Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1303 ATGGGTTACATGTGTGATTTCTGTGGAGATCAAAGGTCAATGGTTTATTGCCGTTCTGATGCCGCCTGCCTCTGTTTATCATGTGACCGGAATGTTCACTCAGCTAATGCCTTGTCAAGGCGCCATTCTAGAACTCTGTTATGTGAAAGATGCAATTCACAACCAGCATTAGTAAGATGTTCTGAAGAGAATATCTCTCTTTGTCAGAGTTGTGACAGAAGGGGTCATGGAGCTTCTACTTCTTCATCGTCACATAAGAGGCAGACACTTACTTGTTACTCTGGCTGCCCTTCAGCTGCAGAGCTTTCTTCGATCTGGTCGTTTGCTTTAGATCTCCCTTCTGCAGGAGAAGCTTGTGAGCAAGGATTAGGGATGATGAGCATCGCGGAGAATAGTAGTATGGGTGGTGAGTGGGGCCAGACCGAAAATAATTCTTGCCAGAATATCTCTGTTGAAGCGGAGGATGGTCGTGGTGTGGATAAATCAAATTGGAGTGGGCCTTCTCTATCTCCCCTTCTGGAGCAGCCTGGTGGATCTTCAAATCCAACATTTTCCAAGCTATGCTATACTGGAATAAAGGGTCCTCCTGGAAGTTTCGGAGAAGATGATGACCTCTATGAGGATTTTAATATGGATGAAATGGATCTGAGCCTTGAAAACTATGAGGAGCTATTTGGTGTAACTCTTAATCATTCAGAAGAGCTGTTAGAGAATGGTGGGATTGATAGCTTGTTCAGGACAAGGGACTTGTCTGCAGCCGATTCCAGTTGCCTAGGTGCAGCTGCCACTGAGGGATCATCTGCTGGACTGGTTAATAATGCAGTACAGCCAGCTGCTTCTGGAGATTCCATTATGAGTACAAAAACAGAACCTATTCTTTGCTTTGGCGCTAAGGCAGTGCATTCTAGTTTATCATTTTCTGGCCTTACTGGAGACAGTAGTGCAGGAGATCATCAAGATTGTGGAGTTTCTCCCATCCTTCTAATGGGTGAGCCTCCATGGTGTACCCCTTGCCCAGAAACTTCCTCCCAGTCTGCTAATCGTAATAATGCTGTTTTGCGGTACAAGGAAAAGAAAAAAATCCGGAAGTTTGAGAAGAAGGTTAGGTATGCATCTAGGAAAGCAAGAGCTGATGTAAGGAAGCGTGTAAAGGGACGTTTTGTCAAAGCCGGAGATGCTTATGATTATGATCCCTTGAGCCAAACCAGAAGCTACTGA 1218 44.99 MGYMCDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSRRHSRTLLCERCNSQPALVRCSEENISLCQSCDRRGHGASTSSSSHKRQTLTCYSGCPSAAELSSIWSFALDLPSAGEACEQGLGMMSIAENSSMGGEWGQTENNSCQNISVEAEDGRGVDKSNWSGPSLSPLLEQPGGSSNPTFSKLCYTGIKGPPGSFGEDDDLYEDFNMDEMDLSLENYEELFGVTLNHSEELLENGGIDSLFRTRDLSAADSSCLGAAATEGSSAGLVNNAVQPAASGDSIMSTKTEPILCFGAKAVHSSLSFSGLTGDSSAGDHQDCGVSPILLMGEPPWCTPCPETSSQSANRNNAVLRYKEKKKIRKFEKKVRYASRKARADVRKRVKGRFVKAGDAYDYDPLSQTRSY 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9891121 9894560 + Conep12aG0134400.1 Cone12ag1303 450147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1303 405 ProSiteProfiles CCT domain profile. 348 390 IPR010402 GO:0005515(InterPro)
Cone12ag1303 405 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270(InterPro)
Cone12ag1303 405 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Cone12ag1303 405 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Cone12ag1303 405 SMART bboxneu5 48 90 IPR000315 GO:0008270(InterPro)
Cone12ag1303 405 CDD Bbox1_BBX-like 5 47 IPR049808 -
Cone12ag1303 405 Pfam ANCHR-like B-box zinc-binding domain 47 86 - -
Cone12ag1303 405 CDD Bbox1_BBX-like 47 90 IPR049808 -
Cone12ag1303 405 Pfam CCT motif 348 390 IPR010402 GO:0005515(InterPro)
Cone12ag1303 405 MobiDBLite consensus disorder prediction 157 178 - -
Cone12ag1303 405 MobiDBLite consensus disorder prediction 163 178 - -
Cone12ag1303 405 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 394 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1303 Cone-Chr12:9891121 Cone12ag1396 Cone-Chr12:10278523 5.53E-56 dispersed
Cone3ag1373 Cone-Chr3:32709900 Cone12ag1303 Cone-Chr12:9891121 3.00E-06 dispersed
Cone12ag1303 Cone-Chr12:9891121 Cone3ag1271 Cone-Chr3:31548258 4.06E-109 wgd
Cone12ag1303 Cone-Chr12:9891121 Cone8ag1358 Cone-Chr8:10874011 3.80E-230 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44528 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1303 - - - 0.0