Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1298 ATGGCGTCGGTGCAGAATCAAGCGCCTAATGTGGATCTATTCGATGCGTATTTCCGGCGAGCAGATTTAGATCGCGATGGCCGTATTAGTGGTCCTGAAGCGGTCGCGTTCTTTCAAGGCTCGGGATTGACGAAACAGGTCCTTGCTCAGATATGGGCACTTGCAGACCAGAGGCAAAGTGGTTTCCTTGGCCGGGCTGAGTTTTATAATGCACTTAAACTGATTACTGTGGCACAAAGTAAGCGAGAATTAACCCCTCAAATTGTAAAAGCTGCATTGTATGGTCCAGCCGCAGCTAAAATACCAGCACCGCAAATAAATATGTCTGCCATCCCTCCATCTCAGTTCAATTCTGTTGCAGCAGCACCTGCCCCTCCAAGCAGTGGTATTCCAACATCCTCTCAGAGCCTTGGCTTGAGGGGACCACAAGTTTCTCCAAATCTCAATAATAATCACCAACAGGCTCCTCCTCAACAGATTCTATCATTAGGACCTCCTCAAGCAACGTCTACTACTACTGCACGTCCAATGCCAGGTTTTGCCACACAGGGATTTTCTGGGGCAGGCAATACAGCAGGGCATCCCCCATCTAACCCAAGCTTCTCAAATGATTGGGTGAGGGCCAACGTTGCCGGTGTTCAGACAATGTCCTCACAAGCTCCAAGTCCAGGAATTGCTCCCCCAACAACTCAGGTTGGATTTGGACCAACAACATCTGTATCGACGGCAATAATGCCTCCTCGACCTCAGGCTGCTTCTGGGATGCAGCCATCTGGATCACCTCAAACACCCAACCTCGGAATTACTCCTCCCCAAGATCTGGTTGGATTTGGACTGGCAACATCAGGACCCACAGCTTTGCTACCTTCTCGTCCTCAGGCAGCTTCTGGGATACAGACATCTGGACCACCAGCTAAGGAATTTAAACCTATGGGCATTACTGGAAATGGGATTGCTTCTGATTCATTTTTTGGAGGAGATGTATTCTCTGCAACCCCATCTTCATCAAAACTAGATTCTTCCTCAAGTGCAGTTTCTGCACGGAATGTAACAGCCTCACCAGGCATCGTTTCTGTACCTTCTGCGACGCAGCTTTCAATTGGGCCAGGGGTGCCTGATTCTTCACGGGGTTCTTTCCCAGTGCAACCTGTTGGTGGTCAGCTCCCGAATGCCCAGTCACTATTAAAGCCTAATCAACAGGTCTTGACTCCACCAACTTCATCTGGAGTGCAGCATCCTGTTTCCAGTCAGTCCCAGCAGCCATGGCCGAAGATGTCACAGACTGATGTCCAGAAGTATACCAAAGTGTTTGTAGAAGTAGACAAAGATAGAGATGGAAAAATAACTGGTGAAGAGGCACGGAACTTGTTTCTGAGTTGGAGATTACCTAGAGAGATTTTGAAGCAGGTGTGGGACTTATCTGATCAAGATAATGATAGCATGCTTTCTGTCAGGGAGTTCTGTGTTGCACTATATTTGATGGAGCGGTATAGGGAAGGGCGTCCTCTTCCCTCAGTGCTCCCAAGTAACATAATCTTTGAATTACCCAGCTCTGGTCAACCTGTGATGAACTATAACAATGCTGCTTGGAGACCTCCAACTGGTTTCCAACAACCGCGAGGTGTGCCCGTGGCTCCTGCGCTGCATACAGGAAATGTAGCAGCTAGGCCTCCAAGGCCACCGGGTGCCCCTAAGACTGATGATGGATTGCAGACCACTCAGCAGAAATCAAAAGTGCCAGTCCTGGAGAAACACCTTATAGATCAACTCAGTACTGAGGAGCAGAACTCACTTAACTCAAAACTCCATGAAGCAACAGAGGCTGCAAAAAAAGTTGAAGAATTGGAGAAAGAAATTGTAGACTCTAGAGCGAAAATAGAGTATTGCCAGACTAAAATGCAGGAACTTGTCCTTTACAAGAGCAGATGTGACAATCGCCTTAATGAGATCACAGAAAGGGTATCTGCTGATAAGCGTGAGGCTGAGTCTCTTGCCAAGAAATATGAAGAGAAATGCAAACAACTTGGAGATGTAGCCTCCAGGTTGACACTTGAAGAAGCAACATTCCGTGACCTACAGGAGAAGAAGATGGAGCTGTATAAGGCAATTGTGAAGATGGAAAATGGTGGTGCTGATGATACTTTACAGGAGCGAGCTGATCGAATTCAGTCAGACCTTGATGAGTTAGTCAAAGCTCTCAATGAGCGTTGCAAGAGCTATGGTTTACGTTGTAAACCAACAACTGTTACAGAACTTCCTTACGGTTGGCAGCCTGGTATCCAAGAGGGAGCTGCTGACTGGGATGAAGACTGGGATAAGTTTGAGGAAGAAGGATTCACTCTTGTCAAGGAGCTTACTCTTGACGTGCAGAATATCTTGGCACGTCCAAAGGAGAAATCTAAAGTAGTTCGGAAGGAAACAGTTGAAAGCCCTAGAGTTGCATCTTTTCCAAATGGTGATGTTAAGGGAGAGAAGCCTCATACTGTTGATGACACGGCTACTGAAAATGGATCAGCAAACAATAATAAGGCTGAAGATGGGTCAGCAAAAAGTGCTCCGAGCAGTCCAATTGCAGGTAGTGGAATGGAAAGTCGAATAAAAAGTGCTCCAAACAGTCCTGCTGCTAGTAGTATAATGGGGAGTCCTAAGGATTTATTCAGTTCTAACTTTGGAATGGCTAGTGGTTTTGATTCTTCTCCCCGTGATAAAGAAACCCAAAGTGAGCATGGAGGCGGAGGGTCTATATTTTCTGGTGACAAGAGTTTTGATGAGCCAAATTGGGGAACATTTGACACTAATGATGATGTTGACTCTGCATGGGGATTTAACGCAAGTAGTACCACCAAGAAATTGGATCATGAGAGAAATAGTGACGATTATTTCTTCGGTTCTGAGGAGCTCGGCCTAAATCCTATCAGGACAGGTTCACCTCATGGCAGTAGTGGCTTGTTCCCCAAGAAAAGCACATTTTTTGACGACTCTGTTCCTAGCACCCCACTCTCTCTTTTCAGTACAGGCAACTCACCGGGTGGGTTCAACAAGCAAGGTTCAGAAAACACTTTTGACAGCTTCTCAAGGTTCGATTCTTTTAACATGAGCGACGGTGGACTCTTTGCTTCTAGAGAAACACCGAGGGAAGCATTTGCTCGATTTGATTCAATGCGAAGCAATAAAGATTTTGACACTGGCCATGGATTCTCATCGTTTGACGACTCTGATCCTTTTGGGACTTCCGGACCATTTAAGGACTCTTCACTCACGAATCAAACTCCAAGAAGCGGGTCGGAGAATAATTGGAGTGCATTTTAA 3309 46.39 MASVQNQAPNVDLFDAYFRRADLDRDGRISGPEAVAFFQGSGLTKQVLAQIWALADQRQSGFLGRAEFYNALKLITVAQSKRELTPQIVKAALYGPAAAKIPAPQINMSAIPPSQFNSVAAAPAPPSSGIPTSSQSLGLRGPQVSPNLNNNHQQAPPQQILSLGPPQATSTTTARPMPGFATQGFSGAGNTAGHPPSNPSFSNDWVRANVAGVQTMSSQAPSPGIAPPTTQVGFGPTTSVSTAIMPPRPQAASGMQPSGSPQTPNLGITPPQDLVGFGLATSGPTALLPSRPQAASGIQTSGPPAKEFKPMGITGNGIASDSFFGGDVFSATPSSSKLDSSSSAVSARNVTASPGIVSVPSATQLSIGPGVPDSSRGSFPVQPVGGQLPNAQSLLKPNQQVLTPPTSSGVQHPVSSQSQQPWPKMSQTDVQKYTKVFVEVDKDRDGKITGEEARNLFLSWRLPREILKQVWDLSDQDNDSMLSVREFCVALYLMERYREGRPLPSVLPSNIIFELPSSGQPVMNYNNAAWRPPTGFQQPRGVPVAPALHTGNVAARPPRPPGAPKTDDGLQTTQQKSKVPVLEKHLIDQLSTEEQNSLNSKLHEATEAAKKVEELEKEIVDSRAKIEYCQTKMQELVLYKSRCDNRLNEITERVSADKREAESLAKKYEEKCKQLGDVASRLTLEEATFRDLQEKKMELYKAIVKMENGGADDTLQERADRIQSDLDELVKALNERCKSYGLRCKPTTVTELPYGWQPGIQEGAADWDEDWDKFEEEGFTLVKELTLDVQNILARPKEKSKVVRKETVESPRVASFPNGDVKGEKPHTVDDTATENGSANNNKAEDGSAKSAPSSPIAGSGMESRIKSAPNSPAASSIMGSPKDLFSSNFGMASGFDSSPRDKETQSEHGGGGSIFSGDKSFDEPNWGTFDTNDDVDSAWGFNASSTTKKLDHERNSDDYFFGSEELGLNPIRTGSPHGSSGLFPKKSTFFDDSVPSTPLSLFSTGNSPGGFNKQGSENTFDSFSRFDSFNMSDGGLFASRETPREAFARFDSMRSNKDFDTGHGFSSFDDSDPFGTSGPFKDSSLTNQTPRSGSENNWSAF 1102
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9866620 9872836 - Conep12aG0133900.1 Cone12ag1298 450142

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1298 1102 SMART eh_3 2 98 IPR000261 GO:0005515(InterPro)
Cone12ag1298 1102 SMART eh_3 422 517 IPR000261 GO:0005515(InterPro)
Cone12ag1298 1102 Pfam EF hand 15 33 IPR002048 GO:0005509(InterPro)
Cone12ag1298 1102 Pfam Cytoskeletal-regulatory complex EF hand 423 509 IPR000261 GO:0005515(InterPro)
Cone12ag1298 1102 ProSiteProfiles EH domain profile. 429 512 IPR000261 GO:0005515(InterPro)
Cone12ag1298 1102 MobiDBLite consensus disorder prediction 385 426 - -
Cone12ag1298 1102 Gene3D - 406 512 - -
Cone12ag1298 1102 SUPERFAMILY EF-hand 10 90 IPR011992 -
Cone12ag1298 1102 ProSiteProfiles EF-hand calcium-binding domain profile. 465 497 IPR002048 GO:0005509(InterPro)
