Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1436 ATGGGGCGGAAGAGATCTGGTTTGAGGAAGAAGAATCTGGGGATCTACGCACAGTTTTTAGCGGGCTTCGTGTTGATCTGTGCTGTACAAGTTTCGCTTGGAATTACTAATCCCAATGACTTTACTGCCATTAGTAACTTGTATACTTCGTGGGGTTCCCCTGTTCTTCCTGGCTGGGGTGTTGGACAAGACCCGTGTGGTGATAAGTGGCAAGGCGTTGAATGTAATAACTCCGTCATTATAAGAATAGTTATTAATGCTGCTACTTTGGGAGGAGAGTTGAGTGATAGCTTGGGAATGTTCACTTCTATCCAATCAATAGACCTCAGCAACAATAACATTGGGGGAAGTATTCCATCGAACTTGCCTGTTACTATGCAAAACCTTTTTCTTTCAGCTAATCAATTTACTGGAAGCATCCCAAGTTCCTTATCATCTTTGACTCAGCTAGCAGCCATGTCACTGAATGACAATCACTTAAGTGGAGAAATACCAGATTCTTTTGCAGCTCTTACAGGATTGGTCAACTTGGACTTATCCAGCAACAATTTTAGCGGTCCACTGCCTTCCTCTCTACAAGATTTAGTGGTTTTGACCACTCTGCGTTTGCAGAATAATCAGCTTTTGGGGACCCTCAACGTTTTACAGGATCTTCCAATAAAAGACTTGAATGTAGAGAATAATCTCTTCTCTGGACCCATACCTGAAAAGTTACTGAATATCCCAACTTTTAGAAAGGATGGAAACCCATGGAATTCTACTGTTTCTCCAGCATCTCCACCTTCACTCTCATCAAAGCCTTCACAGGCGGGTCCATCACCATCATTTTTTCCAACACCACCTTCTGGGAAGTCACCCGCAAAACAGTCTGATGGACCATCTGCCTCAAAGGAATCAAATGCTGGAAAAAAGGGTAAATCTACCAAAAGGGTAGTTTGGATATCAATTGCAGGAGTGTTGTCATTTATTATTTTGGCTCTAGCACTTGTGCTTTTTATGCCAAGGTGTATGAAAAGGAGCAGAAGGGCCGACGCAATTTCCAAGCGGCATCAAATAGGTGCTTACAGGGGTGACAGAGAGAGTCCCAGGCACAGTCCCTTGGTCCAGCCAACCAGTGAAACACATAAAGTTCCAATACCTAAGGAGGATGTTCCAGTGCCAAAGGAGGAACATCAAACAGAGACTCAAAGAGTGGGGGCAATACGAAAGCCACAGAAAGAGAAAGAGAGAGATATGCAAAGAATGGGCATAAGACCAAAACAAGATGATCATGAGATAGACATTAGTGCAGATGATGTTCATCTGATGCCTCCTCCTCCACCACCACCTCCTGTTCAGAAGGTCATCGTTGAACCTATTGTTCCAGCTGAAGTTTCTCCTGTAAGGCCTTCCAGCAGAACAATCAATACCCCTACTTTTGCAAAGTCCTTCACCATTGCATCCCTTCAGCAATATACAAATAGCTTTTCACAAGAGAATCTCATTGGAGTCGGAATGCTGGGTAGTGTTTATAGGGCACGGCTTCCTAATGGAAAGCTGCTTGCGGTGAAGAAACTGGACAAAAGAGCTTCCAGTGTGCAGAAGAACAATGAATTCCTTGAGTTAGTGAACGACATTGATAAAATCCGACATGCAAATGTCGTTGAACTTGTGGGCTGTTGTGCGGAGCATGATCAAAGGCTTCTGATTTACGAGTACTGCATTAATGGAACTCTACAGGACGCTCTACATTCAGATGAGGAATTCAAAAAGAAACTCTCTTGGAATGCCCGTGTTCGAATGGCCCTTGGGGCTGCTAGAGCACTAGAGTACTTGCATGAGGTCTGTCATCCGCCTGTTATACACAGGAACTTCAAGTCTGCAAATGTTCTTCTTGATGATGAACTCTCTGTGCATGTCTCTGATTGTGGTTTAGCTCGATTGATATCATCTGGTTCTGTTAGTCAGTTATCAGGGCATCTACTATCAATGTATGGCTATGGGGCTCCAGAATTTGAATCCGGCATTTATACGCTTCAAAGTGACGGTTATAGCTTTGGGGTTGTCATGTTAGAGCTTTTGACCGGCCGAATGTCCTATGACAAGGCAAAGACTAGAGGAGAGCAATTTCTGGTGAGATGGGCAATCCCACAGCTTCATGACATTGATGCATTATCAAGAATGGTTGATCCTTCTCTCCATGGTCAATATCCAGCAAAATCCTTGTCGCACTTTGCCGATATCATATCTCGATGTGTTCAGCCGGAGCCTGAATTCAGGCCACTCATGTCAGAAGTTGTACAGGACTTATTTGACATGCTAAGGAGAGAGCCACGTGGCAGTGGATCAAGCCAGGATTGA 2340 44.06 