Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone12ag1329 | ATGAGCTGTTCTGCTAGAGTTGGGATTATTCGGAAGCTTTCAAGGCTGTTAGTGAAGATTCATCCTAAGTGGGTTTTACTGAGGATGTCTCTGAATTGCAAGTTCCCTTGTTCTAACGGCAGAATGAAGTCTGGGTTTAAGTTGAAGAAAGCAAGTGAACATTTTCATGGACATAACACTAATTCTGCCGCAAAATGGAGAAAGCTTATTTCTGTATGGCTGTTAGGAGGGGTTATAATTTTAGGCATTTGGTTTTTCTGGAATTTGTATGATAATGGAATCAAAATGAAGCATTCGGGCTCATGTGACGAAAAAGCTCAAATCTTGTTCGAGCATTTCAATGTCAGTAAGAATTTTCTTCATGCTCTATCATCTGACTTTCCTGAATCAGATCAGGTATTTTGTTCAAACAACCAAGGCTTACAAAAGCAAATAAGATTGCCCCCAGAATCTGAAGATTCCAATGAAGATCAGTGCCCCGTTCAAGATGACAATCTCTCCATTTCAAATGTATCATACTGTGTGAAAGAGCATTACAGAAGTTTGTGTAGTTTGGTAATAGGAGGTTTATTGTTCCTTACTGGAGTGATTGTAGGTAGTAACATGTTTGGTTCTTATTTAAGAAAATTGTGGAGGAAAAGCAACGGGCAGAAGGTGGCTGTTATTCAGCCCCCTGTTCATCCTCCAGTTCCGGCACAGAAGAAGCAGCACCACTCACTGGAAAGCGCTGCTAGAGGCAGTGCTGGAAACTGGAGAATGAAACTGCTAGTAGTAGGTGTGACAGCTGGGATTGTTGGCTCCATTTGGATTTTCATGCACATGACTAACGAAAATATTTCAAGAAGAGTTGAAACACTTGCCAGTATGTGTGATGAGCGGGCCCGGATGTTACAAGACCAGTTCAATGTCAGCATGAACCATGTCCATGCTTTGGCGGTTCTTGTCTCTACTTTCCACCATAGAAAGCATCCTTCTGCTATGGATCAGAAAACATTTGGGGAATATACGGAGAGAACAGCATTTGAGAGACCTCTGACTAGTGGTGTGGCTTATGCCTTAAAAGTCAAGCACTCAGAAAGAGAGCAATTTGAGAAGAGGCATGGGTGGACAATAAAGAAAATGGGAACAGAGGACCAAACCTTAGTTCAGGATTGTTTTCTGGAGAATTTGGATCCTGCTCCCATTCAAGATGAATATGCACCGGTTATATTTTCGCAAGAAACTGTTTCGCACATCGTCTCTATTGATATGATGTCAGGAAAGGAAGACCGTGAAAACATTTTACGTGCAAGGGCATCTGGGAAGGGAGTTCTAACATCTCCTTTTATGCTATTGAAATCCAATCACTTGGGCGTTGTGCTAACTTTTGCTGTCTATGACACTAAACTTTCTCCACAAGCCACTCCTGAGCAACGTATTGAAGCTACTGTCGGGTATCTGGGAGCATCATATGATGTCCCCTCATTGGTTGAGAAGCTTCTCCATCAGCTTGCTAGCAAGCAAACAATTTTTGTGAATGTTTACGATACAACTAATGCATCTGATCTCATCAATATGTATGGACCGGATGTGATTGATACTGGTCTAGTGCACGTTAGTAGCCTTGATTTTGGAGATCCACAGAGAAAGCATGAGATGCATTGCAGATTTACGCAGAAATCTCCTATTCCTTGGACAGCGATTAACTCATCACTTGGAGTCCTTGTCATTACTTTGCTTGTGGGCCATATTTTTCATGCAGCAATAATTAGAATTGCGAAAGTGGAGAATGACTATAGGGAGATGATGGAGCTAAAAGTCCGTGCCGAAGCTGCTGATGTGGCAAAATCTCAGTTTCTTGCAACTGTTTCTCACGAGATCAGAACACCAATGAATGGTGTTTTAGGTATGCTGCAAATGCTCATGGACACTGACCTTGATTCAAACCAATTGGATTATGCTCATACAGCTTATGAAAGTGGCAAGGATCTGATTTCCCTTATAAATGAGGTTCTTGATCAGGCTAAGATAGAATCAGGCAGGCTTGAACTTGAAGCCGTACCTTTCAATCTACGTACTATACTCGATAATGTTCTCTCGCTTTTCTCAGGAAAATCTAATGACAAAGGGATCGAGTTGGCTGTTTATGTCTCGAATCTGGTGCCTGAGATTCTCATCGGCGATCCTTCTCGTTTCCAGCAAATAATTACAAACCTTGTAGGAAATTCCATAAAGTTCACTCATGACAGAGGGCATATATTTGTCTCCGTACATCTAGCAGATGAAGTGAGGGGCCCACATGATGAAATGGACAAAGTGCTAAGGCAAGGCTCGGATTTTATTCAAGAAAACACAGCAACAACAACTAATAACTCGTTGAGTGGATCCCCTGTGGTTGACAGATGGAAAAGTTGGGAACAATTTAAAATCTTTAGTAAAAATGAAGCAATGGATGAAGATGAAATCAAATTACTAGTCACGGTAGAGGATACAGGTGTAGGGATTCCTCTATATGCACAAAGCCGGATTTTCACGCCTTTCATGCAAGCTGACAGTTCTACTTCTCGGACCTATGGTGGGACTGGAATAGGACTGAGCATTAGCAAATGTCTGGTAGATCTCATGGGTGGGGAGATAGGATTTGTGAGCGAGCCTGGAACTGGTAGCACTTTCTCATTTACTGGATCTTTCCGGAAAGAAACTTCAAGTTCTCTAGATCTAAACAGGCCACAATATGATCCAATTCTGACAGATTTCAAAGGATTGAGAGCACTGATAATTGATAATGGAAGCATTCGGGCTGAGGTCACCAAATATCATCTACAGAGATTGGGAATCTCAGTAGATATAGTTTCCAGCATAGAATCTTCATCCCCAAGTTCCTTCACTAATGTATCGGTTGTTCTTATCGACAAAGATGTATGGGATGAGGAAAAATGTCTAAAACTTCATTGTTCTCTCAAAGAGCATCCAAATGAGCCAAAACTTTTTCTTTTGGCTACGTCTATTTGCTCACAAGAACGGAATGAACTCAAGTCAGTCGGGTATATAAACAAGATATTGGTAAAGCCACTTCGGTTTAGTGTCTTGATTGGATGCTTCCAGGAAATCCTCGGAAATGGTAAGAAAAGGCAAGACTACAGGAAAAAGCCATCTACTGTTGGGAAACTACTTAGAGGAAAGCGAATATTAGTAGTTGATGACAATGCAGTTAATAGAAGAGTAGCAGAAGGAGCTCTAAAGAAATACGGAGCAATTGTTACTTGTGTGGAAAGTGGGCGAGCTGCTCTTTCCATGCTCAAGCCTCCGCATTCATTTGACGCATGCTTCATGGATCTCCAAATGCCAGAGATGGATGGTTTTGAAGCAACAAGGCAGACTAGATGTTTAGAAGGGCTGGTAAATAAAATAATTGAATCAGGAGAGGCTTCAAATAAGACGTTTGGAAATGTAGCCCATTGGCACACACCTATACTGGCCATGACAGCTGATGTAATACAGGCTACGAATGAAGAGTGCATTAAGTGTGGGATGGATGGTTACGTATCTAAACCTTTTGATGAAGAACAGCTTTATTCAGCAGTCGCACGATTCTTCGAGTCTGATTGA | 3588 | 41.44 | MSCSARVGIIRKLSRLLVKIHPKWVLLRMSLNCKFPCSNGRMKSGFKLKKASEHFHGHNTNSAAKWRKLISVWLLGGVIILGIWFFWNLYDNGIKMKHSGSCDEKAQILFEHFNVSKNFLHALSSDFPESDQVFCSNNQGLQKQIRLPPESEDSNEDQCPVQDDNLSISNVSYCVKEHYRSLCSLVIGGLLFLTGVIVGSNMFGSYLRKLWRKSNGQKVAVIQPPVHPPVPAQKKQHHSLESAARGSAGNWRMKLLVVGVTAGIVGSIWIFMHMTNENISRRVETLASMCDERARMLQDQFNVSMNHVHALAVLVSTFHHRKHPSAMDQKTFGEYTERTAFERPLTSGVAYALKVKHSEREQFEKRHGWTIKKMGTEDQTLVQDCFLENLDPAPIQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTSPFMLLKSNHLGVVLTFAVYDTKLSPQATPEQRIEATVGYLGASYDVPSLVEKLLHQLASKQTIFVNVYDTTNASDLINMYGPDVIDTGLVHVSSLDFGDPQRKHEMHCRFTQKSPIPWTAINSSLGVLVITLLVGHIFHAAIIRIAKVENDYREMMELKