Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1312 ATGGCGGATTCGGATAACGAGTCAGGAGGAGGGGGGCATCAAAGCAACGCGAGGGAGCAGGATATGCTATTACCGATAGCGAACGTGAGCAGGATAATGAAGAAGGCGTTGCCGGCGAACGCGAAGATATCGAAGGACGCAAAGGAGACGTTACAGGAGTGTGTATCGGAGTTTATAAGCTTCATAACGGGTGAGGCGTCGGATAAGTGTCAGAGAGAGAAGAGGAAGACGATCAACGGTGACGATTTGTTATGGGCCATGACGACTTTAGGGTTTGAGGAGTACGTAGACCCGCTCAAAATTCATCTGATGAAGTACAGGGAGATGGAAGGTGAGAAAAGCTCCATGGGGAGGCAGGGAGACAAGGATAGTCACGCCGTAAGCTCCGGCGGTGGGGGTGGGGTCAGATCCGGCGATGATGGAAGTGGGTTTAATGGAGGAGAGATGTACGGTGGGATGATGATGATGGGACATAGTAATCAAATGTACGGTACCGATGGGTACAATAATCATCGTGGTACAGGTGGTGGGAAAGGTGGGAGTGGTGGTTCTGGAGGCGGACGACGGTAG 570 52.11 MADSDNESGGGGHQSNAREQDMLLPIANVSRIMKKALPANAKISKDAKETLQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVDPLKIHLMKYREMEGEKSSMGRQGDKDSHAVSSGGGGGVRSGDDGSGFNGGEMYGGMMMMGHSNQMYGTDGYNNHRGTGGGKGGSGGSGGGRR 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9924263 9927221 - Conep12aG0135300.1 Cone12ag1312 450156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1312 189 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 11 153 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
Cone12ag1312 189 MobiDBLite consensus disorder prediction 1 21 - -
Cone12ag1312 189 SUPERFAMILY Histone-fold 20 123 IPR009072 GO:0046982(InterPro)
Cone12ag1312 189 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 87 IPR003958 -
Cone12ag1312 189 PRINTS CCAAT-binding transcription factor subunit A signature 51 69 - -
Cone12ag1312 189 PRINTS CCAAT-binding transcription factor subunit A signature 89 107 - -
Cone12ag1312 189 PRINTS CCAAT-binding transcription factor subunit A signature 70 88 - -
Cone12ag1312 189 FunFam Nuclear transcription factor Y subunit B-3 12 132 - -
Cone12ag1312 189 ProSitePatterns NF-YB/HAP3 subunit signature. 54 70 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone12ag1312 189 Gene3D Histone, subunit A 11 129 IPR009072 GO:0046982(InterPro)
Cone12ag1312 189 MobiDBLite consensus disorder prediction 112 189 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0264 Cone-Chr10:1261543 Cone12ag1312 Cone-Chr12:9924263 1.09E-58 dispersed
Cone12ag0762 Cone-Chr12:7020540 Cone12ag1312 Cone-Chr12:9924263 3.75E-55 dispersed
Cone12ag1312 Cone-Chr12:9924263 Cone14ag1217 Cone-Chr14:9905417 3.02E-63 dispersed
Cone9ag1230 Cone-Chr9:8978709 Cone12ag1312 Cone-Chr12:9924263 3.44E-42 transposed
Cone12ag1312 Cone-Chr12:9924263 Cone8ag1366 Cone-Chr8:10907603 2.02E-105 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44529 PF00022 Actin 1.40E-22 CL0108 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1312 K08065 - cit:102616254 234.572