Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1314 ATGGAAGAAGGAAGTAGACAGATGTCTTCGAAGTCAACAGACAAGACGAATACAAACTGTTCCCGGAGCAGCTCCGCTCGATCCAAACTTGGAGCCCGCATGGTTGCTCAGACCCCTGTTGATGCAAAGCTCCATGTCGATTTTGAAGAATCAGAAAAACTTTTCAATTACTCCACTTCAATAGATTTCAACACCTCCACTTATACTAGCAATGTCCCCTCCTCCACTGTATCGGCTTATCTCCAGAAGATGCAAAGAGGAAGGCTAATTCAACCATTCGGTTGTATGATTGCAGTTGATGAAGAGAATTTCTCCATTCTAGCTTACAGCAAAAATGCTCCTGAAATGTTGGACCTGGCCCCACATGCCGTTCCTAGTATCGAACAGAAAGAAGCACTTAGCTTCAGAACAGATGTTAGGTCCCTTTTTCGGCCTTCAGGCTCAGCTGCCTTGCAAAAAGCAGCCAATTTTAGAGAAGTGAATCTTCTAAACCCAATATTACTTCATTGCAAAAACTCAGGTAAGCCCTTCTATGCAATTCTGCACAGAATCGATGTGGGTTTAGTCATAGATTTGGAGCCAGTAAATCCTGCAGATGTACCCGTGACAGCTGCCGGAGCATTAAAATCGTATAAGCTTGCAGCCAAAGCAATCTCTAGATTGCAATCTTTGCCTAGTGGTAATATATCTATATTATGTGATGTATTGGTTAAGGAAGTTTGTGATTTGATGGGTTACGATAGAGTAATGGTGTACAAATTTCACGACGATGAACATGGAGAAGTGGTAGCAGAATGGCGTAGGCCTGACTTGGAGCCTTATCTAGGTTTGCATTACCCGTCTACTGATATACCTCAAGCTTCTAGGTTTCTCTTTATGAAGAATAAGGTCAGGATGATATGTGATTGTTTAGCACCTTCAGTTGAAGTGGTTCAAGATAGTGGACTGGCTCAACCATTGAGTCTTGCAGGGTCTACTTTGAGGTCTCCTCACGGTTGTCATGCACAGTATATGGCTAACATGGGTTCTATTGCGTCTCTTGTAATGTCTGTCGTGATAAACGAGGAAGATGATGGGGTGGCAAATGATCAGCCAAAGGGAAGAAAACTATGGGGTCTAGTGGTTTGTCACCATGCGAGCCCTAGATTTGTTCCATTCCCTTTGAGATATGCTTGTGAGTTTCTGATTCAAGTCTTTGGAGTTCAAATGAATAAAGAGGTTGAACTGGCCGCTCAGTTGAGGGAAAAACACATTTTGCAAACTCAAACCGTCCTTTGTGATATGCTTCTTAGGGATGCTCCAGTTGGAATCGTCAGTCATTCTCCGAATATAATGGATTTAGTGAAGTGTGATGGAGCCGCCCTTTTTTATAGGAAGAAAACTTGGTTGCTTGGAGTCACTCCAAGTGAGGAACAAATCCGGGATTTAGCCGATTGGCTTATTGAACACCATAGTGGGAGCACGGGATTAAGTACGGATAGTCTTATGGAAGCTGGCTATCCAGGTGCTTCGGATCTAGGCGATGAGGTTTGTGGAATGGCTGCTGTTAGAATTACAGCTAAAGATTTCATCTTTTGGTTCCGGTCCCACACAGGGAAGGAAATCAAGTGGGGTGGGGCCAAAAACGACCCAGACGACAAGGATGATGGAAGGAAAATGCACCCGAGATCGTCTTTCAAGGCTTTTTTAGAGGTGGTGAAGAGGCGTAGTCAACCTTGGGAGGATGTGGAAATGGATGCTATTCATTCGATTCAGTTGATATTGAGAGGCTCTTTGCAAGATGAGGTGGAGGATTCTAAGATGATTGTGAATGTCCCGTCAGGTGATGATGATGGTATGCAGAGAGGGGATGAGTTACAGATTATTACAAGCGAAATGGTTCGTTTAATAGAGACAGCTGCTGTCCCCATCTTGGCCATAGATTCTTCAGGTAATATTAATGGGTGGAATTCCAAAGCTACTGAATTGACTGGATTGCCCGTCCAGCAAGCCGTTACCATGACCTTGTTTGATGTTGTTGTGGATGATTCGGTTGATGTCATGAAGAACATGCTCTCCTTGGCTTTGCAAGGTATAGAAGACCAAAAAATTGAATTGAAATTGAAAACATTTGGGGATAAGGAAAGAAGTGGGCCCGTGATCTTGGTAGCTAATGCGTGTTGTAGCCGAGACATGAACGAAAACATTGTAGGGCTTTGCTTTGTGGGCCAGGATGTTACGGGACAAAGACTGATTATGGACCAATATACACGTATCCAAGGTGATTTTGTTGGGATTATGCGGAGCCCGTCTGCTCTTATCCCTCCGATTTTTATGACCAATGAGGACGGTCAATGCTTGGAATGGAACGATGCAATGCAAAATTTGTCGGGTTTGAGAAGGGAAGATGTGCTAAACCGGATGCTTCTGGGTGAGGTTTTTACAGTCAACAATTTTGGCTGTCGAGTCAAAGACCATGACACTTTGACTAAGCTTAGAATACTATTGAACAAGGTTGTTTCCGGCCAGGAAGCGGATAAATTGTTGTTCGGGTTTTTTGACGGGCAGGGAAACTATGTTGAAGCATTACTGTCAATGAACAAACGGGCTGATTCGGAAGGAAGAATCAGTGGGGTTTTCTGCTTCTTGCATGTGGCTAGTCCCGAGCTTCAATATGCTTTGCAGGTTCAAAGAATATCAGAAGAAGCTACTGCTGATAGCTTGAAGAAATTGGCATATATTAGACGGGAAATTATAAATCCCTTAAATGGGGTTATGTTTATGCAGAGTCTAATGGAATCTTCTGATTTAAGCAAAGAGCAAAAGCGGCTATTGAAATCTAGCTCGTTGTGTCAACAGCAATTAGTCAAGATTGTAGACGACACTGATATCGAAAGTATTGAAGAATGTTACATGGATTTGAACTGTGTCGAGTTTAACCTTGGGGAAGTTCTAGAAACTGTCATTAGCCAAGTAATGATTTTGAGCCAAAAACATCGGGTCCAGATCATACATGAGTCAGCTGCTGATGTGTTATCATTCCACTTGTATGGAGATAATTTGAGGCTTCAACAAGCGCTTGCAGATTTCTTGAGCAATGTCATCATATTCACACCTGCATTTGAAGGATCATCCATTACGCTCAAAGTGACTGCAAGGAAGGAGCATATAGGAACGAAGATTCTCATTGTCCATCTCGAGTTTAGGATCACTCATCCAGCGCCTGGGATTCCAGAGAATTTAATCCAAGAGATGTTCAGGCAAAACCGTAATATATCAAGGGAAGGGGTGGGCTTATTTATAAGCCATAAACTTGTGAAGCTAATGAATGGGAAGGTACAGTACATTAGAGAAGCAGAAAGATCATCCTTTATCATCCTTGTTGAATTTCCGTTGGTCCGTGAAAACGACCGTTGA 3396 42.9 MEEGSRQMSSKSTDKTNTNCSRSSSARSKLGARMVAQTPVDAKLHVDFEESEKLFNYSTSIDFNTSTYTSNVPSSTVSAYLQKMQRGRLIQPFGCMIAVDEENFSILAYSKNAPEMLDLAPHAVPSIEQKEALSFRTDVRSLFRPSGSAALQKAANFREVNLLNPILLHCKNSGKPFYAILHRIDVGLVIDLEPVNPADVPVTAAGALKSYKLAAKAISRLQSLPSGNISILCDVLVKEVCDLMGYDRVMVYKFHDDEHGEVVAEWRRPDLEPYLGLHYPSTDIPQASRFLFMKNKVRMICDCLAPSVEVVQDSGLAQPLSLAGSTLRSPHGCHAQYMANMGSIASLVMSVVINEEDDGVANDQPKGRKLWGLVVCHHASPRFVPFPLRYACEFLIQVFGVQMNKEVELAAQLREKHILQTQTVLCDMLLRDAPVGIVSHSPNIMDLVKCDGAALFYRKKTWLLGVTPSEEQIRDLADWLIEHHSGSTGLSTDSLMEAGYPGASDLGDEVCGMAAVRITAKDFIFWFRSHTGKEIKWGGAKNDPDDKDDGRKMHPRSSFKAFLEVVKRRSQPWEDVEMDAIHSIQLILRGSLQDEVEDSKMIVNVPSGDDDGMQRGDELQIITSEMVRLIETAAVPILAIDSSGNINGWNSKATELTGLPVQQAVTMTLFDVVVDDSVDVMKNMLSLALQGIEDQKIELKLKTFGDKERSGPVILVANACCSRDMNENIVGLCFVGQDVTGQRLIMDQYTRIQGDFVGIMRSPSALIPPIFMTNEDGQCLEWNDAMQNLSGLRREDVLNRMLLGEVFTVNNFGCRVKDHDTLTKLRILLNKVVSGQEADKLLFGFFDGQGNYVEALLSMNKRADSEGRISGVFCFLHVASPELQYALQVQRISEEATADSLKKLAYIRREIINPLNGVMFMQSLMESSDLSKEQKRLLKSSSLCQQQLVKIVDDTDIESIEECYMDLNCVEFNLGEVLETVISQVMILSQKHRVQIIHESAADVLSFHLYGDNLRLQQALADFLSNVIIFTPAFEGSSITLKVTARKEHIGTKILIVHLEFRITHPAPGIPENLIQEMFRQNRNISREGVGLFISHKLVKLMNGKVQYIREAERSSFIILVEFPLVRENDR 1131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9931224 9936184 + Conep12aG0135500.1 Cone12ag1314 450158

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1314 1131 ProSiteProfiles PAS repeat profile. 622 692 IPR000014 -
Cone12ag1314 1131 Pfam PAS fold 625 739 IPR013767 GO:0006355(InterPro)
