Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1399 ATGGACATCGATTCCGTTGGGACTTCTAATTGGCTGTACGACTACGGAATAGTCGATGACATCGCCGTTGCCGCCTGTGACTTTCCGGCTCCGGTCGCTGGCTTCAGCTGGCCTTCGCAGCCTATCAATTCCGCGTCTCACATCAGTGAGGAAGCAGATTACTCTCTTGGGGATGGTCCGGATGGAACAGATAGCCTGAAGGGATCCAGATCAAGAAAACGTTCAAGGCCTGAACAGGCCTGTGCATCTGGTTCAAAAGCTTGCTGGGAGAAACTGAGAAGGGATAGACTTAATGAAAGGTTCCTCGAGTTGGGCTCAATCTTAGAGCCGGGAAAGCTTCCCAAAACTGATAAGGCTACTATTTTGAGCCATGCCGTTCGTATGGTGACCCAATTACAAAGTGATATACTCAAGCTAAAGGAATCAAACGAGAATTTGCAAGCAAAGATTAAAGAACTCAAGGCTGAGAAGATTGAGCTTCGAGATGAGAAGCAGAGGTTGAAGGCAGATAAAGAGAAGTTGGAGCAGCAAGTCAAAGCCCTGAGTTCTCAACCGAACTTCCCAGCTCCTCCTCCTGCCATGTCAGCTGCTTTTGCCACACAAGGGCAAATGGTCGGTAATAAGCTGATGCCTTTTATAGGTTACCCCAGCGTTGCCATGTGGCAGTTCATGCCGCCGGCTGCCGTTGACACGTCACAGGACCATGTGGTGCGCTCTCCAGTTGCTTAA 729 49.66 MDIDSVGTSNWLYDYGIVDDIAVAACDFPAPVAGFSWPSQPINSASHISEEADYSLGDGPDGTDSLKGSRSRKRSRPEQACASGSKACWEKLRRDRLNERFLELGSILEPGKLPKTDKATILSHAVRMVTQLQSDILKLKESNENLQAKIKELKAEKIELRDEKQRLKADKEKLEQQVKALSSQPNFPAPPPAMSAAFATQGQMVGNKLMPFIGYPSVAMWQFMPPAAVDTSQDHVVRSPVA 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10289289 10290970 - Conep12aG0144300.1 Cone12ag1399 450243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1399 242 Pfam Helix-loop-helix DNA-binding domain 87 133 IPR011598 GO:0046983(InterPro)
Cone12ag1399 242 Gene3D arf6 gtpase in complex with a specific effector, jip4 131 185 - -
Cone12ag1399 242 Gene3D - 68 130 IPR036638 GO:0046983(InterPro)
Cone12ag1399 242 SMART finulus 87 138 IPR011598 GO:0046983(InterPro)
Cone12ag1399 242 CDD bHLH_AtILR3_like 86 161 - -
Cone12ag1399 242 MobiDBLite consensus disorder prediction 52 80 - -
Cone12ag1399 242 MobiDBLite consensus disorder prediction 65 79 - -
Cone12ag1399 242 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 88 156 IPR036638 GO:0046983(InterPro)
Cone12ag1399 242 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 81 132 IPR011598 GO:0046983(InterPro)
Cone12ag1399 242 PANTHER BHLH TRANSCRIPTION FACTOR 9 242 IPR044818 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro)
Cone12ag1399 242 Coils Coil 129 184 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1399 Cone-Chr12:10289289 Cone4ag0319 Cone-Chr4:1448078 6.01E-28 dispersed
Cone1ag0107 Cone-Chr1:591227 Cone12ag1399 Cone-Chr12:10289289 1.78E-49 wgd
Cone12ag1399 Cone-Chr12:10289289 Cone14ag1119 Cone-Chr14:9321339 2.95E-73 wgd
Cone12ag1399 Cone-Chr12:10289289 Cone15ag1137 Cone-Chr15:9236738 1.10E-70 wgd
Cone12ag1399 Cone-Chr12:10289289 Cone8ag1455 Cone-Chr8:11228658 1.58E-118 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44541 PF01544 CorA 1.20E-29 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1399 - - - 0.0