Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1329 ATGAGCTGTTCTGCTAGAGTTGGGATTATTCGGAAGCTTTCAAGGCTGTTAGTGAAGATTCATCCTAAGTGGGTTTTACTGAGGATGTCTCTGAATTGCAAGTTCCCTTGTTCTAACGGCAGAATGAAGTCTGGGTTTAAGTTGAAGAAAGCAAGTGAACATTTTCATGGACATAACACTAATTCTGCCGCAAAATGGAGAAAGCTTATTTCTGTATGGCTGTTAGGAGGGGTTATAATTTTAGGCATTTGGTTTTTCTGGAATTTGTATGATAATGGAATCAAAATGAAGCATTCGGGCTCATGTGACGAAAAAGCTCAAATCTTGTTCGAGCATTTCAATGTCAGTAAGAATTTTCTTCATGCTCTATCATCTGACTTTCCTGAATCAGATCAGGTATTTTGTTCAAACAACCAAGGCTTACAAAAGCAAATAAGATTGCCCCCAGAATCTGAAGATTCCAATGAAGATCAGTGCCCCGTTCAAGATGACAATCTCTCCATTTCAAATGTATCATACTGTGTGAAAGAGCATTACAGAAGTTTGTGTAGTTTGGTAATAGGAGGTTTATTGTTCCTTACTGGAGTGATTGTAGGTAGTAACATGTTTGGTTCTTATTTAAGAAAATTGTGGAGGAAAAGCAACGGGCAGAAGGTGGCTGTTATTCAGCCCCCTGTTCATCCTCCAGTTCCGGCACAGAAGAAGCAGCACCACTCACTGGAAAGCGCTGCTAGAGGCAGTGCTGGAAACTGGAGAATGAAACTGCTAGTAGTAGGTGTGACAGCTGGGATTGTTGGCTCCATTTGGATTTTCATGCACATGACTAACGAAAATATTTCAAGAAGAGTTGAAACACTTGCCAGTATGTGTGATGAGCGGGCCCGGATGTTACAAGACCAGTTCAATGTCAGCATGAACCATGTCCATGCTTTGGCGGTTCTTGTCTCTACTTTCCACCATAGAAAGCATCCTTCTGCTATGGATCAGAAAACATTTGGGGAATATACGGAGAGAACAGCATTTGAGAGACCTCTGACTAGTGGTGTGGCTTATGCCTTAAAAGTCAAGCACTCAGAAAGAGAGCAATTTGAGAAGAGGCATGGGTGGACAATAAAGAAAATGGGAACAGAGGACCAAACCTTAGTTCAGGATTGTTTTCTGGAGAATTTGGATCCTGCTCCCATTCAAGATGAATATGCACCGGTTATATTTTCGCAAGAAACTGTTTCGCACATCGTCTCTATTGATATGATGTCAGGAAAGGAAGACCGTGAAAACATTTTACGTGCAAGGGCATCTGGGAAGGGAGTTCTAACATCTCCTTTTATGCTATTGAAATCCAATCACTTGGGCGTTGTGCTAACTTTTGCTGTCTATGACACTAAACTTTCTCCACAAGCCACTCCTGAGCAACGTATTGAAGCTACTGTCGGGTATCTGGGAGCATCATATGATGTCCCCTCATTGGTTGAGAAGCTTCTCCATCAGCTTGCTAGCAAGCAAACAATTTTTGTGAATGTTTACGATACAACTAATGCATCTGATCTCATCAATATGTATGGACCGGATGTGATTGATACTGGTCTAGTGCACGTTAGTAGCCTTGATTTTGGAGATCCACAGAGAAAGCATGAGATGCATTGCAGATTTACGCAGAAATCTCCTATTCCTTGGACAGCGATTAACTCATCACTTGGAGTCCTTGTCATTACTTTGCTTGTGGGCCATATTTTTCATGCAGCAATAATTAGAATTGCGAAAGTGGAGAATGACTATAGGGAGATGATGGAGCTAAAAGTCCGTGCCGAAGCTGCTGATGTGGCAAAATCTCAGTTTCTTGCAACTGTTTCTCACGAGATCAGAACACCAATGAATGGTGTTTTAGGTATGCTGCAAATGCTCATGGACACTGACCTTGATTCAAACCAATTGGATTATGCTCATACAGCTTATGAAAGTGGCAAGGATCTGATTTCCCTTATAAATGAGGTTCTTGATCAGGCTAAGATAGAATCAGGCAGGCTTGAACTTGAAGCCGTACCTTTCAATCTACGTACTATACTCGATAATGTTCTCTCGCTTTTCTCAGGAAAATCTAATGACAAAGGGATCGAGTTGGCTGTTTATGTCTCGAATCTGGTGCCTGAGATTCTCATCGGCGATCCTTCTCGTTTCCAGCAAATAATTACAAACCTTGTAGGAAATTCCATAAAGTTCACTCATGACAGAGGGCATATATTTGTCTCCGTACATCTAGCAGATGAAGTGAGGGGCCCACATGATGAAATGGACAAAGTGCTAAGGCAAGGCTCGGATTTTATTCAAGAAAACACAGCAACAACAACTAATAACTCGTTGAGTGGATCCCCTGTGGTTGACAGATGGAAAAGTTGGGAACAATTTAAAATCTTTAGTAAAAATGAAGCAATGGATGAAGATGAAATCAAATTACTAGTCACGGTAGAGGATACAGGTGTAGGGATTCCTCTATATGCACAAAGCCGGATTTTCACGCCTTTCATGCAAGCTGACAGTTCTACTTCTCGGACCTATGGTGGGACTGGAATAGGACTGAGCATTAGCAAATGTCTGGTAGATCTCATGGGTGGGGAGATAGGATTTGTGAGCGAGCCTGGAACTGGTAGCACTTTCTCATTTACTGGATCTTTCCGGAAAGAAACTTCAAGTTCTCTAGATCTAAACAGGCCACAATATGATCCAATTCTGACAGATTTCAAAGGATTGAGAGCACTGATAATTGATAATGGAAGCATTCGGGCTGAGGTCACCAAATATCATCTACAGAGATTGGGAATCTCAGTAGATATAGTTTCCAGCATAGAATCTTCATCCCCAAGTTCCTTCACTAATGTATCGGTTGTTCTTATCGACAAAGATGTATGGGATGAGGAAAAATGTCTAAAACTTCATTGTTCTCTCAAAGAGCATCCAAATGAGCCAAAACTTTTTCTTTTGGCTACGTCTATTTGCTCACAAGAACGGAATGAACTCAAGTCAGTCGGGTATATAAACAAGATATTGGTAAAGCCACTTCGGTTTAGTGTCTTGATTGGATGCTTCCAGGAAATCCTCGGAAATGGTAAGAAAAGGCAAGACTACAGGAAAAAGCCATCTACTGTTGGGAAACTACTTAGAGGAAAGCGAATATTAGTAGTTGATGACAATGCAGTTAATAGAAGAGTAGCAGAAGGAGCTCTAAAGAAATACGGAGCAATTGTTACTTGTGTGGAAAGTGGGCGAGCTGCTCTTTCCATGCTCAAGCCTCCGCATTCATTTGACGCATGCTTCATGGATCTCCAAATGCCAGAGATGGATGGTTTTGAAGCAACAAGGCAGACTAGATGTTTAGAAGGGCTGGTAAATAAAATAATTGAATCAGGAGAGGCTTCAAATAAGACGTTTGGAAATGTAGCCCATTGGCACACACCTATACTGGCCATGACAGCTGATGTAATACAGGCTACGAATGAAGAGTGCATTAAGTGTGGGATGGATGGTTACGTATCTAAACCTTTTGATGAAGAACAGCTTTATTCAGCAGTCGCACGATTCTTCGAGTCTGATTGA 3588 41.44 MSCSARVGIIRKLSRLLVKIHPKWVLLRMSLNCKFPCSNGRMKSGFKLKKASEHFHGHNTNSAAKWRKLISVWLLGGVIILGIWFFWNLYDNGIKMKHSGSCDEKAQILFEHFNVSKNFLHALSSDFPESDQVFCSNNQGLQKQIRLPPESEDSNEDQCPVQDDNLSISNVSYCVKEHYRSLCSLVIGGLLFLTGVIVGSNMFGSYLRKLWRKSNGQKVAVIQPPVHPPVPAQKKQHHSLESAARGSAGNWRMKLLVVGVTAGIVGSIWIFMHMTNENISRRVETLASMCDERARMLQDQFNVSMNHVHALAVLVSTFHHRKHPSAMDQKTFGEYTERTAFERPLTSGVAYALKVKHSEREQFEKRHGWTIKKMGTEDQTLVQDCFLENLDPAPIQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTSPFMLLKSNHLGVVLTFAVYDTKLSPQATPEQRIEATVGYLGASYDVPSLVEKLLHQLASKQTIFVNVYDTTNASDLINMYGPDVIDTGLVHVSSLDFGDPQRKHEMHCRFTQKSPIPWTAINSSLGVLVITLLVGHIFHAAIIRIAKVENDYREMMELKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTDLDSNQLDYAHTAYESGKDLISLINEVLDQAKIESGRLELEAVPFNLRTILDNVLSLFSGKSNDKGIELAVYVSNLVPEILIGDPSRFQQIITNLVGNSIKFTHDRGHIFVSVHLADEVRGPHDEMDKVLRQGSDFIQENTATTTNNSLSGSPVVDRWKSWEQFKIFSKNEAMDEDEIKLLVTVEDTGVGIPLYAQSRIFTPFMQADSSTSRTYGGTGIGLSISKCLVDLMGGEIGFVSEPGTGSTFSFTGSFRKETSSSLDLNRPQYDPILTDFKGLRALIIDNGSIRAEVTKYHLQRLGISVDIVSSIESSSPSSFTNVSVVLIDKDVWDEEKCLKLHCSLKEHPNEPKLFLLATSICSQERNELKSVGYINKILVKPLRFSVLIGCFQEILGNGKKRQDYRKKPSTVGKLLRGKRILVVDDNAVNRRVAEGALKKYGAIVTCVESGRAALSMLKPPHSFDACFMDLQMPEMDGFEATRQTRCLEGLVNKIIESGEASNKTFGNVAHWHTPILAMTADVIQATNEECIKCGMDGYVSKPFDEEQLYSAVARFFESD 1195
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 10018207 10024863 + Conep12aG0137000.1 Cone12ag1329 450173
