Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1436 ATGGGGCGGAAGAGATCTGGTTTGAGGAAGAAGAATCTGGGGATCTACGCACAGTTTTTAGCGGGCTTCGTGTTGATCTGTGCTGTACAAGTTTCGCTTGGAATTACTAATCCCAATGACTTTACTGCCATTAGTAACTTGTATACTTCGTGGGGTTCCCCTGTTCTTCCTGGCTGGGGTGTTGGACAAGACCCGTGTGGTGATAAGTGGCAAGGCGTTGAATGTAATAACTCCGTCATTATAAGAATAGTTATTAATGCTGCTACTTTGGGAGGAGAGTTGAGTGATAGCTTGGGAATGTTCACTTCTATCCAATCAATAGACCTCAGCAACAATAACATTGGGGGAAGTATTCCATCGAACTTGCCTGTTACTATGCAAAACCTTTTTCTTTCAGCTAATCAATTTACTGGAAGCATCCCAAGTTCCTTATCATCTTTGACTCAGCTAGCAGCCATGTCACTGAATGACAATCACTTAAGTGGAGAAATACCAGATTCTTTTGCAGCTCTTACAGGATTGGTCAACTTGGACTTATCCAGCAACAATTTTAGCGGTCCACTGCCTTCCTCTCTACAAGATTTAGTGGTTTTGACCACTCTGCGTTTGCAGAATAATCAGCTTTTGGGGACCCTCAACGTTTTACAGGATCTTCCAATAAAAGACTTGAATGTAGAGAATAATCTCTTCTCTGGACCCATACCTGAAAAGTTACTGAATATCCCAACTTTTAGAAAGGATGGAAACCCATGGAATTCTACTGTTTCTCCAGCATCTCCACCTTCACTCTCATCAAAGCCTTCACAGGCGGGTCCATCACCATCATTTTTTCCAACACCACCTTCTGGGAAGTCACCCGCAAAACAGTCTGATGGACCATCTGCCTCAAAGGAATCAAATGCTGGAAAAAAGGGTAAATCTACCAAAAGGGTAGTTTGGATATCAATTGCAGGAGTGTTGTCATTTATTATTTTGGCTCTAGCACTTGTGCTTTTTATGCCAAGGTGTATGAAAAGGAGCAGAAGGGCCGACGCAATTTCCAAGCGGCATCAAATAGGTGCTTACAGGGGTGACAGAGAGAGTCCCAGGCACAGTCCCTTGGTCCAGCCAACCAGTGAAACACATAAAGTTCCAATACCTAAGGAGGATGTTCCAGTGCCAAAGGAGGAACATCAAACAGAGACTCAAAGAGTGGGGGCAATACGAAAGCCACAGAAAGAGAAAGAGAGAGATATGCAAAGAATGGGCATAAGACCAAAACAAGATGATCATGAGATAGACATTAGTGCAGATGATGTTCATCTGATGCCTCCTCCTCCACCACCACCTCCTGTTCAGAAGGTCATCGTTGAACCTATTGTTCCAGCTGAAGTTTCTCCTGTAAGGCCTTCCAGCAGAACAATCAATACCCCTACTTTTGCAAAGTCCTTCACCATTGCATCCCTTCAGCAATATACAAATAGCTTTTCACAAGAGAATCTCATTGGAGTCGGAATGCTGGGTAGTGTTTATAGGGCACGGCTTCCTAATGGAAAGCTGCTTGCGGTGAAGAAACTGGACAAAAGAGCTTCCAGTGTGCAGAAGAACAATGAATTCCTTGAGTTAGTGAACGACATTGATAAAATCCGACATGCAAATGTCGTTGAACTTGTGGGCTGTTGTGCGGAGCATGATCAAAGGCTTCTGATTTACGAGTACTGCATTAATGGAACTCTACAGGACGCTCTACATTCAGATGAGGAATTCAAAAAGAAACTCTCTTGGAATGCCCGTGTTCGAATGGCCCTTGGGGCTGCTAGAGCACTAGAGTACTTGCATGAGGTCTGTCATCCGCCTGTTATACACAGGAACTTCAAGTCTGCAAATGTTCTTCTTGATGATGAACTCTCTGTGCATGTCTCTGATTGTGGTTTAGCTCGATTGATATCATCTGGTTCTGTTAGTCAGTTATCAGGGCATCTACTATCAATGTATGGCTATGGGGCTCCAGAATTTGAATCCGGCATTTATACGCTTCAAAGTGACGGTTATAGCTTTGGGGTTGTCATGTTAGAGCTTTTGACCGGCCGAATGTCCTATGACAAGGCAAAGACTAGAGGAGAGCAATTTCTGGTGAGATGGGCAATCCCACAGCTTCATGACATTGATGCATTATCAAGAATGGTTGATCCTTCTCTCCATGGTCAATATCCAGCAAAATCCTTGTCGCACTTTGCCGATATCATATCTCGATGTGTTCAGCCGGAGCCTGAATTCAGGCCACTCATGTCAGAAGTTGTACAGGACTTATTTGACATGCTAAGGAGAGAGCCACGTGGCAGTGGATCAAGCCAGGATTGA 2340 44.06 