Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1330 ATGGTTTCTTCAGGGGACCATGCACAGCAGGAAATTGCTCCTAGTAAATTAGAGCAGGAACATGGATCTAATAATGGAAACCGGGCCTCTAAGGAGATTCCTAGTAATGAAGTAAATAAGTCACAATCAGATCAAAAAGGGAAGTCTCTGGCCATGGTGGTGATACCTGAGAAAGCCGTGCAAGAGCCTAATGCTCTGCAATCGGGCCAGAAAGGAAACACTCCGTCTAAAATACGGGAGAAAGTATCAGAGGATGGATATAATTGGCGAAAATATGGTCAAAAACTTGTCAAGGGGAATGAGTTTGTTAGGAGTTATTATAAATGCACTCATCCAAATTGTCAGGTGAAAAAGCAATTGGAATGCTCACATGAAGGGAAAATAACAGATACTATTTACTTTGGTCATCACGATCATCCTAAACAACAACTAGTTAACATCCCAGAAGCTGTTGGATTTGTTGTGTCCATAGTTGATGAAAAATCAGATGAGCCTTCTTCAACTAACGCAGAAGAGAAATCATCCATTGCAAATGACCAGACACCTCAAAAAACCGAGCAAGTAGATGCCCATCCTCCACCAGCCACTGATGATGTCAAAGCTGAACCTTTACAGTTGGCTAGGATTAGGGATGATATTGACCATTGTGATGCTTCAGACTCGAAACGACATAAGAAGGGATATCGGAATTCTGAAACTCAAGCAGATAAGCCGAATGTTGAACCACATGTTGTTCGGACTCTCAGTGAGGTTGATTTTGTGAATGATGGGTACCGCTGGCGGAAATATGGGCAGAAATTGGTGAAGGGAAATCTAAATCCTAGAAGTTACTATAGATGCTCGACTCCTGGATGTCCTGCTAAGAAGCATGTGGAGAGATCGTCGAATGATCCAAAGCTTGTTGTAACCATGTACGACGGACAACACGACCATGATATGCCTCCAGCCAGGACTGTCATGCATAACACAACCGGGCCAACCAGCACGACATCCCATAGTAGTGAGGCCCAAACAAAATCGGAGGATCAAAAGGATCAAACTATTGTTCCTACTTCAGTTCCCATAAGTAATTTGGGTGCTGTAAATGGAAAAAGTAACGAGGTGAAGACTGAGATAAGAGCCAAATCGGGAGAAAGCGACAGCAATTGTGGTGCTATAGTAGTTCATGATAACGTGCAGCAGATAAAGAGTGGAGAGCAACCTGTGCAAAGCTAG 1215 42.96 MVSSGDHAQQEIAPSKLEQEHGSNNGNRASKEIPSNEVNKSQSDQKGKSLAMVVIPEKAVQEPNALQSGQKGNTPSKIREKVSEDGYNWRKYGQKLVKGNEFVRSYYKCTHPNCQVKKQLECSHEGKITDTIYFGHHDHPKQQLVNIPEAVGFVVSIVDEKSDEPSSTNAEEKSSIANDQTPQKTEQVDAHPPPATDDVKAEPLQLARIRDDIDHCDASDSKRHKKGYRNSETQADKPNVEPHVVRTLSEVDFVNDGYRWRKYGQKLVKGNLNPRSYYRCSTPGCPAKKHVERSSNDPKLVVTMYDGQHDHDMPPARTVMHNTTGPTSTTSHSSEAQTKSEDQKDQTIVPTSVPISNLGAVNGKSNEVKTEIRAKSGESDSNCGAIVVHDNVQQIKSGEQPVQS 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10026135 10029253 - Conep12aG0137100.1 Cone12ag1330 450174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1330 404 SMART WRKY_cls 254 313 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone12ag1330 404 SMART WRKY_cls 83 141 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone12ag1330 404 Pfam WRKY DNA -binding domain 84 140 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone12ag1330 404 Pfam WRKY DNA -binding domain 255 312 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone12ag1330 404 MobiDBLite consensus disorder prediction 318 367 - -
Cone12ag1330 404 FunFam WRKY transcription factor 241 315 - -
Cone12ag1330 404 SUPERFAMILY WRKY DNA-binding domain 246 314 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone12ag1330 404 MobiDBLite consensus disorder prediction 1 48 - -
Cone12ag1330 404 ProSiteProfiles WRKY domain profile. 249 314 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone12ag1330 404 MobiDBLite consensus disorder prediction 320 336 - -
Cone12ag1330 404 MobiDBLite consensus disorder prediction 203 232 - -
Cone12ag1330 404 MobiDBLite consensus disorder prediction 1 79 - -
Cone12ag1330 404 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 14 140 IPR044810 GO:0003700(InterPro)
Cone12ag1330 404 MobiDBLite consensus disorder prediction 343 364 - -
Cone12ag1330 404 MobiDBLite consensus disorder prediction 162 242 - -
Cone12ag1330 404 MobiDBLite consensus disorder prediction 169 187 - -
Cone12ag1330 404 Gene3D WRKY domain 239 315 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone12ag1330 404 Gene3D WRKY domain 71 141 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone12ag1330 404 ProSiteProfiles WRKY domain profile. 78 142 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone12ag1330 404 SUPERFAMILY WRKY DNA-binding domain 80 141 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone12ag1330 404 FunFam WRKY transcription factor 73 143 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1330 Cone-Chr12:10026135 Cone6ag0027 Cone-Chr6:172101 4.01E-74 dispersed
Cone12ag1330 Cone-Chr12:10026135 Cone14ag1206 Cone-Chr14:9812542 1.70E-63 wgd
Cone12ag1330 Cone-Chr12:10026135 Cone15ag1223 Cone-Chr15:9724224 2.80E-12 wgd
Cone12ag1330 Cone-Chr12:10026135 Cone8ag1387 Cone-Chr8:10979428 8.56E-239 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44531 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1330 K18834 - vvi:100256306 365.54