Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1367 ATGGCCAAAGGAGGTGGACTTCCCGTTGATCTAGATCCATCTGCCGCCACCTTCTTTCTCCACAATCCTGTAGTCCTCAACTCTTTCCCAGAAAATCTAATCCACTACCCTAACCATCATATTATCAACACTTTTCCTTCTTCTTCTACTGCTTCTACTACTACTACTCATATCCCGGTTAATAATCTCTTCATGATGGAGTCCAAAGTTTCCACCGCCACCGCCACCACCTCTAACTCGGCCTCAGTATCTCCTCCTCCTCCTCCGCCACCTCCTACTCTTCTTCCTCCTTCTAAGACTTTCCAATTAATCCCGGTCAACCTTATAAACTCTTCCCATGACGATGATTTCGATGACCAGCTTCAACCTTCACCGTCCGATGATGGTCATCATAGACGGACTACCATAATTGAGATGGACTTCTTCGCTCATGATAAGAAACCAGCCTCCTCTTCCTTCCCTAACCTTGATATCGATCGGAAAGACTCCGACAACCGACAAGTCAACGTAAACACTGGTTTGAATCTTCTTACGACAAATACATGTAGCGATCAGTCGATGGTTGACGACAGGATATGGCCGAACATAGTTGCAGATGATAAGAGAGCTAGAGACAATGAGCTGACAGTTCTTAAAGCTGAGCTTGCGAGAATGAACACGGAGAATGAAGAATTAAAAGGAGTACTGAATCAGGTTACTAGCAATTACCAAGCCTTGCATCTACAGGTTGCGAATCTTATGCAAAAACAGAAGGCTGAAATTCATCATGATCCAAGTATGAGCTATGTTCTTGATTCAAAAGGTGTTAATTCTGACGAAGTATTAGCAGTGGAGGAAAAGAACGGACGATTGGTGCCAAGACAGTTTCGGGAACTTTCTAGTGATATATATGCTGATACTAATACAAATTTTTGTGAGAATTCGAACTGTTCATCGGAAGGGAGGAGTCGCGAGAGATCGCGGTCGGATCCAGGAAATAATGTTAATAATGGAGATGAGGTAGGTTGCAAAGGGCAGCTTGTTTTTAATGATCAAAATAAGAAGGAATTAGTAATTGGTCGAGAGCAAGCATCTCAAAGATGGGTTGCTAATAAAGTTCCAAGCTTCAATTCTACTAAAGATCAAATGGACCAAACTGAGGCCATCATGCGTAAGGCTCGTGTTTCTGTTCGAGCTCGATCCGAGGCACAAAATATCCCTGATGGGTGTCAATGGAGAAAGTATGGCCAGAAAATGGCCAAAGGAAACCCATGCCCTCGAGCTTATTATCGATGCACGATGGCTGCCGGATGTCCAGTTCGTAAACAGGTACAAAGATGTGCAGAAGATAGAACAATTTTGATAACAACGTACGAAGGTAATCACAACCACCCACTGCCTCCGGCCGCAATGACAATGGCATCGACAACCTCATCAGCCGCCAGAATGCTCTTGTCAGGATCAATGTCGAGCGCAGACAGGCTAAACAACGCGTCGAACAACAGTTTCATGACAAGAAGCACTCTCCTGCCATGCTCTTCCACCATGGCAACCTTCTCAGCCTCAGCTCCATTTCCCACTGTTACATTGGACCTCACTCAGAACCCTAATAACCCTTTACAAGCACTCCAAAAGCACCTACTTCAACAAAACCAATTCCAATCACTCCCATTCCTGAACCCGCATCCAAACACTCCTCCAAACTTCGCATCTCCAAGCAACAGCTTGTTCCCTCAAATTTTTGGATCAAAAGTGACTGGTAGTGACACTTTTAATGCTGCCAGTGCGGCCATTGCTGCAGATCCAAACTTCACCGCCGCTCTTGCAGCAGCCATTTCCTCTATTATTGGTAGTGGTTCTCAATCTCATCCAATTATTAACAGATTTACTAATAACAATAATGATGGTAACGTTAAGAGTAATGATAATAATGGAAATCTTGCCGCAAGTGAGAGTAATGATAATAATGGAAATCTTGCCGCAAGTGAGAGTAATGCTAATGTTACTACAAGCAACAGAAACAACAGTAATAGCGATAATAAAGTCAGCAACACAACTTTTTCAGGGAATTAG 2052 43.62 MAKGGGLPVDLDPSAATFFLHNPVVLNSFPENLIHYPNHHIINTFPSSSTASTTTTHIPVNNLFMMESKVSTATATTSNSASVSPPPPPPPPTLLPPSKTFQLIPVNLINSSHDDDFDDQLQPSPSDDGHHRRTTIIEMDFFAHDKKPASSSFPNLDIDRKDSDNRQVNVNTGLNLLTTNTCSDQSMVDDRIWPNIVADDKRARDNELTVLKAELARMNTENEELKGVLNQVTSNYQALHLQVANLMQKQKAEIHHDPSMSYVLDSKGVNSDEVLAVEEKNGRLVPRQFRELSSDIYADTNTNFCENSNCSSEGRSRERSRSDPGNNVNNGDEVGCKGQLVFNDQNKKELVIGREQASQRWVANKVPSFNSTKDQMDQTEAIMRKARVSVRARSEAQNIPDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMTMASTTSSAARMLLSGSMSSADRLNNASNNSFMTRSTLLPCSSTMATFSASAPFPTVTLDLTQNPNNPLQALQKHLLQQNQFQSLPFLNPHPNTPPNFASPSNSLFPQIFGSKVTGSDTFNAASAAIAADPNFTAALAAAISSIIGSGSQSHPIINRFTNNNNDGNVKSNDNNGNLAASESNDNNGNLAASESNANVTTSNRNNSNSDNKVSNTTFSGN 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10158602 10161390 + Conep12aG0140900.1 Cone12ag1367 450211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1367 683 MobiDBLite consensus disorder prediction 112 131 - -
Cone12ag1367 683 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 186 614 IPR044810 GO:0003700(InterPro)
Cone12ag1367 683 MobiDBLite consensus disorder prediction 82 98 - -
Cone12ag1367 683 Coils Coil 208 249 - -
Cone12ag1367 683 Pfam WRKY DNA -binding domain 401 458 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone12ag1367 683 MobiDBLite consensus disorder prediction 308 335 - -
Cone12ag1367 683 SMART WRKY_cls 399 459 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone12ag1367 683 FunFam probable WRKY transcription factor 31 384 461 - -
Cone12ag1367 683 SUPERFAMILY WRKY DNA-binding domain 393 460 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone12ag1367 683 Gene3D WRKY domain 384 461 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone12ag1367 683 ProSiteProfiles WRKY domain profile. 394 460 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone12ag1367 683 MobiDBLite consensus disorder prediction 622 683 - -
Cone12ag1367 683 MobiDBLite consensus disorder prediction 71 99 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1367 Cone-Chr12:10158602 Cone1ag0014 Cone-Chr1:120101 1.79E-100 dispersed
Cone12ag1367 Cone-Chr12:10158602 Cone3ag1328 Cone-Chr3:32232091 1.41E-112 wgd
Cone12ag1367 Cone-Chr12:10158602 Cone8ag1424 Cone-Chr8:11102295 3.18e-310 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44537 PF00926 DHBP_synthase 2.30E-82 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1367 - - - 0.0