Cone12ag1298 1102 CDD EH 14 80 IPR000261 GO:0005515(InterPro)
Cone12ag1298 1102 Coils Coil 595 632 - -
Cone12ag1298 1102 MobiDBLite consensus disorder prediction 119 173 - -
Cone12ag1298 1102 MobiDBLite consensus disorder prediction 1071 1102 - -
Cone12ag1298 1102 MobiDBLite consensus disorder prediction 798 948 - -
Cone12ag1298 1102 MobiDBLite consensus disorder prediction 361 426 - -
Cone12ag1298 1102 ProSiteProfiles EF-hand calcium-binding domain profile. 45 78 IPR002048 GO:0005509(InterPro)
Cone12ag1298 1102 CDD EH 433 499 IPR000261 GO:0005515(InterPro)
Cone12ag1298 1102 ProSiteProfiles EF-hand calcium-binding domain profile. 9 44 IPR002048 GO:0005509(InterPro)
Cone12ag1298 1102 SMART efh_1 47 75 IPR002048 GO:0005509(InterPro)
Cone12ag1298 1102 SMART efh_1 466 494 IPR002048 GO:0005509(InterPro)
Cone12ag1298 1102 SMART efh_1 432 460 IPR002048 GO:0005509(InterPro)
Cone12ag1298 1102 SMART efh_1 13 41 IPR002048 GO:0005509(InterPro)
Cone12ag1298 1102 SUPERFAMILY EF-hand 419 512 IPR011992 -
Cone12ag1298 1102 MobiDBLite consensus disorder prediction 550 578 - -
Cone12ag1298 1102 ProSiteProfiles EF-hand calcium-binding domain profile. 428 463 IPR002048 GO:0005509(InterPro)
Cone12ag1298 1102 PANTHER EH DOMAIN 249 1009 - GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006897(PANTHER)|GO:0016197(PANTHER)
Cone12ag1298 1102 MobiDBLite consensus disorder prediction 926 947 - -
Cone12ag1298 1102 MobiDBLite consensus disorder prediction 1062 1102 - -
Cone12ag1298 1102 MobiDBLite consensus disorder prediction 865 895 - -
Cone12ag1298 1102 ProSiteProfiles EH domain profile. 10 100 IPR000261 GO:0005515(InterPro)
Cone12ag1298 1102 Gene3D - 5 100 - -
Cone12ag1298 1102 MobiDBLite consensus disorder prediction 832 858 - -
Cone12ag1298 1102 Coils Coil 647 685 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1298 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1298 Cone-Chr12:9866620 Cone17ag1459 Cone-Chr17:9898274 9.47E-211 dispersed
Cone12ag1298 Cone-Chr12:9866620 Cone8ag1333 Cone-Chr8:10758146 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g298 . . . . . . . . Cmo19g00819 Cmo11g01788 . . . . Sed05g2162 Cpe04g00633 Cpe15g00643 Bhi05g01580 Tan02g0572 Cmetu01g1669 Lac12g0474 . . . Cla02g00345 Cam02g0354 Cec02g0355 Cco02g0361 Clacu02g0346 Cmu02g0343 Cre02g0675 Cone12ag1298 Cone8ag1333 . . . Csa07g00188 . Cme01g01145 Blo04g00607 Blo13g00472 . Bda14g00649 Bpe15g00782 . Bma03g00639 Bma08g00716 . . . Cma11g01331 Cma19g00799 Car11g01415 Car19g00615 . . . . . . . . . . . . . . . . Lsi11g01287 . Chy01g00592 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004902 2 2 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 41