MGRKRSGLRKKNLGIYAQFLAGFVLICAVQVSLGITNPNDFTAISNLYTSWGSPVLPGWGVGQDPCGDKWQGVECNNSVIIRIVINAATLGGELSDSLGMFTSIQSIDLSNNNIGGSIPSNLPVTMQNLFLSANQFTGSIPSSLSSLTQLAAMSLNDNHLSGEIPDSFAALTGLVNLDLSSNNFSGPLPSSLQDLVVLTTLRLQNNQLLGTLNVLQDLPIKDLNVENNLFSGPIPEKLLNIPTFRKDGNPWNSTVSPASPPSLSSKPSQAGPSPSFFPTPPSGKSPAKQSDGPSASKESNAGKKGKSTKRVVWISIAGVLSFIILALALVLFMPRCMKRSRRADAISKRHQIGAYRGDRESPRHSPLVQPTSETHKVPIPKEDVPVPKEEHQTETQRVGAIRKPQKEKERDMQRMGIRPKQDDHEIDISADDVHLMPPPPPPPPVQKVIVEPIVPAEVSPVRPSSRTINTPTFAKSFTIASLQQYTNSFSQENLIGVGMLGSVYRARLPNGKLLAVKKLDKRASSVQKNNEFLELVNDIDKIRHANVVELVGCCAEHDQRLLIYEYCINGTLQDALHSDEEFKKKLSWNARVRMALGAARALEYLHEVCHPPVIHRNFKSANVLLDDELSVHVSDCGLARLISSGSVSQLSGHLLSMYGYGAPEFESGIYTLQSDGYSFGVVMLELLTGRMSYDKAKTRGEQFLVRWAIPQLHDIDALSRMVDPSLHGQYPAKSLSHFADIISRCVQPEPEFRPLMSEVVQDLFDMLRREPRGSGSSQD 779
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10403858 10408388 - Conep12aG0148800.1 Cone12ag1436 450280

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1436 779 MobiDBLite consensus disorder prediction 376 419 - -
Cone12ag1436 779 SUPERFAMILY L domain-like 55 243 - -
Cone12ag1436 779 MobiDBLite consensus disorder prediction 282 301 - -
Cone12ag1436 779 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 456 566 - -
Cone12ag1436 779 Gene3D Transferase(Phosphotransferase) domain 1 568 770 - -
Cone12ag1436 779 MobiDBLite consensus disorder prediction 250 307 - -
Cone12ag1436 779 SUPERFAMILY Protein kinase-like (PK-like) 463 764 IPR011009 -
Cone12ag1436 779 MobiDBLite consensus disorder prediction 250 272 - -
Cone12ag1436 779 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 37 262 - -
Cone12ag1436 779 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 567 776 - -
Cone12ag1436 779 Gene3D Ribonuclease Inhibitor 38 264 IPR032675 -
Cone12ag1436 779 Pfam Protein tyrosine and serine/threonine kinase 492 763 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone12ag1436 779 Pfam Leucine Rich Repeat 174 195 IPR001611 GO:0005515(InterPro)
Cone12ag1436 779 Pfam Leucine Rich Repeat 103 122 IPR001611 GO:0005515(InterPro)
Cone12ag1436 779 Pfam Leucine Rich Repeat 127 147 IPR001611 GO:0005515(InterPro)
Cone12ag1436 779 MobiDBLite consensus disorder prediction 342 363 - -
Cone12ag1436 779 ProSiteProfiles Protein kinase domain profile. 489 765 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag1436 779 PANTHER LEUCINE RICH REPEAT KINASE 2 84 763 IPR051420 -
Cone12ag1436 779 MobiDBLite consensus disorder prediction 342 419 - -
Cone12ag1436 779 Gene3D Phosphorylase Kinase; domain 1 459 566 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1436 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1436 Cone-Chr12:10403858 Cone5ag1846 Cone-Chr5:12958518 3.21E-125 dispersed
