Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1314 ATGGAAGAAGGAAGTAGACAGATGTCTTCGAAGTCAACAGACAAGACGAATACAAACTGTTCCCGGAGCAGCTCCGCTCGATCCAAACTTGGAGCCCGCATGGTTGCTCAGACCCCTGTTGATGCAAAGCTCCATGTCGATTTTGAAGAATCAGAAAAACTTTTCAATTACTCCACTTCAATAGATTTCAACACCTCCACTTATACTAGCAATGTCCCCTCCTCCACTGTATCGGCTTATCTCCAGAAGATGCAAAGAGGAAGGCTAATTCAACCATTCGGTTGTATGATTGCAGTTGATGAAGAGAATTTCTCCATTCTAGCTTACAGCAAAAATGCTCCTGAAATGTTGGACCTGGCCCCACATGCCGTTCCTAGTATCGAACAGAAAGAAGCACTTAGCTTCAGAACAGATGTTAGGTCCCTTTTTCGGCCTTCAGGCTCAGCTGCCTTGCAAAAAGCAGCCAATTTTAGAGAAGTGAATCTTCTAAACCCAATATTACTTCATTGCAAAAACTCAGGTAAGCCCTTCTATGCAATTCTGCACAGAATCGATGTGGGTTTAGTCATAGATTTGGAGCCAGTAAATCCTGCAGATGTACCCGTGACAGCTGCCGGAGCATTAAAATCGTATAAGCTTGCAGCCAAAGCAATCTCTAGATTGCAATCTTTGCCTAGTGGTAATATATCTATATTATGTGATGTATTGGTTAAGGAAGTTTGTGATTTGATGGGTTACGATAGAGTAATGGTGTACAAATTTCACGACGATGAACATGGAGAAGTGGTAGCAGAATGGCGTAGGCCTGACTTGGAGCCTTATCTAGGTTTGCATTACCCGTCTACTGATATACCTCAAGCTTCTAGGTTTCTCTTTATGAAGAATAAGGTCAGGATGATATGTGATTGTTTAGCACCTTCAGTTGAAGTGGTTCAAGATAGTGGACTGGCTCAACCATTGAGTCTTGCAGGGTCTACTTTGAGGTCTCCTCACGGTTGTCATGCACAGTATATGGCTAACATGGGTTCTATTGCGTCTCTTGTAATGTCTGTCGTGATAAACGAGGAAGATGATGGGGTGGCAAATGATCAGCCAAAGGGAAGAAAACTATGGGGTCTAGTGGTTTGTCACCATGCGAGCCCTAGATTTGTTCCATTCCCTTTGAGATATGCTTGTGAGTTTCTGATTCAAGTCTTTGGAGTTCAAATGAATAAAGAGGTTGAACTGGCCGCTCAGTTGAGGGAAAAACACATTTTGCAAACTCAAACCGTCCTTTGTGATATGCTTCTTAGGGATGCTCCAGTTGGAATCGTCAGTCATTCTCCGAATATAATGGATTTAGTGAAGTGTGATGGAGCCGCCCTTTTTTATAGGAAGAAAACTTGGTTGCTTGGAGTCACTCCAAGTGAGGAACAAATCCGGGATTTAGCCGATTGGCTTATTGAACACCATAGTGGGAGCACGGGATTAAGTACGGATAGTCTTATGGAAGCTGGCTATCCAGGTGCTTCGGATCTAGGCGATGAGGTTTGTGGAATGGCTGCTGTTAGAATTACAGCTAAAGATTTCATCTTTTGGTTCCGGTCCCACACAGGGAAGGAAATCAAGTGGGGTGGGGCCAAAAACGACCCAGACGACAAGGATGATGGAAGGAAAATGCACCCGAGATCGTCTTTCAAGGCTTTTTTAGAGGTGGTGAAGAGGCGTAGTCAACCTTGGGAGGATGTGGAAATGGATGCTATTCATTCGATTCAGTTGATATTGAGAGGCTCTTTGCAAGATGAGGTGGAGGATTCTAAGATGATTGTGAATGTCCCGTCAGGTGATGATGATGGTATGCAGAGAGGGGATGAGTTACAGATTATTACAAGCGAAATGGTTCGTTTAATAGAGACAGCTGCTGTCCCCATCTTGGCCATAGATTCTTCAGGTAATATTAATGGGTGGAATTCCAAAGCTACTGAATTGACTGGATTGCCCGTCCAGCAAGCCGTTACCATGACCTTGTTTGATGTTGTTGTGGATGATTCGGTTGATGTCATGAAGAACATGCTCTCCTTGGCTTTGCAAGGTATAGAAGACCAAAAAATTGAATTGAAATTGAAAACATTTGGGGATAAGGAAAGAAGTGGGCCCGTGATCTTGGTAGCTAATGCGTGTTGTAGCCGAGACATGAACGAAAACATTGTAGGGCTTTGCTTTGTGGGCCAGGATGTTACGGGACAAAGACTGATTATGGACCAATATACACGTATCCAAGGTGATTTTGTTGGGATTATGCGGAGCCCGTCTGCTCTTATCCCTCCGATTTTTATGACCAATGAGGACGGTCAATGCTTGGAATGGAACGATGCAATGCAAAATTTGTCGGGTTTGAGAAGGGAAGATGTGCTAAACCGGATGCTTCTGGGTGAGGTTTTTACAGTCAACAATTTTGGCTGTCGAGTCAAAGACCATGACACTTTGACTAAGCTTAGAATACTATTGAACAAGGTTGTTTCCGGCCAGGAAGCGGATAAATTGTTGTTCGGGTTTTTTGACGGGCAGGGAAACTATGTTGAAGCATTACTGTCAATGAACAAACGGGCTGATTCGGAAGGAAGAATCAGTGGGGTTTTCTGCTTCTTGCATGTGGCTAGTCCCGAGCTTCAATATGCTTTGCAGGTTCAAAGAATATCAGAAGAAGCTACTGCTGATAGCTTGAAGAAATTGGCATATATTAGACGGGAAATTATAAATCCCTTAAATGGGGTTATGTTTATGCAGAGTCTAATGGAATCTTCTGATTTAAGCAAAGAGCAAAAGCGGCTATTGAAATCTAGCTCGTTGTGTCAACAGCAATTAGTCAAGATTGTAGACGACACTGATATCGAAAGTATTGAAGAATGTTACATGGATTTGAACTGTGTCGAGTTTAACCTTGGGGAAGTTCTAGAAACTGTCATTAGCCAAGTAATGATTTTGAGCCAAAAACATCGGGTCCAGATCATACATGAGTCAGCTGCTGATGTGTTATCATTCCACTTGTATGGAGATAATTTGAGGCTTCAACAAGCGCTTGCAGATTTCTTGAGCAATGTCATCATATTCACACCTGCATTTGAAGGATCATCCATTACGCTCAAAGTGACTGCAAGGAAGGAGCATATAGGAACGAAGATTCTCATTGTCCATCTCGAGTTTAGGATCACTCATCCAGCGCCTGGGATTCCAGAGAATTTAATCCAAGAGATGTTCAGGCAAAACCGTAATATATCAAGGGAAGGGGTGGGCTTATTTATAAGCCATAAACTTGTGAAGCTAATGAATGGGAAGGTACAGTACATTAGAGAAGCAGAAAGATCATCCTTTATCATCCTTGTTGAATTTCCGTTGGTCCGTGAAAACGACCGTTGA 3396 42.9 MEEGSRQMSSKSTDKTNTNCSRSSSARSKLGARMVAQTPVDAKLHVDFEESEKLFNYSTSIDFNTSTYTSNVPSSTVSAYLQKMQRGRLIQPFGCMIAVDEENFSILAYSKNAPEMLDLAPHAVPSIEQKEALSFRTDVRSLFRPSGSAALQKAANFREVNLLNPILLHCKNSGKPFYAILHRIDVGLVIDLEPVNPADVPVTAAGALKSYKLAAKAISRLQSLPSGNISILCDVLVKEVCDLMGYDRVMVYKFHDDEHGEVVAEWRRPDLEPYLGLHYPSTDIPQASRFLFMKNKVRMICDCLAPSVEVVQDSGLAQPLSLAGSTLRSPHGCHAQYMANMGSIASLVMSVVINEEDDGVANDQPKGRKLWGLVVCHHASPRFVPFPLRYACEFLIQVFGVQMNKEVELAAQLREKHILQTQTVLCDMLLRDAPVGIVSHSPNIMDLVKCDGAALFYRKKTWLLGVTPSEEQIRDLADWLIEHHSGSTGLSTDSLMEAGYPGASDLGDEVCGMAAVRITAKDFIFWFRSHTGKEIKWGGAKNDPDDKDDGRKMHPRSSFKAFLEVVKRRSQPWEDVEMDAIHSIQLILRGSLQDEVEDSKMIVNVPSGDDDGMQRGDELQIITSEMVRLIETAAVPILAIDSSGNINGWNSKATELTGLPVQQAVTMTLFDVVVDDSVDVMKNMLSLALQGIEDQKIELKLKTFGDKERSGPVILVANACCSRDMNENIVGLCFVGQDVTGQRLIMDQYTRIQGDFVGIMRSPSALIPPIFMTNEDGQCLEWNDAMQNLSGLRREDVLNRMLLGEVFTVNNFGCRVKDHDTLTKLRILLNKVVSGQEADKLLFGFFDGQGNYVEALLSMNKRADSEGRISGVFCFLHVASPELQYALQVQRISEEATADSLKKLAYIRREIINPLNGVMFMQSLMESSDLSKEQKRLLKSSSLCQQQLVKIVDDTDIESIEECYMDLNCVEFNLGEVLETVISQVMILSQKHRVQIIHESAADVLSFHLYGDNLRLQQALADFLSNVIIFTPAFEGSSITLKVTARKEHIGTKILIVHLEFRITHPAPGIPENLIQEMFRQNRNISREGVGLFISHKLVKLMNGKVQYIREAERSSFIILVEFPLVRENDR 1131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9931224 9936184 + Conep12aG0135500.1 Cone12ag1314 450158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1314 1131 ProSiteProfiles PAS repeat profile. 622 692 IPR000014 -
Cone12ag1314 1131 Pfam PAS fold 625 739 IPR013767 GO:0006355(InterPro)
Cone12ag1314 1131 Pfam PAS fold 765 877 IPR013767 GO:0006355(InterPro)
Cone12ag1314 1131 SUPERFAMILY GAF domain-like 208 404 - -
Cone12ag1314 1131 SUPERFAMILY PYP-like sensor domain (PAS domain) 628 734 IPR035965 -
Cone12ag1314 1131 MobiDBLite consensus disorder prediction 10 31 - -
Cone12ag1314 1131 Gene3D PAS domain 616 753 - -
Cone12ag1314 1131 Pfam Phytochrome region 420 594 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone12ag1314 1131 PIRSF Phytochrome_conventional 10 1131 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
Cone12ag1314 1131 Gene3D - 412 585 IPR043150 -
Cone12ag1314 1131 Pfam GAF domain 232 405 IPR003018 GO:0005515(InterPro)
Cone12ag1314 1131 Gene3D - 209 568 IPR029016 -
Cone12ag1314 1131 SMART gaf_1 228 417 IPR003018 GO:0005515(InterPro)
Cone12ag1314 1131 CDD PAS 633 739 IPR000014 -
Cone12ag1314 1131 CDD HATPase_Phy-like 1010 1123 IPR044767 -
Cone12ag1314 1131 Gene3D PAS domain 768 880 - -
