Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1413 ATGACAACTGACACAAGCCCTAAGATTTTTAGTTATTCTGAGAATAGTTCCAGGAACACTACTGATAAGCCCATGAGCAATTGCCACCCTCTCACTATGATCACCGGAATTGTTGCTAATGGGCAAGTAAGCTTTGAGGTACCGGGGGGAAGTTTCCGGGTCAAGAGTATAAATCCGGAAGAAAGAAAGTTTCTAGTCCAAACCAATGATGCTGGAAATTGCGGGGATAGGAATTGGACAAACAGAACTCTTAGGCTAAATGAGTCGTCTCCGTACCATGTGATCAACTGGTGCAATGCTGATGACGAAGTGGAGATTGGTTGGGACCCACCATCCGAACCGACTTGTTCTTCACAATTGGACTGTCATGATTGGCCTGATTCGACTTGCAATGTAACTGTTTATGGGAAGAAAAAATGCCTCTGTGAGACTGATTTTCACTGGGATGGCTTGGCAATGAATTGCAGTGCACACGATAGTTATAGAAAGAAAACGGATAGAAGAGAAAAGGCGGCCCTGTCTTTGATTATTGCAGTTACATTTGTAGTTCTGTTCATTTTAATGATTGTGGCTGGTACCATGTTTTATACTTATTTCTGGAGAAGCAGGCAGATGAAGAGACAACAAAGCTGGGGGAACAGTCAGAAGGATGCTGCACTTCAACTCTATGAAAACGAGAGACGAGTCAAGGATCTTCTCGAATCAGGCAGGTTTAAAGAAGAAGATACAAAAGGGATTGACATTCCGTGTTTCGATGTGGAAAGTATTTTAACTGCAACAAGTAACTTCTCAAATGCCAACAAGCTGGGACAAGGAGGATTTGGACCTGTTTACAAGGGCAAGTTTCCTGGTGGACAAGAAGTTGCTGTAAAGAGGCTTTCAAGTGGTTCGGGACAGGGCTTCGAGGAATTCAAGAACGAGGTTCTATTGATCGCAAAACTTCAGCATAGAAATCTCGTTAGACTTCTAGGCTATTGTGTTGAAGGAGATGAGAAGATGTTGCTTTATGAGTACATGCCGAACAAGAGCTTAGACTCCTTCATATTTGATCGGAAGCTATGCGTGTTACTGGACTGGGAAATGCGCTTCAAAATAATTTCGGGCATTGCTCGAGGCCTTCTGTACCTTCACCAAGATTCCAGATTGAGGATTATTCATAGAGATCTCAAAACGAGCAACATTCTTCTAGATGAGGAGATGAATCCGAAAATATCCGATTTTGGCTTGGCGAGGATCTTCGGAGGCAAAGAAACCGTTACAAATACCAAAAGAGTAGTAGGAACTTATGGGTACATGTCACCAGAGTATGCATTAGACGGGTTATTTTCGGTCAAATCCGACGTCTTCAGCTTTGGCGTAGTAATTATAGAGATGATAAGTGGAAAAAGAAACACTGGATTCTATCACTCGGAACAAGCTTTGAGTCTTTTAGGCTATGCATGGCATATGTGGATAGAAGACAAGGCAATGGATTTGATGGACCCTACACTGTGTAGGAAAAATTGCAACACAAATGAATATATGAAGTGTGTGAATTTAGGGCTTTTATGTGTACAAGAAGATCCATGTGATAGGCCTACAATGTCTAATGTGATTTTCATGCTTGGGAGTGAAACGGCAACTCTTCCTTCTCCGAAACAGCCGGCTTTCGTAGTGAGGAGATGTCCTTCCAGTCGAGCTTCTTCTTCCGGTAAACCAGAAACTTTCTCGAATAACGAGCTAACTGTCACTTTAGAAGATGGCAGATAG 1749 42.48 MTTDTSPKIFSYSENSSRNTTDKPMSNCHPLTMITGIVANGQVSFEVPGGSFRVKSINPEERKFLVQTNDAGNCGDRNWTNRTLRLNESSPYHVINWCNADDEVEIGWDPPSEPTCSSQLDCHDWPDSTCNVTVYGKKKCLCETDFHWDGLAMNCSAHDSYRKKTDRREKAALSLIIAVTFVVLFILMIVAGTMFYTYFWRSRQMKRQQSWGNSQKDAALQLYENERRVKDLLESGRFKEEDTKGIDIPCFDVESILTATSNFSNANKLGQGGFGPVYKGKFPGGQEVAVKRLSSGSGQGFEEFKNEVLLIAKLQHRNLVRLLGYCVEGDEKMLLYEYMPNKSLDSFIFDRKLCVLLDWEMRFKIISGIARGLLYLHQDSRLRIIHRDLKTSNILLDEEMNPKISDFGLARIFGGKETVTNTKRVVGTYGYMSPEYALDGLFSVKSDVFSFGVVIIEMISGKRNTGFYHSEQALSLLGYAWHMWIEDKAMDLMDPTLCRKNCNTNEYMKCVNLGLLCVQEDPCDRPTMSNVIFMLGSETATLPSPKQPAFVVRRCPSSRASSSGKPETFSNNELTVTLEDGR 582
