLEHLGPTEHFYSPGAFYGVFDGHGGVDAASFIRHNILRFIIKDTHFSDCMNEAIKSAFLKADQAFEEVASLDTSSGTTALTALICGRRMLIANVGDCRAVLGKRGKATELSKDHKPNCSSERRRIERLGGVVYDGYLNGRLSVSRALGDWHMKGPKGSSLSSCPLSAEPEVQEVVLGPEDEFLILGCDGLWDVMSSQFAVMIARKELMIHNDPERCARELVREAMKRNSCDNLTVIVICFSPDPPPQIRQ 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9857607 9860330 + Conep12aG0133600.1 Cone12ag1295 450139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1295 364 SUPERFAMILY PP2C-like 85 355 IPR036457 -
Cone12ag1295 364 ProSitePatterns PPM-type phosphatase domain signature. 130 138 IPR000222 GO:0043169(InterPro)
Cone12ag1295 364 Gene3D - 72 357 IPR036457 -
Cone12ag1295 364 SMART PP2C_4 81 352 IPR001932 -
Cone12ag1295 364 CDD PP2Cc 90 354 IPR001932 -
Cone12ag1295 364 PANTHER PROTEIN PHOSPHATASE 2C 78 354 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
Cone12ag1295 364 ProSiteProfiles PPM-type phosphatase domain profile. 91 354 IPR001932 -
Cone12ag1295 364 SMART PP2C_SIG_2 106 354 IPR001932 -
Cone12ag1295 364 FunFam Probable protein phosphatase 2C 22 75 357 - -
Cone12ag1295 364 Pfam Protein phosphatase 2C 98 346 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1295 Cone-Chr12:9857607 Cone7ag1942 Cone-Chr7:12392172 4.28E-153 dispersed
Cone14ag0002 Cone-Chr14:28189 Cone12ag1295 Cone-Chr12:9857607 2.69E-31 transposed
Cone12ag1295 Cone-Chr12:9857607 Cone8ag1336 Cone-Chr8:10770928 1.62E-253 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1295 K14803 - mdm:103422184 525.398