Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1360 ATGGCTCAATTGCCTCCTAAAATCCCAAACACGACGCCCAATAATTGGCCGGATTTTTCTCACAAGAAATTGCAGTTTCCAGCCACCACAGCCGCTGCTGCCTCCACCCCATCTTGGGTGGACGATTTTCTCAACTTCTCCTCTACGAAACGAGGGTCACACCGCCGCTCCGCCAGCGATTCCATGACCTTCATCGACTCACCTACCAATAACGGCCCGTCCATTAACAATCATGAATTCGACCGGTTTGATAACGAGCAGTTCATGTCCATGTTCGAGGAAGATCATCATGATTATCACCACCACCACCACCACCATCATCATCATCATCATCATAATATCTTGGCCAATGCAGGAGGCACAGCCGGCCCCAGCGCATCGTCTTCAAACCCGTCTACACCTTCCGATCATAACAGCATCAATGAAGATGATCAGAATGATGCCTCCGGCCAGGTGCCCAATGATCATCAGATGCACCATAAGATATCAGTGAACGAAACTCATGATCATGAGGTAGAAAGCCAATGCAAATCCGAAACGCAGACATTGAACAATTCAACCATGTCAAACCCGTCTTCCGATCGGATAATCGACCCGAAACGGGTCAAGAGAATTCTGGCGAATCGACAGTCGGCACAGAGATCGCGGGTGAGGAAGCTGCAGTATATATCAGATCTCGAACGCAGCGTCACATCATTACAAGCGGAAGTGTCGGTTTTGTCGCCGAGAGTTGCGTTTTTAGATCATCAGCGTTTGCTTCTGAATGTCGACAACAGTGCTCTGAAGCAACGAATTGCCGCCCTTGCTCAAGATAAGATCTTCAAAGACGCTCATCAAGAAGCATTGAAGAGAGAGATAGAAAGATTAAGGCAAGTCTATCACCAACAGAATCTGAAGAAGACGGAGAACGCAGCGGCTGCACCGCCACCGAGCCCTTCCGATTCTAAGTCGACTCCGGCGGAGCAAAAAGATCATCAGCTTCTCAGTGTCTGA 993 48.94 MAQLPPKIPNTTPNNWPDFSHKKLQFPATTAAAASTPSWVDDFLNFSSTKRGSHRRSASDSMTFIDSPTNNGPSINNHEFDRFDNEQFMSMFEEDHHDYHHHHHHHHHHHHHNILANAGGTAGPSASSSNPSTPSDHNSINEDDQNDASGQVPNDHQMHHKISVNETHDHEVESQCKSETQTLNNSTMSNPSSDRIIDPKRVKRILANRQSAQRSRVRKLQYISDLERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIERLRQVYHQQNLKKTENAAAAPPPSPSDSKSTPAEQKDHQLLSV 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10123603 10124901 + Conep12aG0140200.1 Cone12ag1360 450204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1360 330 Coils Coil 279 299 - -
Cone12ag1360 330 MobiDBLite consensus disorder prediction 177 194 - -
Cone12ag1360 330 SUPERFAMILY Leucine zipper domain 200 254 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag1360 330 Gene3D - 199 270 - -
Cone12ag1360 330 MobiDBLite consensus disorder prediction 99 155 - -
Cone12ag1360 330 SMART brlzneu 196 260 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag1360 330 FunFam Basic leucine zipper 61 199 272 - -
Cone12ag1360 330 MobiDBLite consensus disorder prediction 167 199 - -
Cone12ag1360 330 Pfam bZIP transcription factor 200 244 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag1360 330 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 198 250 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag1360 330 PANTHER BASIC LEUCINE ZIPPER 34 1 320 IPR052483 GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0045893(PANTHER)
Cone12ag1360 330 MobiDBLite consensus disorder prediction 120 155 - -
Cone12ag1360 330 CDD bZIP_plant_RF2 201 251 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag1360 330 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 203 218 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag1360 330 MobiDBLite consensus disorder prediction 49 80 - -
Cone12ag1360 330 MobiDBLite consensus disorder prediction 293 330 - -
Cone12ag1360 330 MobiDBLite consensus disorder prediction 49 78 - -
Cone12ag1360 330 MobiDBLite consensus disorder prediction 100 114 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1360 Cone-Chr12:10123603 Cone15ag1029 Cone-Chr15:8550755 8.46E-52 dispersed
Cone12ag1360 Cone-Chr12:10123603 Cone8ag1416 Cone-Chr8:11073062 2.93E-142 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44535 PF04674 Phi_1 8.90E-120 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1360 - - - 0.0