Cone12ag1314 1131 Pfam PAS fold 765 877 IPR013767 GO:0006355(InterPro)
Cone12ag1314 1131 SUPERFAMILY GAF domain-like 208 404 - -
Cone12ag1314 1131 SUPERFAMILY PYP-like sensor domain (PAS domain) 628 734 IPR035965 -
Cone12ag1314 1131 MobiDBLite consensus disorder prediction 10 31 - -
Cone12ag1314 1131 Gene3D PAS domain 616 753 - -
Cone12ag1314 1131 Pfam Phytochrome region 420 594 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone12ag1314 1131 PIRSF Phytochrome_conventional 10 1131 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
Cone12ag1314 1131 Gene3D - 412 585 IPR043150 -
Cone12ag1314 1131 Pfam GAF domain 232 405 IPR003018 GO:0005515(InterPro)
Cone12ag1314 1131 Gene3D - 209 568 IPR029016 -
Cone12ag1314 1131 SMART gaf_1 228 417 IPR003018 GO:0005515(InterPro)
Cone12ag1314 1131 CDD PAS 633 739 IPR000014 -
Cone12ag1314 1131 CDD HATPase_Phy-like 1010 1123 IPR044767 -
Cone12ag1314 1131 Gene3D PAS domain 768 880 - -
Cone12ag1314 1131 FunFam Phytochrome 412 543 - -
Cone12ag1314 1131 ProSitePatterns Phytochrome chromophore attachment site signature. 328 337 IPR013516 -
Cone12ag1314 1131 Pfam PAS fold 79 195 IPR013654 GO:0006355(InterPro)
Cone12ag1314 1131 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 228 397 IPR016132 -
Cone12ag1314 1131 Pfam His Kinase A (phospho-acceptor) domain 904 962 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone12ag1314 1131 PRINTS Phytochrome signature 522 541 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone12ag1314 1131 PRINTS Phytochrome signature 625 641 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone12ag1314 1131 PRINTS Phytochrome signature 717 734 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone12ag1314 1131 PRINTS Phytochrome signature 644 659 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone12ag1314 1131 PRINTS Phytochrome signature 737 757 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone12ag1314 1131 PRINTS Phytochrome signature 243 262 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone12ag1314 1131 PRINTS Phytochrome signature 437 457 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone12ag1314 1131 PRINTS Phytochrome signature 555 573 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone12ag1314 1131 PRINTS Phytochrome signature 143 165 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone12ag1314 1131 PRINTS Phytochrome signature 328 349 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone12ag1314 1131 SUPERFAMILY GAF domain-like 415 593 - -
