Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone12ag1330 | ATGGTTTCTTCAGGGGACCATGCACAGCAGGAAATTGCTCCTAGTAAATTAGAGCAGGAACATGGATCTAATAATGGAAACCGGGCCTCTAAGGAGATTCCTAGTAATGAAGTAAATAAGTCACAATCAGATCAAAAAGGGAAGTCTCTGGCCATGGTGGTGATACCTGAGAAAGCCGTGCAAGAGCCTAATGCTCTGCAATCGGGCCAGAAAGGAAACACTCCGTCTAAAATACGGGAGAAAGTATCAGAGGATGGATATAATTGGCGAAAATATGGTCAAAAACTTGTCAAGGGGAATGAGTTTGTTAGGAGTTATTATAAATGCACTCATCCAAATTGTCAGGTGAAAAAGCAATTGGAATGCTCACATGAAGGGAAAATAACAGATACTATTTACTTTGGTCATCACGATCATCCTAAACAACAACTAGTTAACATCCCAGAAGCTGTTGGATTTGTTGTGTCCATAGTTGATGAAAAATCAGATGAGCCTTCTTCAACTAACGCAGAAGAGAAATCATCCATTGCAAATGACCAGACACCTCAAAAAACCGAGCAAGTAGATGCCCATCCTCCACCAGCCACTGATGATGTCAAAGCTGAACCTTTACAGTTGGCTAGGATTAGGGATGATATTGACCATTGTGATGCTTCAGACTCGAAACGACATAAGAAGGGATATCGGAATTCTGAAACTCAAGCAGATAAGCCGAATGTTGAACCACATGTTGTTCGGACTCTCAGTGAGGTTGATTTTGTGAATGATGGGTACCGCTGGCGGAAATATGGGCAGAAATTGGTGAAGGGAAATCTAAATCCTAGAAGTTACTATAGATGCTCGACTCCTGGATGTCCTGCTAAGAAGCATGTGGAGAGATCGTCGAATGATCCAAAGCTTGTTGTAACCATGTACGACGGACAACACGACCATGATATGCCTCCAGCCAGGACTGTCATGCATAACACAACCGGGCCAACCAGCACGACATCCCATAGTAGTGAGGCCCAAACAAAATCGGAGGATCAAAAGGATCAAACTATTGTTCCTACTTCAGTTCCCATAAGTAATTTGGGTGCTGTAAATGGAAAAAGTAACGAGGTGAAGACTGAGATAAGAGCCAAATCGGGAGAAAGCGACAGCAATTGTGGTGCTATAGTAGTTCATGATAACGTGCAGCAGATAAAGAGTGGAGAGCAACCTGTGCAAAGCTAG | 1215 | 42.96 | MVSSGDHAQQEIAPSKLEQEHGSNNGNRASKEIPSNEVNKSQSDQKGKSLAMVVIPEKAVQEPNALQSGQKGNTPSKIREKVSEDGYNWRKYGQKLVKGNEFVRSYYKCTHPNCQVKKQLECSHEGKITDTIYFGHHDHPKQQLVNIPEAVGFVVSIVDEKSDEPSSTNAEEKSSIANDQTPQKTEQVDAHPPPATDDVKAEPLQLARIRDDIDHCDASDSKRHKKGYRNSETQADKPNVEPHVVRTLSEVDFVNDGYRWRKYGQKLVKGNLNPRSYYRCSTPGCPAKKHVERSSNDPKLVVTMYDGQHDHDMPPARTVMHNTTGPTSTTSHSSEAQTKSEDQKDQTIVPTSVPISNLGAVNGKSNEVKTEIRAKSGESDSNCGAIVVHDNVQQIKSGEQPVQS | 404 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 10026135 | 10029253 | - | Conep12aG0137100.1 | Cone12ag1330 | 450174 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone12ag1330 | 404 | SMART | WRKY_cls | 254 | 313 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone12ag1330 | 404 | SMART | WRKY_cls | 83 | 141 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone12ag1330 | 404 | Pfam | WRKY DNA -binding domain | 84 | 140 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone12ag1330 | 404 | Pfam | WRKY DNA -binding domain | 255 | 312 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone12ag1330 | 404 | MobiDBLite | consensus disorder prediction | 318 | 367 | - | - | |
Cone12ag1330 | 404 | FunFam | WRKY transcription factor | 241 | 315 | - | - | |
Cone12ag1330 | 404 | SUPERFAMILY | WRKY DNA-binding domain | 246 | 314 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone12ag1330 | 404 | MobiDBLite | consensus disorder prediction | 1 | 48 | - | - | |
Cone12ag1330 | 404 | ProSiteProfiles | WRKY domain profile. | 249 | 314 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone12ag1330 | 404 | MobiDBLite | consensus disorder prediction | 320 | 336 | - | - | |
Cone12ag1330 | 404 | MobiDBLite | consensus disorder prediction | 203 | 232 | - | - | |
Cone12ag1330 | 404 | MobiDBLite | consensus disorder prediction | 1 | 79 | - | - | |
Cone12ag1330 | 404 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 14 | 140 | IPR044810 | GO:0003700(InterPro) | |
Cone12ag1330 | 404 | MobiDBLite | consensus disorder prediction | 343 | 364 | - | - | |
Cone12ag1330 | 404 | MobiDBLite | consensus disorder prediction | 162 | 242 | - | - | |
Cone12ag1330 | 404 | MobiDBLite | consensus disorder prediction | 169 | 187 | - | - | |
Cone12ag1330 | 404 | Gene3D | WRKY domain | 239 | 315 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone12ag1330 | 404 | Gene3D | WRKY domain | 71 | 141 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone12ag1330 | 404 | ProSiteProfiles | WRKY domain profile. | 78 | 142 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone12ag1330 | 404 | SUPERFAMILY | WRKY DNA-binding domain | 80 | 141 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone12ag1330 | 404 | FunFam | WRKY transcription factor | 73 | 143 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone12ag1330 | Cone-Chr12:10026135 | Cone6ag0027 | Cone-Chr6:172101 | 4.01E-74 | dispersed | |
Cone12ag1330 | Cone-Chr12:10026135 | Cone14ag1206 | Cone-Chr14:9812542 | 1.70E-63 | wgd | |
Cone12ag1330 | Cone-Chr12:10026135 | Cone15ag1223 | Cone-Chr15:9724224 | 2.80E-12 | wgd | |
Cone12ag1330 | Cone-Chr12:10026135 | Cone8ag1387 | Cone-Chr8:10979428 | 8.56E-239 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
44531 | None | None | None | None | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone12ag1330 | K18834 | - | vvi:100256306 | 365.54 |