Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone12ag1312 | ATGGCGGATTCGGATAACGAGTCAGGAGGAGGGGGGCATCAAAGCAACGCGAGGGAGCAGGATATGCTATTACCGATAGCGAACGTGAGCAGGATAATGAAGAAGGCGTTGCCGGCGAACGCGAAGATATCGAAGGACGCAAAGGAGACGTTACAGGAGTGTGTATCGGAGTTTATAAGCTTCATAACGGGTGAGGCGTCGGATAAGTGTCAGAGAGAGAAGAGGAAGACGATCAACGGTGACGATTTGTTATGGGCCATGACGACTTTAGGGTTTGAGGAGTACGTAGACCCGCTCAAAATTCATCTGATGAAGTACAGGGAGATGGAAGGTGAGAAAAGCTCCATGGGGAGGCAGGGAGACAAGGATAGTCACGCCGTAAGCTCCGGCGGTGGGGGTGGGGTCAGATCCGGCGATGATGGAAGTGGGTTTAATGGAGGAGAGATGTACGGTGGGATGATGATGATGGGACATAGTAATCAAATGTACGGTACCGATGGGTACAATAATCATCGTGGTACAGGTGGTGGGAAAGGTGGGAGTGGTGGTTCTGGAGGCGGACGACGGTAG | 570 | 52.11 | MADSDNESGGGGHQSNAREQDMLLPIANVSRIMKKALPANAKISKDAKETLQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVDPLKIHLMKYREMEGEKSSMGRQGDKDSHAVSSGGGGGVRSGDDGSGFNGGEMYGGMMMMGHSNQMYGTDGYNNHRGTGGGKGGSGGSGGGRR | 189 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 9924263 | 9927221 | - | Conep12aG0135300.1 | Cone12ag1312 | 450156 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone12ag1312 | 189 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 11 | 153 | IPR027113 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER) | |
Cone12ag1312 | 189 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Cone12ag1312 | 189 | SUPERFAMILY | Histone-fold | 20 | 123 | IPR009072 | GO:0046982(InterPro) | |
Cone12ag1312 | 189 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 23 | 87 | IPR003958 | - | |
Cone12ag1312 | 189 | PRINTS | CCAAT-binding transcription factor subunit A signature | 51 | 69 | - | - | |
Cone12ag1312 | 189 | PRINTS | CCAAT-binding transcription factor subunit A signature | 89 | 107 | - | - | |
Cone12ag1312 | 189 | PRINTS | CCAAT-binding transcription factor subunit A signature | 70 | 88 | - | - | |
Cone12ag1312 | 189 | FunFam | Nuclear transcription factor Y subunit B-3 | 12 | 132 | - | - | |
Cone12ag1312 | 189 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 54 | 70 | IPR003956 | GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone12ag1312 | 189 | Gene3D | Histone, subunit A | 11 | 129 | IPR009072 | GO:0046982(InterPro) | |
Cone12ag1312 | 189 | MobiDBLite | consensus disorder prediction | 112 | 189 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone10ag0264 | Cone-Chr10:1261543 | Cone12ag1312 | Cone-Chr12:9924263 | 1.09E-58 | dispersed | |
Cone12ag0762 | Cone-Chr12:7020540 | Cone12ag1312 | Cone-Chr12:9924263 | 3.75E-55 | dispersed | |
Cone12ag1312 | Cone-Chr12:9924263 | Cone14ag1217 | Cone-Chr14:9905417 | 3.02E-63 | dispersed | |
Cone9ag1230 | Cone-Chr9:8978709 | Cone12ag1312 | Cone-Chr12:9924263 | 3.44E-42 | transposed | |
Cone12ag1312 | Cone-Chr12:9924263 | Cone8ag1366 | Cone-Chr8:10907603 | 2.02E-105 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
44529 | PF00022 | Actin | 1.40E-22 | CL0108 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone12ag1312 | K08065 | - | cit:102616254 | 234.572 |