Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone12ag1360 | ATGGCTCAATTGCCTCCTAAAATCCCAAACACGACGCCCAATAATTGGCCGGATTTTTCTCACAAGAAATTGCAGTTTCCAGCCACCACAGCCGCTGCTGCCTCCACCCCATCTTGGGTGGACGATTTTCTCAACTTCTCCTCTACGAAACGAGGGTCACACCGCCGCTCCGCCAGCGATTCCATGACCTTCATCGACTCACCTACCAATAACGGCCCGTCCATTAACAATCATGAATTCGACCGGTTTGATAACGAGCAGTTCATGTCCATGTTCGAGGAAGATCATCATGATTATCACCACCACCACCACCACCATCATCATCATCATCATCATAATATCTTGGCCAATGCAGGAGGCACAGCCGGCCCCAGCGCATCGTCTTCAAACCCGTCTACACCTTCCGATCATAACAGCATCAATGAAGATGATCAGAATGATGCCTCCGGCCAGGTGCCCAATGATCATCAGATGCACCATAAGATATCAGTGAACGAAACTCATGATCATGAGGTAGAAAGCCAATGCAAATCCGAAACGCAGACATTGAACAATTCAACCATGTCAAACCCGTCTTCCGATCGGATAATCGACCCGAAACGGGTCAAGAGAATTCTGGCGAATCGACAGTCGGCACAGAGATCGCGGGTGAGGAAGCTGCAGTATATATCAGATCTCGAACGCAGCGTCACATCATTACAAGCGGAAGTGTCGGTTTTGTCGCCGAGAGTTGCGTTTTTAGATCATCAGCGTTTGCTTCTGAATGTCGACAACAGTGCTCTGAAGCAACGAATTGCCGCCCTTGCTCAAGATAAGATCTTCAAAGACGCTCATCAAGAAGCATTGAAGAGAGAGATAGAAAGATTAAGGCAAGTCTATCACCAACAGAATCTGAAGAAGACGGAGAACGCAGCGGCTGCACCGCCACCGAGCCCTTCCGATTCTAAGTCGACTCCGGCGGAGCAAAAAGATCATCAGCTTCTCAGTGTCTGA | 993 | 48.94 | MAQLPPKIPNTTPNNWPDFSHKKLQFPATTAAAASTPSWVDDFLNFSSTKRGSHRRSASDSMTFIDSPTNNGPSINNHEFDRFDNEQFMSMFEEDHHDYHHHHHHHHHHHHHNILANAGGTAGPSASSSNPSTPSDHNSINEDDQNDASGQVPNDHQMHHKISVNETHDHEVESQCKSETQTLNNSTMSNPSSDRIIDPKRVKRILANRQSAQRSRVRKLQYISDLERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIERLRQVYHQQNLKKTENAAAAPPPSPSDSKSTPAEQKDHQLLSV | 330 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 10123603 | 10124901 | + | Conep12aG0140200.1 | Cone12ag1360 | 450204 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone12ag1360 | 330 | Coils | Coil | 279 | 299 | - | - | |
Cone12ag1360 | 330 | MobiDBLite | consensus disorder prediction | 177 | 194 | - | - | |
Cone12ag1360 | 330 | SUPERFAMILY | Leucine zipper domain | 200 | 254 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone12ag1360 | 330 | Gene3D | - | 199 | 270 | - | - | |
Cone12ag1360 | 330 | MobiDBLite | consensus disorder prediction | 99 | 155 | - | - | |
Cone12ag1360 | 330 | SMART | brlzneu | 196 | 260 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone12ag1360 | 330 | FunFam | Basic leucine zipper 61 | 199 | 272 | - | - | |
Cone12ag1360 | 330 | MobiDBLite | consensus disorder prediction | 167 | 199 | - | - | |
Cone12ag1360 | 330 | Pfam | bZIP transcription factor | 200 | 244 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone12ag1360 | 330 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 198 | 250 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone12ag1360 | 330 | PANTHER | BASIC LEUCINE ZIPPER 34 | 1 | 320 | IPR052483 | GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0045893(PANTHER) | |
Cone12ag1360 | 330 | MobiDBLite | consensus disorder prediction | 120 | 155 | - | - | |
Cone12ag1360 | 330 | CDD | bZIP_plant_RF2 | 201 | 251 | IPR044759 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone12ag1360 | 330 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 203 | 218 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone12ag1360 | 330 | MobiDBLite | consensus disorder prediction | 49 | 80 | - | - | |
Cone12ag1360 | 330 | MobiDBLite | consensus disorder prediction | 293 | 330 | - | - | |
Cone12ag1360 | 330 | MobiDBLite | consensus disorder prediction | 49 | 78 | - | - | |
Cone12ag1360 | 330 | MobiDBLite | consensus disorder prediction | 100 | 114 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone12ag1360 | Cone-Chr12:10123603 | Cone15ag1029 | Cone-Chr15:8550755 | 8.46E-52 | dispersed | |
Cone12ag1360 | Cone-Chr12:10123603 | Cone8ag1416 | Cone-Chr8:11073062 | 2.93E-142 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
44535 | PF04674 | Phi_1 | 8.90E-120 | No_clan | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone12ag1360 | - | - | - | 0.0 |