Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone12ag1384 | ATGCCAGCTGGGATTATGAACGCCGCCAGAAACACGCCGTCGATGATCGGAAGGAACGGAAATGTTAACAGCTTTGGATCCTCATCGTCTCTCAACCTTAGTCAGCCTAACAACATGATGGAATCCCAAGTACTCCACCCACTAAACATGGCCCAAAACACTTCCGATAGCAATCTTGCCGCCAGAATTCGGAATGATGATTTTGACACCGCCACAAAATCCGGCAGTGAAAACCAGGATCTAGCCTCAGGTGATGACCAAGAACCTCGCGCTAAAAAGAAGCGCTACCACCGCCACACCCAACATCAGATCCAAGAAATGGAAGCTTTCTTTAAGGAGTGTCCACACCCAGATGACAAACAAAGAAAGGAACTGAGCAGGGAACTAGGGCTAGAGCCATTGCAAGTCAAATTCTGGTTCCAAAACAAGCGCACTCAAATGAAGACCCAGCATGAGCGCCATGAAAACACACAACTTAGAACAGAAAACGAAAAGCTTAGGTCTGACAACATAAGATACAGAGAAGCCCTTAGCAATGCGTCATGTCCCAATTGTGGTGGGCCAACCGCCATTGGAGAGATGTCTTTCGATGAACATCATCTCAGACTCGAAAACGCACGATTACGTGAAGAGATTGATCGAATTTCAGCTATAGCTGCGAAGTATGTTGGAAAGCCGGTGCTGAATTACCCTCTTATTTCTCCAGAACCCTCTAATTCTCGTCCATTAGAACTTGGGGTAGGGAATTATGGAGGGCAATCAGGGAATATTGGAGGAGATGTTTTTGTGGCAGAGGATCTTCTTGGGTCGATTAGCGCACCGACCGAGGCTGATAAGCCAATGATTATCGAGCTTGCAGTTGCAGCAATGGAGGAATTGATCAGAATGGCTCAAATGGGGGACCCCTTGTGGGTCAGATCAGGGATTGATGGGACCACATGTGTACTTAATGAAGATGAATACCTTAGAACATTTCCAAGAGGCATCGGACCAAAACCTTCTGGATTTATATGTGAAGCCTCTAGAGAAACAGCCGTTGTTATTATGAACCATATTAACCTTGTTGAGATACTCATGGATGTGAATCAATGGTCGACTGTGTTTTCTGGAATTGTCTCAAGAGCCTTGACACTAGAGGTGTTATCGACCGGAGTGGCCGGAAATTACAATGGGGCATTGCAAGTGATGACGTCCGAATTTCAAGTCCCCTCACCGCTTGTTCCAACCCGTGAGAGTTATTATGTAAGGTATTGTAAACAGCATGCTGATGGGACATGGGCTGTGGTCGATGTTTCTTTGGACAACCTTCGACCTAGTCCCGCAGTCCGGTGTAGAAGAAGACCCTCTGGCTGTTTGATTCAAGAAATGCCTAACGGATATTCAAAGGTTACATGGGTTGAGCATGTAGAGGTAGATGATAGAGGGGTCCACAATCTGTATAGGCAGCTAGTTAGCTCCGGTCACGCATTCGGGGCGAAGCATTGGGTTTCCACCTTAGACCGTCAATGTGAACGTCTTGCCAGTGCAATGGCCACAAACATCCCGACCGGTGATGTTGGCGTGATTACAAATCAAGAAGGAAGGAAGAGCATGCTGAAGCTTGCAGAGAGAATGGCAATAAGCTTTTGTGCTGGAGTGAGCGCCTCAACAACACACACATGGACAACACTATCCGGAACTGGAGCCGATGATGTTAGAGTTATGACTCGAAAAAGCATAGACGATCCCGGCCGTCCACCTGGCATCGTGCTTAGTGCTGCTACTTCCTTCTGGCTCCCTGTCTCTCCCAAAAGAGTTTTCGATTTCCTCCGTGACGAAAATTCTCGGAGCGAGTGGGATATTCTTTCAAATGGTGGAATTGTACAAGAAATGGCACACATTGCTAACGGCAGAGACACAGGCAATTGCGTATCTTTGCTTCGAGTAAATAGCGCAAATTCAAGCCAGAGTAACATGTTGATACTCCAAGAGAGTTGCACAGACGCAACAGCCTCGTTTGTGATCTATGCTCCCGTCGACATTGTCGCTATGAACGTGGTACTAAACGGAGGGGACCCGGATTACGTGGCACTTCTTCCCTCAGGATTTGCAATTCTACCTGATGGAACCACATCTAACTGCGGAGGAGGACCCGAGCCGGGGACCGGAGGGTCCCTCTTGACAGTTGCCTTCCAGATACTGGTTGATTCTGTCCCTACTGCAAAACTATCCCTTGGATCAGTCGCTACCGTTAACAACCTAATTGCTTGTACCGTTGAGAGGATCAAGGCTTCTTTGACCTGCGAGAATGCATGA | 2295 | 47.54 | MPAGIMNAARNTPSMIGRNGNVNSFGSSSSLNLSQPNNMMESQVLHPLNMAQNTSDSNLAARIRNDDFDTATKSGSENQDLASGDDQEPRAKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRTENEKLRSDNIRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVLNYPLISPEPSNSRPLELGVGNYGGQSGNIGGDVFVAEDLLGSISAPTEADKPMIIELAVAAMEELIRMAQMGDPLWVRSGIDGTTCVLNEDEYLRTFPRGIGPKPSGFICEASRETAVVIMNHINLVEILMDVNQWSTVFSGIVSRALTLEVLSTGVAGNYNGALQVMTSEFQVPSPLVPTRESYYVRYCKQHADGTWAVVDVSLDNLRPSPAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYRQLVSSGHAFGAKHWVSTLDRQCERLASAMATNIPTGDVGVITNQEGRKSMLKLAERMAISFCAGVSASTTHTWTTLSGTGADDVRVMTRKSIDDPGRPPGIVLSAATSFWLPVSPKRVFDFLRDENSRSEWDILSNGGIVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDATASFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTTSNCGGGPEPGTGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLTCENA | 764 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 10229796 | 10235076 | + | Conep12aG0142800.1 | Cone12ag1384 | 450228 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone12ag1384 | 764 | SMART | HOX_1 | 91 | 154 | IPR001356 | GO:0003677(InterPro) | |