Cone12ag1436 Cone-Chr12:10403858 Cone6ag1064 Cone-Chr6:6225237 3.80E-185 wgd
Cone12ag1436 Cone-Chr12:10403858 Cone8ag1487 Cone-Chr8:11333661 0 wgd
Cone12ag1436 Cone-Chr12:10403858 Cone9ag1056 Cone-Chr9:5752906 1.91E-182 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g488 . Blo15g00549 . Bda13g00653 . . . . Cmo11g01937 Cmo19g01004 . . . . . Cpe15g00790 Cpe04g00762 Bhi05g01832 . . . . . . . . . . . . . . . . Cone12ag1436 . Csa07g00420 . . . . . . Bpe14g00667 . Bma02g01363 Bma12g00749 . . . Cma11g01861 Cma19g00972 Car11g01549 Car19g00763 . . . . . . . . . . . . . . . . Lsi11g01525 . Chy01g00369 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone8ag1487 . 31 789 Strubbelig Receptor Gene Family AT4G03390 61.9 2.4e-205 713.0
Cone12ag1436 . 31 777 Strubbelig Receptor Gene Family AT4G03390 60.9 6.9e-205 711.4
Cone6ag1064 . 28 731 Strubbelig Receptor Gene Family AT4G03390 53.4 3.7e-166 582.8
Cone9ag1056 . 28 731 Strubbelig Receptor Gene Family AT4G03390 52.8 5.9e-164 575.5
Cone19ag0495 . 2 741 Strubbelig Receptor Gene Family AT5G06820 52.6 1.3e-184 644.0
Cone4ag0869 . 21 700 Strubbelig Receptor Gene Family AT1G78980 63.8 1.1e-193 674.1
Cone7ag0827 . 30 667 Strubbelig Receptor Gene Family AT1G78980 50.1 6.1e-136 482.3
Cone4ag0853 . 30 695 Strubbelig Receptor Gene Family AT1G78980 52.6 2.6e-134 476.9
Cone17ag0031 . 25 671 Strubbelig Receptor Gene Family AT1G78980 51.8 4.7e-128 456.1
Cone8ag1487 . 21 665 Strubbelig Receptor Gene Family AT2G20850 50.3 9.1e-134 474.9
Cone4ag0869 . 19 679 Strubbelig Receptor Gene Family AT3G13065 55.8 1.3e-149 527.7
Cone4ag0853 . 12 690 Strubbelig Receptor Gene Family AT3G13065 50.2 3.9e-111 399.8
Cone17ag0031 . 23 668 Strubbelig Receptor Gene Family AT3G13065 51.0 3.9e-111 399.8
Cone6ag1064 . 448 731 Strubbelig Receptor Gene Family AT3G13065 52.3 1.6e-80 298.1
Cone9ag1056 . 448 731 Strubbelig Receptor Gene Family AT3G13065 50.9 2.6e-78 290.8
Cone17ag0031 . 384 668 Strubbelig Receptor Gene Family AT1G11130 53.0 1.5e-81 301.6
Cone4ag0853 . 404 690 Strubbelig Receptor Gene Family AT1G11130 51.6 8.0e-80 295.8
Cone8ag1487 . 21 665 Strubbelig Receptor Gene Family AT2G20850 50.3 9.1e-134 474.9
Cone19ag0495 . 2 741 Strubbelig Receptor Gene Family AT5G06820 52.6 1.3e-184 644.0
Cone8ag1487 . 31 789 Strubbelig Receptor Gene Family AT4G03390 61.9 2.4e-205 713.0
Cone12ag1436 . 31 777 Strubbelig Receptor Gene Family AT4G03390 60.9 6.9e-205 711.4
Cone6ag1064 . 28 731 Strubbelig Receptor Gene Family AT4G03390 53.4 3.7e-166 582.8
