Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1429 ATGACATTTTCCTCGTTTCTGAGCAGAGCTTTCCATGGCTACTCTGCCTACTCTAAGCTTCTCGTTGTCTGCACAGTCAGTAGCGGTGGTCTAGTTGCATACTCGGAATCACAAACAAACATTGTCACTCCTACAGAAGAGGAGCCGAAGAAAAAGAAGGTTTTGGTGCTTGGAACTGGCTGGGCTGGTACTAGTTTCCTAAAGGATCTGGATGCTTCAATATATGATGTTCAAGTCATTTCTCCCTGCAACTACTTTGCATTCACCCCATTATTACCTAGTGTTACATGCGGGACGGTTGAAGCTAGGAGCATCGTAGAACCAGTACGAAACATCATAAAGAAGAGAAAAGGTGAAATACGATACTGGGAAGCAGAATGCATCAAGATAGATGCTGCTAACAAAAAGGTTTTCTGCCGCTCGGACAACGACCATAACCTGGTTGGGAGTAAAGATTTCTCTTTAGACTATGACTACTTGGTAATAGCATTAGGGGCACAAGTTAATACTTTTAACACTCCTGGCGTCAAGGAAAACTGCCATTTTCTCAAGGAAGTAGAGGATGCTCAAAAGCTCCGTAGAAGTGTGATAGATTGCTTTGAAATGGCTGTGCTTCCTAGTCTGAGTGAGGATGAACGGAGGAGAAATCTTCATTTTGTAATAGTTGGTGGGGGTCCAACTGGTGTGGAGTTTGCTGCAGAGCTGCATGATTACGTCAATGAAGATCTAGGCAGCTTGTATCCCTCTGTTGCAGATCTGGTCACAATTAGCGTGATTCAATCAGGAGATCACATCTTGAACACGTTTGATGAAAGAATTAGTTCGTTTGCGGAACAGAAATTTGGTCGGGATGGTATTGAAGTGAAAACAGGATGTCGGGTTCTGAATGTTTCAGATAAGGAAATTGAAATGAAAATGAAATCAACGGGAGAAGTATGCCGTATACCCCATGGGCTAGTTGTGTGGTCTACTGGCATTGGGACTCGTCCTGTCGTGAAGGACTTCATGGAGCAAATTGGACAGGCCAACAGACGTGTTCTAGCAACCGATGAATGGTTGCGAGTAAAGGGTTGTTTAGACATATATGCTATTGGTGATTGTGCTACCATTGATCAACGCAAGGTTATGGAAGACATTTCCACGATATTTGAGGCTGCGGATAAAGACAACTCTGGTACCCTAACAGTTGAGGAATTCCGAGATGTAGTTGATGACATCCTCATAAGGTACCCCCAAGTGGATCTCTATCTCAAGAGCAAGCATCTGTTAGATTTAACAGATCTGCTGCGAGATTCTGATGGGAATGAGAGGAATGAAGTGGATATAGAAGGTTTCAAGTTGGCCCTTTCTCATGTGGACTTGCAGATAAAGAGTCTACCAGCTTCTGCTCAGGTTGCTGCTCAACAGGGTGCATATCTTTCTAGATGCTTCAACCAAAGCGAGCAGTGTAGGGATAGTCCAGAAGGTCCGAGACACTTCAAAAGTTCTGGGCGTCATCGGTTTCTTCCCTTTCGCTACAAGCATTTAGGGCAGTTTGCTCCTCTGGGAGGAGAACAGGCAGCTGCGGAACTTCCTGGAGACTGGGTTTCGATGGGACATAGTACCCAGTGGCTCTGGTATTCAGTTTATGCGAGCAAACAAGTGAGCTGGCGCACTAGGTGTCTGGTTGTGTTTGATTGGACAAGGAGGTACATTTTCGGGAGAGACTCGAGCCGCATTTGA 1722 45.01 MTFSSFLSRAFHGYSAYSKLLVVCTVSSGGLVAYSESQTNIVTPTEEEPKKKKVLVLGTGWAGTSFLKDLDASIYDVQVISPCNYFAFTPLLPSVTCGTVEARSIVEPVRNIIKKRKGEIRYWEAECIKIDAANKKVFCRSDNDHNLVGSKDFSLDYDYLVIALGAQVNTFNTPGVKENCHFLKEVEDAQKLRRSVIDCFEMAVLPSLSEDERRRNLHFVIVGGGPTGVEFAAELHDYVNEDLGSLYPSVADLVTISVIQSGDHILNTFDERISSFAEQKFGRDGIEVKTGCRVLNVSDKEIEMKMKSTGEVCRIPHGLVVWSTGIGTRPVVKDFMEQIGQANRRVLATDEWLRVKGCLDIYAIGDCATIDQRKVMEDISTIFEAADKDNSGTLTVEEFRDVVDDILIRYPQVDLYLKSKHLLDLTDLLRDSDGNERNEVDIEGFKLALSHVDLQIKSLPASAQVAAQQGAYLSRCFNQSEQCRDSPEGPRHFKSSGRHRFLPFRYKHLGQFAPLGGEQAAAELPGDWVSMGHSTQWLWYSVYASKQVSWRTRCLVVFDWTRRYIFGRDSSRI 