Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1392 ATGTCCGGCGTTGTCTCTTGTGCCGATACTATCGCTTTGGTTGCTAGAGACTCCATTGTTGCCACTGGAGGTCCGTTTTGGAGTGTTCTGACAGGTCGTAGGGATGGACTGATCTCAAATGCCTCAGAAGCTTTAACTATTATCCCTGCTCCTACTAGCAACTTCACTACTCTCCAAACGCTTTTTGCTAACAAGGGTCTCGATCTAAAAGACTTGGTCCTGCTATCTGGAGCTCACACGATCGGCGTGTCTCATTGCTCATCATTTTCCAGCCGTCTGTACAATTTCACCAGAGTGGGCGATGAAGGAGTGGGCGATGAAGATCCAGCTTTGGACAGCGAATATGCAGCGAATCTAAAAGCCAGAAAGTGCAAGAACGTAAACGATAACACGACGATCGTCGAGATGGATCCCGGAAGCTTTAGAACGTTTGATCTAAGCTACTACACTCTTCTTCTCAAGAGACGTGGTCTGTTCCAATCTGATTCTGCTCTTACCACAAGCTCTACTACAAAAGCGTACGTCACACAACTGGTTCAAGGCCCGCTCGGGAACTTCTACGCTGAATTTGCTAAAGCTATGGAGAAGATGGGTCGGATCAGTGTAAAGACGGGATCGGAGGGTGAGGTTAGGAAGAACTGTGCGGTGGTGAATGGTTAA 660 47.88 MSGVVSCADTIALVARDSIVATGGPFWSVLTGRRDGLISNASEALTIIPAPTSNFTTLQTLFANKGLDLKDLVLLSGAHTIGVSHCSSFSSRLYNFTRVGDEGVGDEDPALDSEYAANLKARKCKNVNDNTTIVEMDPGSFRTFDLSYYTLLLKRRGLFQSDSALTTSSTTKAYVTQLVQGPLGNFYAEFAKAMEKMGRISVKTGSEGEVRKNCAVVNG 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10260166 10260984 + Conep12aG0143600.1 Cone12ag1392 450236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1392 219 SUPERFAMILY Heme-dependent peroxidases 2 218 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag1392 219 Gene3D Peroxidase, domain 2 49 197 - -
Cone12ag1392 219 ProSitePatterns Peroxidases proximal heme-ligand signature. 71 81 IPR019793 -
Cone12ag1392 219 Gene3D - 2 218 - -
Cone12ag1392 219 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag1392 219 PRINTS Plant peroxidase signature 192 205 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag1392 219 PRINTS Plant peroxidase signature 23 38 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag1392 219 PRINTS Plant peroxidase signature 4 14 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag1392 219 PRINTS Plant peroxidase signature 151 168 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag1392 219 PRINTS Plant peroxidase signature 70 82 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag1392 219 ProSiteProfiles Plant heme peroxidase family profile. 1 218 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag1392 219 PRINTS Haem peroxidase superfamily signature 137 152 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag1392 219 PRINTS Haem peroxidase superfamily signature 23 35 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag1392 219 PRINTS Haem peroxidase superfamily signature 5 22 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag1392 219 PRINTS Haem peroxidase superfamily signature 71 86 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag1392 219 FunFam Peroxidase 49 197 - -
Cone12ag1392 219 Pfam Peroxidase 2 179 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag1392 219 CDD secretory_peroxidase 3 217 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cone12ag1392 219 PANTHER PEROXIDASE 25-RELATED 3 214 IPR000823 GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1392 Cone-Chr12:10260166 Cone8ag1449 Cone-Chr8:11205720 9.15E-136 dispersed
Cone12ag1389 Cone-Chr12:10249372 Cone12ag1392 Cone-Chr12:10260166 7.80E-73 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1392 K00430 - vvi:100255112 356.295