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTDLDSNQLDYAHTAYESGKDLISLINEVLDQAKIESGRLELEAVPFNLRTILDNVLSLFSGKSNDKGIELAVYVSNLVPEILIGDPSRFQQIITNLVGNSIKFTHDRGHIFVSVHLADEVRGPHDEMDKVLRQGSDFIQENTATTTNNSLSGSPVVDRWKSWEQFKIFSKNEAMDEDEIKLLVTVEDTGVGIPLYAQSRIFTPFMQADSSTSRTYGGTGIGLSISKCLVDLMGGEIGFVSEPGTGSTFSFTGSFRKETSSSLDLNRPQYDPILTDFKGLRALIIDNGSIRAEVTKYHLQRLGISVDIVSSIESSSPSSFTNVSVVLIDKDVWDEEKCLKLHCSLKEHPNEPKLFLLATSICSQERNELKSVGYINKILVKPLRFSVLIGCFQEILGNGKKRQDYRKKPSTVGKLLRGKRILVVDDNAVNRRVAEGALKKYGAIVTCVESGRAALSMLKPPHSFDACFMDLQMPEMDGFEATRQTRCLEGLVNKIIESGEASNKTFGNVAHWHTPILAMTADVIQATNEECIKCGMDGYVSKPFDEEQLYSAVARFFESD | 1195 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 10018207 | 10024863 | + | Conep12aG0137000.1 | Cone12ag1329 | 450173 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone12ag1329 | 1195 | PRINTS | Bacterial sensor protein C-terminal signature | 876 | 889 | IPR004358 | GO:0016310(InterPro)|GO:0016772(InterPro) | |
Cone12ag1329 | 1195 | PRINTS | Bacterial sensor protein C-terminal signature | 835 | 845 | IPR004358 | GO:0016310(InterPro)|GO:0016772(InterPro) | |
Cone12ag1329 | 1195 | PRINTS | Bacterial sensor protein C-terminal signature | 852 | 870 | IPR004358 | GO:0016310(InterPro)|GO:0016772(InterPro) | |
Cone12ag1329 | 1195 | PRINTS | Bacterial sensor protein C-terminal signature | 817 | 831 | IPR004358 | GO:0016310(InterPro)|GO:0016772(InterPro) | |
Cone12ag1329 | 1195 | Coils | Coil | 585 | 605 | - | - | |
Cone12ag1329 | 1195 | SUPERFAMILY | CheY-like | 908 | 1043 | IPR011006 | - | |
Cone12ag1329 | 1195 | SUPERFAMILY | CheY-like | 1051 | 1192 | IPR011006 | - | |
Cone12ag1329 | 1195 | SUPERFAMILY | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 662 | 887 | IPR036890 | - | |
Cone12ag1329 | 1195 | CDD | HATPase_EvgS-ArcB-TorS-like | 725 | 887 | - | - | |
Cone12ag1329 | 1195 | CDD | REC_hyHK_CKI1_RcsC-like | 1056 | 1188 | - | - | |
Cone12ag1329 | 1195 | ProSiteProfiles | Histidine kinase domain profile. | 615 | 892 | IPR005467 | - | |
Cone12ag1329 | 1195 | SMART | HisKA_10 | 608 | 673 | IPR003661 | GO:0000155(InterPro)|GO:0007165(InterPro) | |
Cone12ag1329 | 1195 | FunFam | Histidine kinase 4 | 580 | 671 | - | - | |