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10380651 10384366 - Conep12aG0147500.1 Cone12ag1429 450273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1429 573 PANTHER NADH DEHYDROGENASE 38 573 IPR045024 GO:0003954(InterPro)|GO:0006116(InterPro)
Cone12ag1429 573 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 420 572 - -
Cone12ag1429 573 ProSiteProfiles EF-hand calcium-binding domain profile. 374 409 IPR002048 GO:0005509(InterPro)
Cone12ag1429 573 Gene3D - 42 390 - -
Cone12ag1429 573 Gene3D - 425 572 - -
Cone12ag1429 573 PRINTS FAD-dependent pyridine nucleotide reductase signature 54 73 - -
Cone12ag1429 573 PRINTS FAD-dependent pyridine nucleotide reductase signature 218 236 - -
Cone12ag1429 573 PRINTS FAD-dependent pyridine nucleotide reductase signature 157 175 - -
Cone12ag1429 573 ProSitePatterns EF-hand calcium-binding domain. 387 399 IPR018247 -
Cone12ag1429 573 SMART efh_1 378 406 IPR002048 GO:0005509(InterPro)
Cone12ag1429 573 SUPERFAMILY FAD/NAD(P)-binding domain 51 270 IPR036188 -
Cone12ag1429 573 SUPERFAMILY FAD/NAD(P)-binding domain 217 371 IPR036188 -
Cone12ag1429 573 SUPERFAMILY EF-hand 370 458 IPR011992 -
Cone12ag1429 573 Pfam Pyridine nucleotide-disulphide oxidoreductase 52 373 IPR023753 GO:0016491(InterPro)
Cone12ag1429 573 Pfam NDH2 C-terminal domain 508 569 IPR054585 -
Cone12ag1429 573 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 42 403 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1429 Cone-Chr12:10380651 Cone1ag0564 Cone-Chr1:5754168 2.88E-69 dispersed
Cone12ag1429 Cone-Chr12:10380651 Cone12ag1430 Cone-Chr12:10384867 1.35E-272 tandem
Cone1ag0134 Cone-Chr1:748620 Cone12ag1429 Cone-Chr12:10380651 8.47E-67 wgd
Cone12ag1429 Cone-Chr12:10380651 Cone5ag1731 Cone-Chr5:12311927 2.51E-64 wgd
Cone12ag1429 Cone-Chr12:10380651 Cone6ag1051 Cone-Chr6:6132461 2.83E-286 wgd
Cone12ag1429 Cone-Chr12:10380651 Cone6ag1051 Cone-Chr6:6132461 2.83E-286 wgd
Cone12ag1429 Cone-Chr12:10380651 Cone8ag1493 Cone-Chr8:11353829 0 wgd
Cone12ag1429 Cone-Chr12:10380651 Cone9ag1046 Cone-Chr9:5669504 1.09E-283 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1429 K03885 - csv:101203130 934.095