Cone12ag1314 1131 CDD PAS 766 877 IPR000014 -
Cone12ag1314 1131 ProSiteProfiles PAS repeat profile. 764 807 IPR000014 -
Cone12ag1314 1131 NCBIfam PAS domain S-box protein 629 741 IPR000014 -
Cone12ag1314 1131 FunFam Phytochrome 964 1125 - -
Cone12ag1314 1131 Gene3D PAS domain 87 331 - -
Cone12ag1314 1131 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 967 1119 IPR036890 -
Cone12ag1314 1131 SUPERFAMILY PYP-like sensor domain (PAS domain) 769 874 IPR035965 -
Cone12ag1314 1131 SUPERFAMILY PYP-like sensor domain (PAS domain) 84 197 IPR035965 -
Cone12ag1314 1131 MobiDBLite consensus disorder prediction 1 32 - -
Cone12ag1314 1131 FunFam Phytochrome 618 749 - -
Cone12ag1314 1131 Gene3D - 944 1119 IPR036890 -
Cone12ag1314 1131 ProSiteProfiles Histidine kinase domain profile. 906 1127 IPR005467 -
Cone12ag1314 1131 PANTHER OS08G0260000 PROTEIN 8 999 - -
Cone12ag1314 1131 SMART pas_2 754 824 IPR000014 -
Cone12ag1314 1131 SMART pas_2 624 690 IPR000014 -
Cone12ag1314 1131 SMART HKATPase_4 1011 1127 IPR003594 -
Cone12ag1314 1131 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1011 1125 IPR003594 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1314 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1314 Cone-Chr12:9931224 Cone13ag0806 Cone-Chr13:7423582 0 dispersed
Cone12ag1314 Cone-Chr12:9931224 Cone8ag1368 Cone-Chr8:10914209 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g703 Blo02g00140 Blo15g00444 . . . . . . . Cmo19g00869 . . . . Sed05g2128 Cpe15g00685 . Bhi05g01475 Tan02g0490 Cmetu01g1663 Lac12g0396 . . . Cla02g00291 Cam02g0302 Cec02g0302 Cco02g0306 Clacu02g0294 Cmu02g0290 Cre02g0625 . . Cone8ag1368 Cone12ag1314 . Csa07g00253 . Cme01g00552 . . . . . . . . . . . . Cma19g00854 . Car19g00664 . . . . . . . . . . . . . . . . Lsi11g01345 . Chy01g00529 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone8ag0858 . 19 1108 Histidine Kinase Gene Family AT2G17820 64.8 0.0e+00 1384.4
Cone12ag0821 . 1 1107 Histidine Kinase Gene Family AT2G17820 63.1 0.0e+00 1382.5
Cone6ag0342 . 23 1008 Histidine Kinase Gene Family AT2G01830 71.5 0.0e+00 1354.0
Cone9ag0376 . 23 1002 Histidine Kinase Gene Family AT2G01830 71.7 0.0e+00 1348.6
Cone12ag1329 . 264 1193 Histidine Kinase Gene Family AT2G01830 54.7 4.3e-282 968.4
Cone15ag0619 . 88 1043 Histidine Kinase Gene Family AT2G01830 54.4 2.8e-281 965.7
Cone14ag0613 . 88 1042 Histidine Kinase Gene Family AT2G01830 54.2 6.2e-281 964.5
