Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1386 ATGTCTGAACTGGACACTCAGATTCCATCTGCTTTTGACCCATTTGCCGATGCAAATGCTGAGGACTCGGGTGCTGGTTCAAAAGAATACGTACATGTGCGCATACAGCAACGTAACGGAAGAAAAAGCCTGACCACTGTCCCAGGATTGAAGAAGGAGTATAGCTACAACAAGATTCTCAAGGACCTCAAAAAGGAATTCTGCTGTAATGGTACTGTTGTCCAAGACCCAGAGCTAGGCCAGGTCATACAACTTCAGCGAGACCAAAGAAAGAATGTTTCAACCTTCCTTGTGCAGGCTGGCATTGTGAAGAAGGAACATATCAAGATTCATGGATTCTGA 342 45.03 MSELDTQIPSAFDPFADANAEDSGAGSKEYVHVRIQQRNGRKSLTTVPGLKKEYSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQRDQRKNVSTFLVQAGIVKKEHIKIHGF 113
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10243169 10244974 - Conep12aG0143000.1 Cone12ag1386 450230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1386 113 ProSiteProfiles Translation initiation factor SUI1 family profile. 31 101 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
Cone12ag1386 113 CDD eIF1_SUI1 29 112 IPR005874 GO:0003743(InterPro)
Cone12ag1386 113 NCBIfam translation initiation factor SUI1 6 113 IPR005874 GO:0003743(InterPro)
Cone12ag1386 113 PIRSF Transl_init_SUI1_Euk 1 113 IPR005874 GO:0003743(InterPro)
Cone12ag1386 113 Pfam Translation initiation factor SUI1 28 102 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
Cone12ag1386 113 MobiDBLite consensus disorder prediction 1 23 - -
Cone12ag1386 113 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 1 113 - GO:0003723(PANTHER)
Cone12ag1386 113 FunFam Eukaryotic translation initiation factor SUI1 2 113 - -
Cone12ag1386 113 Gene3D - 1 113 - -
Cone12ag1386 113 SUPERFAMILY eIF1-like 4 113 IPR036877 GO:0003743(InterPro)|GO:0006413(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1386 Cone-Chr12:10243169 Cone9ag0084 Cone-Chr9:368946 2.03E-57 dispersed
Cone12ag1386 Cone-Chr12:10243169 Cone14ag1124 Cone-Chr14:9356178 6.11E-68 wgd
Cone12ag1386 Cone-Chr12:10243169 Cone15ag1143 Cone-Chr15:9273928 6.11E-68 wgd
Cone12ag1386 Cone-Chr12:10243169 Cone6ag0069 Cone-Chr6:358748 1.17E-56 wgd
Cone12ag1386 Cone-Chr12:10243169 Cone8ag1444 Cone-Chr8:11192286 6.08E-75 wgd
Cone12ag1386 Cone-Chr12:10243169 Cone9ag0099 Cone-Chr9:430680 5.24E-68 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1386 K03113 - gmx:100306129 215.698