Cone12ag1314 1131 FunFam Phytochrome 412 543 - -
Cone12ag1314 1131 ProSitePatterns Phytochrome chromophore attachment site signature. 328 337 IPR013516 -
Cone12ag1314 1131 Pfam PAS fold 79 195 IPR013654 GO:0006355(InterPro)
Cone12ag1314 1131 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 228 397 IPR016132 -
Cone12ag1314 1131 Pfam His Kinase A (phospho-acceptor) domain 904 962 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone12ag1314 1131 PRINTS Phytochrome signature 522 541 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone12ag1314 1131 PRINTS Phytochrome signature 625 641 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone12ag1314 1131 PRINTS Phytochrome signature 717 734 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone12ag1314 1131 PRINTS Phytochrome signature 644 659 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone12ag1314 1131 PRINTS Phytochrome signature 737 757 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone12ag1314 1131 PRINTS Phytochrome signature 243 262 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone12ag1314 1131 PRINTS Phytochrome signature 437 457 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone12ag1314 1131 PRINTS Phytochrome signature 555 573 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone12ag1314 1131 PRINTS Phytochrome signature 143 165 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone12ag1314 1131 PRINTS Phytochrome signature 328 349 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone12ag1314 1131 SUPERFAMILY GAF domain-like 415 593 - -
Cone12ag1314 1131 CDD PAS 766 877 IPR000014 -
Cone12ag1314 1131 ProSiteProfiles PAS repeat profile. 764 807 IPR000014 -
Cone12ag1314 1131 NCBIfam PAS domain S-box protein 629 741 IPR000014 -
Cone12ag1314 1131 FunFam Phytochrome 964 1125 - -
Cone12ag1314 1131 Gene3D PAS domain 87 331 - -
Cone12ag1314 1131 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 967 1119 IPR036890 -
Cone12ag1314 1131 SUPERFAMILY PYP-like sensor domain (PAS domain) 769 874 IPR035965 -
Cone12ag1314 1131 SUPERFAMILY PYP-like sensor domain (PAS domain) 84 197 IPR035965 -
Cone12ag1314 1131 MobiDBLite consensus disorder prediction 1 32 - -
Cone12ag1314 1131 FunFam Phytochrome 618 749 - -
Cone12ag1314 1131 Gene3D - 944 1119 IPR036890 -
Cone12ag1314 1131 ProSiteProfiles Histidine kinase domain profile. 906 1127 IPR005467 -
Cone12ag1314 1131 PANTHER OS08G0260000 PROTEIN 8 999 - -
Cone12ag1314 1131 SMART pas_2 754 824 IPR000014 -
Cone12ag1314 1131 SMART pas_2 624 690 IPR000014 -
Cone12ag1314 1131 SMART HKATPase_4 1011 1127 IPR003594 -
Cone12ag1314 1131 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1011 1125 IPR003594 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1314 Cone-Chr12:9931224 Cone13ag0806 Cone-Chr13:7423582 0 dispersed
Cone12ag1314 Cone-Chr12:9931224 Cone8ag1368 Cone-Chr8:10914209 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1314 - - - 0.0