Cone12ag1329 | 1195 | Pfam | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | 815 | 887 | IPR003594 | - | |
Cone12ag1329 | 1195 | CDD | HisKA | 608 | 669 | IPR003661 | GO:0000155(InterPro)|GO:0007165(InterPro) | |
Cone12ag1329 | 1195 | Gene3D | - | 580 | 671 | - | - | |
Cone12ag1329 | 1195 | Gene3D | - | 1049 | 1195 | - | - | |
Cone12ag1329 | 1195 | Pfam | CHASE domain | 326 | 520 | IPR006189 | - | |
Cone12ag1329 | 1195 | Pfam | His Kinase A (phospho-acceptor) domain | 608 | 673 | IPR003661 | GO:0000155(InterPro)|GO:0007165(InterPro) | |
Cone12ag1329 | 1195 | SMART | REC_2 | 1054 | 1188 | IPR001789 | GO:0000160(InterPro) | |
Cone12ag1329 | 1195 | SMART | CHASE_2 | 323 | 522 | IPR006189 | - | |
Cone12ag1329 | 1195 | PANTHER | TWO-COMPONENT HISTIDINE KINASE | 252 | 1191 | IPR050956 | - | |
Cone12ag1329 | 1195 | Pfam | Response regulator receiver domain | 1056 | 1138 | IPR001789 | GO:0000160(InterPro) | |
Cone12ag1329 | 1195 | Gene3D | CHASE domain | 327 | 554 | IPR042240 | - | |
Cone12ag1329 | 1195 | ProSiteProfiles | CHASE domain profile. | 323 | 547 | IPR006189 | - | |
Cone12ag1329 | 1195 | SMART | HKATPase_4 | 720 | 892 | IPR003594 | - | |
Cone12ag1329 | 1195 | FunFam | Histidine kinase 4 | 327 | 554 | - | - | |
Cone12ag1329 | 1195 | ProSiteProfiles | Response regulatory domain profile. | 1055 | 1192 | IPR001789 | GO:0000160(InterPro) | |
Cone12ag1329 | 1195 | SUPERFAMILY | Homodimeric domain of signal transducing histidine kinase | 593 | 674 | IPR036097 | GO:0000155(InterPro)|GO:0007165(InterPro) | |
Cone12ag1329 | 1195 | Gene3D | - | 672 | 894 | IPR036890 | - | |
Cone12ag1329 | 1195 | Gene3D | - | 93 | 127 | - | - | |
Cone12ag1329 | 1195 | Gene3D | - | 274 | 326 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone12ag1329 | Cone-Chr12:10018207 | Cone15ag0619 | Cone-Chr15:3222099 | 0 | dispersed | |
Cone12ag1329 | Cone-Chr12:10018207 | Cone8ag1386 | Cone-Chr8:10973791 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
44530 | None | None | None | None | Cone | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone12ag1329 | K14489 | - | vvi:100263145 | 1528.46 |