| Cone12ag1384 | 764 | Gene3D | - | 79 | 167 | - | - | |
| Cone12ag1384 | 764 | ProSiteProfiles | 'Homeobox' domain profile. | 90 | 150 | IPR001356 | GO:0003677(InterPro) | |
| Cone12ag1384 | 764 | FunFam | Homeobox-leucine zipper protein HDG1 | 77 | 166 | - | - | |
| Cone12ag1384 | 764 | SMART | START_1 | 284 | 505 | IPR002913 | GO:0008289(InterPro) | |
| Cone12ag1384 | 764 | Pfam | Homeodomain | 93 | 148 | IPR001356 | GO:0003677(InterPro) | |
| Cone12ag1384 | 764 | MobiDBLite | consensus disorder prediction | 12 | 35 | - | - | |
| Cone12ag1384 | 764 | MobiDBLite | consensus disorder prediction | 69 | 100 | - | - | |
| Cone12ag1384 | 764 | SUPERFAMILY | Bet v1-like | 275 | 507 | - | - | |
| Cone12ag1384 | 764 | CDD | START_ArGLABRA2_like | 279 | 504 | - | - | |
| Cone12ag1384 | 764 | CDD | homeodomain | 93 | 151 | IPR001356 | GO:0003677(InterPro) | |
| Cone12ag1384 | 764 | Gene3D | - | 342 | 502 | IPR023393 | - | |
| Cone12ag1384 | 764 | SUPERFAMILY | Bet v1-like | 524 | 756 | - | - | |
| Cone12ag1384 | 764 | ProSiteProfiles | START domain profile. | 275 | 508 | IPR002913 | GO:0008289(InterPro) | |
| Cone12ag1384 | 764 | SUPERFAMILY | Homeodomain-like | 82 | 150 | IPR009057 | - | |
| Cone12ag1384 | 764 | ProSitePatterns | 'Homeobox' domain signature. | 125 | 148 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
| Cone12ag1384 | 764 | FunFam | Homeobox-leucine zipper protein GLABRA 2 | 284 | 504 | - | - | |
| Cone12ag1384 | 764 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 | 75 | 761 | IPR042160 | - | |
| Cone12ag1384 | 764 | Pfam | START domain | 285 | 505 | IPR002913 | GO:0008289(InterPro) | |
| Cone12ag1384 | 764 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
| Cone12ag1384 | 764 | Coils | Coil | 156 | 176 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone11ag0240 | Cone-Chr11:1158833 | Cone12ag1384 | Cone-Chr12:10229796 | 7.05E-28 | dispersed | |
| Cone11ag0241 | Cone-Chr11:1160055 | Cone12ag1384 | Cone-Chr12:10229796 | 2.08E-51 | dispersed | |
| Cone11ag0406 | Cone-Chr11:2008083 | Cone12ag1384 | Cone-Chr12:10229796 | 3.16E-268 | dispersed | |
| Cone12ag0484 | Cone-Chr12:3140093 | Cone12ag1384 | Cone-Chr12:10229796 | 4.89E-194 | dispersed | |
| Cone12ag1384 | Cone-Chr12:10229796 | Cone3ag1343 | Cone-Chr3:32393603 | 0 | dispersed | |
| Cone10ag1284 | Cone-Chr10:9902693 | Cone12ag1384 | Cone-Chr12:10229796 | 0 | wgd | |
| Cone12ag1384 | Cone-Chr12:10229796 | Cone14ag1128 | Cone-Chr14:9389140 | 2.67E-108 | wgd | |
| Cone12ag1384 | Cone-Chr12:10229796 | Cone15ag1147 | Cone-Chr15:9316403 | 6.87E-16 | wgd | |
| Cone12ag1384 | Cone-Chr12:10229796 | Cone3ag1342 | Cone-Chr3:32391730 | 9.30E-66 | wgd | |
| Cone12ag1384 | Cone-Chr12:10229796 | Cone8ag1442 | Cone-Chr8:11179665 | 0 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 44538 | PF12689 | Acid_PPase | 3.60E-29 | CL0137 | Cone | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone12ag1384 | K09338 | - | cit:102613029 | 1277.31 |