Cone8ag1386 . 265 1191 Histidine Kinase Gene Family AT2G01830 54.3 9.8e-279 957.2
Cone4ag1716 . 1 1005 Histidine Kinase Gene Family AT5G10720 56.9 1.7e-290 996.1
Cone7ag1634 . 1 1007 Histidine Kinase Gene Family AT5G10720 56.1 1.4e-284 976.5
Cone13ag0806 . 1 1121 Histidine Kinase Gene Family AT1G09570 77.6 0.0e+00 1767.7
Cone19ag0812 . 1 1108 Histidine Kinase Gene Family AT1G09570 76.8 0.0e+00 1748.4
Cone12ag1314 . 21 1122 Histidine Kinase Gene Family AT1G09570 57.3 0.0e+00 1277.3
Cone8ag1368 . 35 1132 Histidine Kinase Gene Family AT1G09570 57.0 0.0e+00 1267.3
Cone14ag0717 . 31 1119 Histidine Kinase Gene Family AT1G09570 54.3 0.0e+00 1177.9
Cone15ag0729 . 31 951 Histidine Kinase Gene Family AT1G09570 56.0 1.7e-305 1046.2
Cone14ag0717 . 5 1060 Histidine Kinase Gene Family AT2G18790 79.1 0.0e+00 1662.5
Cone15ag0729 . 10 966 Histidine Kinase Gene Family AT2G18790 79.0 0.0e+00 1515.7
Cone8ag1368 . 45 1072 Histidine Kinase Gene Family AT2G18790 54.6 0.0e+00 1113.2
Cone12ag1314 . 33 1062 Histidine Kinase Gene Family AT2G18790 55.0 0.0e+00 1112.1
Cone13ag0806 . 20 1056 Histidine Kinase Gene Family AT2G18790 52.3 0.0e+00 1076.6
Cone19ag0812 . 20 1043 Histidine Kinase Gene Family AT2G18790 51.6 7.2e-312 1067.4
Cone12ag1314 . 19 1126 Histidine Kinase Gene Family AT5G35840 63.0 0.0e+00 1410.6
Cone8ag1368 . 29 1136 Histidine Kinase Gene Family AT5G35840 62.9 0.0e+00 1409.0
Cone14ag0717 . 13 1121 Histidine Kinase Gene Family AT5G35840 52.0 0.0e+00 1127.5
Cone13ag0806 . 7 1115 Histidine Kinase Gene Family AT5G35840 50.9 0.0e+00 1106.3
Cone19ag0812 . 7 1102 Histidine Kinase Gene Family AT5G35840 51.2 0.0e+00 1103.2
Cone15ag0729 . 13 951 Histidine Kinase Gene Family AT5G35840 54.3 2.7e-295 1012.3
Cone14ag0717 . 8 1121 Histidine Kinase Gene Family AT4G16250 76.0 0.0e+00 1692.6
Cone15ag0729 . 8 971 Histidine Kinase Gene Family AT4G16250 75.8 0.0e+00 1467.6
Cone12ag1314 . 33 1125 Histidine Kinase Gene Family AT4G16250 53.8 0.0e+00 1151.7
Cone8ag1368 . 45 1135 Histidine Kinase Gene Family AT4G16250 53.5 0.0e+00 1150.6
Cone13ag0806 . 19 1116 Histidine Kinase Gene Family AT4G16250 52.4 0.0e+00 1113.6
Cone19ag0812 . 19 1103 Histidine Kinase Gene Family AT4G16250 51.9 0.0e+00 1107.4
Cone14ag0717 . 12 1119 Histidine Kinase Gene Family AT4G18130 58.7 0.0e+00 1272.7
Cone15ag0729 . 12 949 Histidine Kinase Gene Family AT4G18130 60.8 0.0e+00 1108.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005493 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 7 1 40