MGRKRSGLRKKNLGIYAQFLAGFVLICAVQVSLGITNPNDFTAISNLYTSWGSPVLPGWGVGQDPCGDKWQGVECNNSVIIRIVINAATLGGELSDSLGMFTSIQSIDLSNNNIGGSIPSNLPVTMQNLFLSANQFTGSIPSSLSSLTQLAAMSLNDNHLSGEIPDSFAALTGLVNLDLSSNNFSGPLPSSLQDLVVLTTLRLQNNQLLGTLNVLQDLPIKDLNVENNLFSGPIPEKLLNIPTFRKDGNPWNSTVSPASPPSLSSKPSQAGPSPSFFPTPPSGKSPAKQSDGPSASKESNAGKKGKSTKRVVWISIAGVLSFIILALALVLFMPRCMKRSRRADAISKRHQIGAYRGDRESPRHSPLVQPTSETHKVPIPKEDVPVPKEEHQTETQRVGAIRKPQKEKERDMQRMGIRPKQDDHEIDISADDVHLMPPPPPPPPVQKVIVEPIVPAEVSPVRPSSRTINTPTFAKSFTIASLQQYTNSFSQENLIGVGMLGSVYRARLPNGKLLAVKKLDKRASSVQKNNEFLELVNDIDKIRHANVVELVGCCAEHDQRLLIYEYCINGTLQDALHSDEEFKKKLSWNARVRMALGAARALEYLHEVCHPPVIHRNFKSANVLLDDELSVHVSDCGLARLISSGSVSQLSGHLLSMYGYGAPEFESGIYTLQSDGYSFGVVMLELLTGRMSYDKAKTRGEQFLVRWAIPQLHDIDALSRMVDPSLHGQYPAKSLSHFADIISRCVQPEPEFRPLMSEVVQDLFDMLRREPRGSGSSQD 779
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10403858 10408388 - Conep12aG0148800.1 Cone12ag1436 450280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1436 779 MobiDBLite consensus disorder prediction 376 419 - -
Cone12ag1436 779 SUPERFAMILY L domain-like 55 243 - -
Cone12ag1436 779 MobiDBLite consensus disorder prediction 282 301 - -
Cone12ag1436 779 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 456 566 - -
Cone12ag1436 779 Gene3D Transferase(Phosphotransferase) domain 1 568 770 - -
Cone12ag1436 779 MobiDBLite consensus disorder prediction 250 307 - -
Cone12ag1436 779 SUPERFAMILY Protein kinase-like (PK-like) 463 764 IPR011009 -
Cone12ag1436 779 MobiDBLite consensus disorder prediction 250 272 - -
Cone12ag1436 779 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 37 262 - -
Cone12ag1436 779 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 567 776 - -
Cone12ag1436 779 Gene3D Ribonuclease Inhibitor 38 264 IPR032675 -
Cone12ag1436 779 Pfam Protein tyrosine and serine/threonine kinase 492 763 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone12ag1436 779 Pfam Leucine Rich Repeat 174 195 IPR001611 GO:0005515(InterPro)
Cone12ag1436 779 Pfam Leucine Rich Repeat 103 122 IPR001611 GO:0005515(InterPro)
Cone12ag1436 779 Pfam Leucine Rich Repeat 127 147 IPR001611 GO:0005515(InterPro)
Cone12ag1436 779 MobiDBLite consensus disorder prediction 342 363 - -
Cone12ag1436 779 ProSiteProfiles Protein kinase domain profile. 489 765 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag1436 779 PANTHER LEUCINE RICH REPEAT KINASE 2 84 763 IPR051420 -
Cone12ag1436 779 MobiDBLite consensus disorder prediction 342 419 - -
Cone12ag1436 779 Gene3D Phosphorylase Kinase; domain 1 459 566 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1436 Cone-Chr12:10403858 Cone5ag1846 Cone-Chr5:12958518 3.21E-125 dispersed
Cone12ag1436 Cone-Chr12:10403858 Cone6ag1064 Cone-Chr6:6225237 3.80E-185 wgd
Cone12ag1436 Cone-Chr12:10403858 Cone8ag1487 Cone-Chr8:11333661 0 wgd
Cone12ag1436 Cone-Chr12:10403858 Cone9ag1056 Cone-Chr9:5752906 1.91E-182 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81989 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1436 - - - 0.0