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1329 1195 PRINTS Bacterial sensor protein C-terminal signature 876 889 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cone12ag1329 1195 PRINTS Bacterial sensor protein C-terminal signature 835 845 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cone12ag1329 1195 PRINTS Bacterial sensor protein C-terminal signature 852 870 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cone12ag1329 1195 PRINTS Bacterial sensor protein C-terminal signature 817 831 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cone12ag1329 1195 Coils Coil 585 605 - -
Cone12ag1329 1195 SUPERFAMILY CheY-like 908 1043 IPR011006 -
Cone12ag1329 1195 SUPERFAMILY CheY-like 1051 1192 IPR011006 -
Cone12ag1329 1195 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 662 887 IPR036890 -
Cone12ag1329 1195 CDD HATPase_EvgS-ArcB-TorS-like 725 887 - -
Cone12ag1329 1195 CDD REC_hyHK_CKI1_RcsC-like 1056 1188 - -
Cone12ag1329 1195 ProSiteProfiles Histidine kinase domain profile. 615 892 IPR005467 -
Cone12ag1329 1195 SMART HisKA_10 608 673 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone12ag1329 1195 FunFam Histidine kinase 4 580 671 - -
Cone12ag1329 1195 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 815 887 IPR003594 -
Cone12ag1329 1195 CDD HisKA 608 669 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone12ag1329 1195 Gene3D - 580 671 - -
Cone12ag1329 1195 Gene3D - 1049 1195 - -
Cone12ag1329 1195 Pfam CHASE domain 326 520 IPR006189 -
Cone12ag1329 1195 Pfam His Kinase A (phospho-acceptor) domain 608 673 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone12ag1329 1195 SMART REC_2 1054 1188 IPR001789 GO:0000160(InterPro)
Cone12ag1329 1195 SMART CHASE_2 323 522 IPR006189 -
Cone12ag1329 1195 PANTHER TWO-COMPONENT HISTIDINE KINASE 252 1191 IPR050956 -
Cone12ag1329 1195 Pfam Response regulator receiver domain 1056 1138 IPR001789 GO:0000160(InterPro)
Cone12ag1329 1195 Gene3D CHASE domain 327 554 IPR042240 -
Cone12ag1329 1195 ProSiteProfiles CHASE domain profile. 323 547 IPR006189 -
Cone12ag1329 1195 SMART HKATPase_4 720 892 IPR003594 -
Cone12ag1329 1195 FunFam Histidine kinase 4 327 554 - -
Cone12ag1329 1195 ProSiteProfiles Response regulatory domain profile. 1055 1192 IPR001789 GO:0000160(InterPro)
Cone12ag1329 1195 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 593 674 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone12ag1329 1195 Gene3D - 672 894 IPR036890 -
Cone12ag1329 1195 Gene3D - 93 127 - -
Cone12ag1329 1195 Gene3D - 274 326 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1329 Cone-Chr12:10018207 Cone15ag0619 Cone-Chr15:3222099 0 dispersed
Cone12ag1329 Cone-Chr12:10018207 Cone8ag1386 Cone-Chr8:10973791 0 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44530 None None None None Cone TR
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1329 K14489 - vvi:100263145 1528.46