Cone9ag1056 . 28 731 Strubbelig Receptor Gene Family AT4G03390 52.8 5.9e-164 575.5
Cone4ag0869 . 19 679 Strubbelig Receptor Gene Family AT3G13065 55.8 1.3e-149 527.7
Cone4ag0853 . 12 690 Strubbelig Receptor Gene Family AT3G13065 50.2 3.9e-111 399.8
Cone17ag0031 . 23 668 Strubbelig Receptor Gene Family AT3G13065 51.0 3.9e-111 399.8
Cone6ag1064 . 448 731 Strubbelig Receptor Gene Family AT3G13065 52.3 1.6e-80 298.1
Cone9ag1056 . 448 731 Strubbelig Receptor Gene Family AT3G13065 50.9 2.6e-78 290.8
Cone4ag0869 . 21 700 Strubbelig Receptor Gene Family AT1G78980 63.8 1.1e-193 674.1
Cone7ag0827 . 30 667 Strubbelig Receptor Gene Family AT1G78980 50.1 6.1e-136 482.3
Cone4ag0853 . 30 695 Strubbelig Receptor Gene Family AT1G78980 52.6 2.6e-134 476.9
Cone17ag0031 . 25 671 Strubbelig Receptor Gene Family AT1G78980 51.8 4.7e-128 456.1
Cone4ag0853 . 3 719 Strubbelig Receptor Gene Family AT1G53730 64.8 2.1e-208 723.0
Cone7ag0827 . 1 691 Strubbelig Receptor Gene Family AT1G53730 61.2 4.7e-208 721.8
Cone17ag0031 . 5 668 Strubbelig Receptor Gene Family AT1G53730 57.4 7.2e-164 575.1
Cone1ag0021 . 1 659 Strubbelig Receptor Gene Family AT1G53730 52.5 1.4e-156 550.8
Cone4ag0869 . 11 699 Strubbelig Receptor Gene Family AT1G53730 51.0 8.8e-154 541.6
Cone7ag0827 . 10 679 Strubbelig Receptor Gene Family AT3G14350 59.6 4.6e-184 642.1
Cone4ag0853 . 13 707 Strubbelig Receptor Gene Family AT3G14350 60.2 6.6e-183 638.3
Cone20ag1372 . 25 168 Strubbelig Receptor Gene Family AT3G14350 69.4 8.4e-45 179.5
Cone1ag0021 . 103 674 Strubbelig Receptor Gene Family AT4G22130 63.5 8.0e-187 651.0
Cone5ag1846 . 150 746 Strubbelig Receptor Gene Family AT4G22130 60.4 1.6e-179 626.7
Cone7ag0827 . 367 682 Strubbelig Receptor Gene Family AT4G22130 65.3 5.1e-117 419.1
Cone4ag0853 . 395 710 Strubbelig Receptor Gene Family AT4G22130 65.3 1.9e-116 417.2
Cone17ag0031 . 329 668 Strubbelig Receptor Gene Family AT4G22130 59.2 7.9e-110 395.2
Cone8ag1487 . 482 783 Strubbelig Receptor Gene Family AT4G22130 61.7 2.4e-106 383.6
Cone12ag1436 . 468 769 Strubbelig Receptor Gene Family AT4G22130 61.1 1.3e-104 377.9
Cone4ag0869 . 367 700 Strubbelig Receptor Gene Family AT4G22130 53.5 6.7e-101 365.5
Cone6ag1064 . 448 731 Strubbelig Receptor Gene Family AT4G22130 61.0 5.3e-98 355.9
Cone9ag1056 . 448 731 Strubbelig Receptor Gene Family AT4G22130 59.6 1.9e-95 347.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003611 2 1 2 2 2 1 2 1 1 1 1 1 2 1 0 2 1 1 2 1 1 1 1 0 1 1 1 1 2 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81989 None None None None Cone PK