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10327058 10329288 - Conep12aG0145900.1 Cone12ag1413 450257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1413 582 Pfam Domain of unknown function (DUF3403) 537 582 IPR021820 GO:0004674(InterPro)
Cone12ag1413 582 Pfam Protein tyrosine and serine/threonine kinase 266 532 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone12ag1413 582 CDD STKc_IRAK 269 535 - -
Cone12ag1413 582 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 228 338 - -
Cone12ag1413 582 ProSiteProfiles Protein kinase domain profile. 263 550 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag1413 582 MobiDBLite consensus disorder prediction 558 582 - -
Cone12ag1413 582 ProSitePatterns Serine/Threonine protein kinases active-site signature. 384 396 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone12ag1413 582 Gene3D Phosphorylase Kinase; domain 1 225 338 - -
Cone12ag1413 582 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 131 551 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cone12ag1413 582 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 339 543 - -
Cone12ag1413 582 SMART serkin_6 263 534 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag1413 582 MobiDBLite consensus disorder prediction 1 25 - -
Cone12ag1413 582 Gene3D Transferase(Phosphotransferase) domain 1 339 544 - -
Cone12ag1413 582 SUPERFAMILY Protein kinase-like (PK-like) 247 535 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1413 Cone-Chr12:10327058 Cone14ag1106 Cone-Chr14:9218777 1.32E-143 dispersed
Cone12ag1413 Cone-Chr12:10327058 Cone12ag1415 Cone-Chr12:10330505 0 proximal
Cone10ag1305 Cone-Chr10:10183519 Cone12ag1413 Cone-Chr12:10327058 1.93E-217 wgd
Cone12ag1413 Cone-Chr12:10327058 Cone14ag1104 Cone-Chr14:9211550 1.91E-142 wgd
Cone12ag1413 Cone-Chr12:10327058 Cone15ag1114 Cone-Chr15:9112166 1.31E-139 wgd
Cone12ag1413 Cone-Chr12:10327058 Cone3ag1372 Cone-Chr3:32704170 6.35E-102 wgd
Cone12ag1413 Cone-Chr12:10327058 Cone6ag0103 Cone-Chr6:501150 2.11E-130 wgd
Cone12ag1413 Cone-Chr12:10327058 Cone6ag1043 Cone-Chr6:5995292 9.93E-25 wgd
Cone12ag1413 Cone-Chr12:10327058 Cone6ag1065 Cone-Chr6:6254890 2.91E-139 wgd
Cone12ag1413 Cone-Chr12:10327058 Cone9ag0121 Cone-Chr9:528827 4.85E-78 wgd
Cone12ag1413 Cone-Chr12:10327058 Cone9ag1057 Cone-Chr9:5762145 5.39E-140 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81986 PF00999 Na_H_Exchanger 1.20E-70 CL0064 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1413 - - - 0.0