Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1369 ATGGTATGGACCAGAGGGCAAGTCATTGGCCGCGGCTCATCAGCCACCGTCTCCATCGCCGCCAACAATCTTTCCGGTGAAGTTTTTGCCGTCAAGTCCACGGAGCTCTCCCACTCCCACTTCTTACAGAGAGAGCAAAAAATCATCTCATCCTTAAATTCCCCTCACATAGTTAGCTACAAGGGGTGTGACGTATCCAAAGAAAACAACAAGCTCATCTACAATCTATTCATGGAGTATCTTCCCGGCGGCATGCTTTCCGATCAAATCCGCAGGAAAAATCTCCGGCTCGACGAATCACTGATCGGAATCTATACACAGCAAATCGTACAAGGGCTCGAGTACTTACACGCCCAAGGAATTGTACATTGTGACATTAAGGGTAGCAATATTTTGATCGGACAATACGGGGTGAAAATTGCCGATTTCGGATGCTCCAAACTTTTACGGGTCGACCCGGAAGCAGAAATTGGCGGCGGAACCCCTATGTTTATGGCTCCTGAGGTAGCACGTGGGGAAGAACAGGGGTGCCCATGTGACATATGGGCTCTCGGGTGTACAATTATTGAAATGGCCAGTGGTAAATTGCCATGGACTGATAATTCAGGTGATCCAGTTTCGGTTCTTTACCGGATTGGATATTCCGGGGAATCTCCGGAGATTCCGAGATGTCTTTCCGAGCAAGCGAAGAATTTTGTGGAGAAGTGCTTGGTGAGGGATCAGAGAGAGAGGTGGACGGCTAGTCAACTTTTGAAGCATCCATTTCTTGAAGAGATCAATAACAACAATAACACGAATGGAAGGAAGATAATTCAAGAATCTTATTCAACTTCGTCTCCTACAAGTATTCTCGACCCTGACATTTGGAACGTGATGGAACAAGAGTTGGGTAGTAATCCAGCGATCAACGCAGGTAGTTCCAGATGTCTTGGCGCCGATAGGATCACACGGTTGTCAGTGTTTGAAGTGGGGCCCAGTTGGAGAGAAGAACATGATGATGATGATGCTGATGATGATGATGATGATGATGATGATGATGATGGGAATTGGATTACGATCAGAAGGAGATCAGTCGAAGATGAAATGAGAAGTGGGTCAACGCCAGCTTGGAATATTAATGAGTTGGAGGAGATGGAAAGGAGTAGTGGAAATAGTAAACTGGAAAAGTCGTTGGAATTATTACATAGAATTAGTTGGAAAAACAGTTTTGTAATTAGTGACAGCATTTGTAAGAGACCAGGCAAAGATAAGTCGTTAAATCGTGTAGTAACAAGTTTTTTAATCACTTAA 1290 44.73 MVWTRGQVIGRGSSATVSIAANNLSGEVFAVKSTELSHSHFLQREQKIISSLNSPHIVSYKGCDVSKENNKLIYNLFMEYLPGGMLSDQIRRKNLRLDESLIGIYTQQIVQGLEYLHAQGIVHCDIKGSNILIGQYGVKIADFGCSKLLRVDPEAEIGGGTPMFMAPEVARGEEQGCPCDIWALGCTIIEMASGKLPWTDNSGDPVSVLYRIGYSGESPEIPRCLSEQAKNFVEKCLVRDQRERWTASQLLKHPFLEEINNNNNTNGRKIIQESYSTSSPTSILDPDIWNVMEQELGSNPAINAGSSRCLGADRITRLSVFEVGPSWREEHDDDDADDDDDDDDDDDGNWITIRRRSVEDEMRSGSTPAWNINELEEMERSSGNSKLEKSLELLHRISWKNSFVISDSICKRPGKDKSLNRVVTSFLIT 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10167618 10168945 + Conep12aG0141100.1 Cone12ag1369 450213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1369 429 SUPERFAMILY Protein kinase-like (PK-like) 3 287 IPR011009 -
Cone12ag1369 429 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone12ag1369 429 Gene3D Transferase(Phosphotransferase) domain 1 88 294 - -
Cone12ag1369 429 MobiDBLite consensus disorder prediction 331 347 - -
Cone12ag1369 429 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524(InterPro)
Cone12ag1369 429 MobiDBLite consensus disorder prediction 326 349 - -
Cone12ag1369 429 CDD STKc_MAPKKK 3 256 - -
Cone12ag1369 429 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Cone12ag1369 429 Pfam Protein kinase domain 4 256 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag1369 429 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 257 IPR052751 GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cone12ag1369 429 SMART serkin_6 3 256 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag1369 429 ProSiteProfiles Protein kinase domain profile. 3 256 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0863 Cone-Chr10:4455192 Cone12ag1369 Cone-Chr12:10167618 8.09E-64 dispersed
Cone12ag1369 Cone-Chr12:10167618 Cone6ag1102 Cone-Chr6:6833662 3.63E-88 dispersed
Cone12ag1369 Cone-Chr12:10167618 Cone14ag1159 Cone-Chr14:9566867 3.36E-87 wgd
Cone12ag1369 Cone-Chr12:10167618 Cone15ag1175 Cone-Chr15:9476846 1.22E-89 wgd
Cone12ag1369 Cone-Chr12:10167618 Cone8ag1426 Cone-Chr8:11113054 3.81E-258 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81984 PF13041 PPR_2 2.60E-08 CL0020 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1369 K20716 - cit:102628791 375.17