Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1389 ATGGCGATTCCAAAGAATTTTTCAGCTCATGTGTTTCTACAGTTGATGCTTACTCTAATTTGTATCATAGAAGTTGGAAAAGCTAAAAGCTTGACATATGGGTTTTACAAGGAAACCTGCCCAGAAGTAGAGGCCATTGTCGCGAAAACGGTAAAGCAGTACATCTCTAGAGTGCCAACCCTTGCCGCTCCTTTGTTGAGGATGCACTTCCATGATTGCTTTGTTAGGGGATGTGATGGTTCAATTCTGATAAATTCTACACCAAACAATACAGCAGAGAAAGATGGGATACCAAATCTAAGTCTAAGAGGGTACAACATAATTGATATTGTGAAATCAGCCTTAGAGAAGAAGTGCCCTAATGCGGTTTCTTGTGCTGATATTTTAGCCTTGGTAACTCGAGATGCTGTCATGACGATTGGTGGACCGTTTTGGCCAGTTCCAACAGGAAGAAGAGACGGAAGAATATCATTAGCTTCAGAGACTCTCCAAAATTTATTACCCGGTTTTGCTAACATTACACAGCTAAAAGCAGGTTTTGCGGCAAAGGGTCTTAGTGTTAAAGACCTAGTCGTCTTATCAGGGGGACACACAATTGGGACATCTCTATGCTCCTCTTTCTCGAACCGGTTGTATAATTTTTCCGGCAAAGGCGACAGCGACAGCGACCCCACACTGGACAAACAGTACGTTGCTAACTTGAGGAAGAAATGCCCGAAAGGCGACCAAAGAAGGTTTGTCGAGATGGATCCAGGGAGTTTTAAGACATTCGATGAAGATTACTATGTTCTTGTCTCCAAAAGAAGGGGCCTGTTCGAGTCTGACTCAGCACTGCTTAATGACCCTGAGACCAAAGCTTACGTGCAGAAACAGGTCAGCACAAAGGGATCCACCTTTGCTGCTGACTTTGCCGAATCGATGGTCACGATGGGACAGATTGGGGTCCTCACTGGGACGGATGGAGAAATCAGGAAGCACTGTGCTTTTGTTAACTGA 996 44.38 MAIPKNFSAHVFLQLMLTLICIIEVGKAKSLTYGFYKETCPEVEAIVAKTVKQYISRVPTLAAPLLRMHFHDCFVRGCDGSILINSTPNNTAEKDGIPNLSLRGYNIIDIVKSALEKKCPNAVSCADILALVTRDAVMTIGGPFWPVPTGRRDGRISLASETLQNLLPGFANITQLKAGFAAKGLSVKDLVVLSGGHTIGTSLCSSFSNRLYNFSGKGDSDSDPTLDKQYVANLRKKCPKGDQRRFVEMDPGSFKTFDEDYYVLVSKRRGLFESDSALLNDPETKAYVQKQVSTKGSTFAADFAESMVTMGQIGVLTGTDGEIRKHCAFVN 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10249372 10250673 + Conep12aG0143300.1 Cone12ag1389 450233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1389 331 Gene3D Peroxidase, domain 2 167 310 - -
Cone12ag1389 331 PRINTS Haem peroxidase superfamily signature 250 265 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag1389 331 PRINTS Haem peroxidase superfamily signature 141 153 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag1389 331 PRINTS Haem peroxidase superfamily signature 123 140 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag1389 331 PRINTS Haem peroxidase superfamily signature 62 76 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag1389 331 PRINTS Haem peroxidase superfamily signature 189 204 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag1389 331 PANTHER PEROXIDASE 25-RELATED 22 327 IPR000823 GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Cone12ag1389 331 CDD secretory_peroxidase 31 330 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cone12ag1389 331 ProSiteProfiles Plant heme peroxidase family profile. 30 331 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag1389 331 ProSitePatterns Peroxidases proximal heme-ligand signature. 189 199 IPR019793 -
Cone12ag1389 331 FunFam Peroxidase 167 310 - -
Cone12ag1389 331 PRINTS Plant peroxidase signature 40 59 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag1389 331 PRINTS Plant peroxidase signature 141 156 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag1389 331 PRINTS Plant peroxidase signature 305 318 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag1389 331 PRINTS Plant peroxidase signature 103 116 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag1389 331 PRINTS Plant peroxidase signature 264 281 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag1389 331 PRINTS Plant peroxidase signature 64 84 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag1389 331 PRINTS Plant peroxidase signature 188 200 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag1389 331 PRINTS Plant peroxidase signature 122 132 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag1389 331 PRINTS Plant peroxidase signature 248 263 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag1389 331 Pfam Peroxidase 47 291 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag1389 331 ProSitePatterns Peroxidases active site signature. 62 73 IPR019794 GO:0004601(InterPro)
Cone12ag1389 331 SUPERFAMILY Heme-dependent peroxidases 31 331 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag1389 331 Gene3D - 34 331 - -
Cone12ag1389 331 FunFam Peroxidase 34 179 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1389 Cone-Chr12:10249372 Cone8ag1448 Cone-Chr8:11200470 1.05E-149 dispersed
Cone12ag1389 Cone-Chr12:10249372 Cone12ag1392 Cone-Chr12:10260166 7.80E-73 proximal
Cone11ag1398 Cone-Chr11:10091311 Cone12ag1389 Cone-Chr12:10249372 1.85E-80 transposed
Cone12ag1389 Cone-Chr12:10249372 Cone5ag1767 Cone-Chr5:12566731 9.91E-132 wgd
Cone12ag1389 Cone-Chr12:10249372 Cone8ag1447 Cone-Chr8:11197714 4.01E-120 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1389 K00430 - mdm:103442591 454.136