Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1441 ATGGGTGCTTGTGTCTCTACTAGTCATAAGAATGCTTTCAAGAATGGGAGCAATGGAGAAAAAGCTCCCTCATTCTCAGCTCTTAAACTTTACGCGAGAAAGAAAACAAAGAAAACCTTCTCCAATCACATTGTTTCTCTTAAGAATTTACCGTCCATACCCAATCGGATTTTTATGAATGGAAAGAGTCGAACTTCGTGTATATTCACACAGCAGGGTCGGAAGGGCATAAACCAGGATGCAATGATTGTATGGGAAGATTTCATGTCAGATGCGACATTTTGCGGTGTATTTGATGGTCATGGACCCCATGGGCACCTTGTTGCGAGAAAAGTGAGGGATGCATTGCCTATTAAGCTTCTCTCTTCACTGCATTCTTCTCAGTCAAAGCAAAATGGGTCCGGTAATACCTGTTTCAAAAAGAATCTGAAGAACTCTGATTCTGGAGATGGAGATTCCGGGAAGGATAGCTTGGTTGAGGATGAAATGAATTCTTTGTGGCGTGAGGCTTTCTTGAAATCGTACAAGGCTATGGATAAAGAGCTCAGATCACATCCTAATTTGGGCTGCTTTTGTAGTGGTAGTACTGCTGTAACTATAGTCAAACAGGGTTCAAATCTTTTTATGGGATATATAGGGGATTCTCGAGCAATCCTTGGATCTAAGGACAGCAATGATTCTATGGTCGCAACGCAATTGACTGTTGATTTAAAACCTGATTTACCAAGAGAAGCTGAAAGGATAAAACGGTGTAAAGGTAGAGTCTTTGCCCTACAAGATGAGCCGGAAGTGCCTAGAGTATGGTTGCCCTTTGATGATGCACCTGGATTAGCGATGGCTCGGGCATTTGGGGATTTCTGTTTGAAGGATTATGGTGTGATCTCTGTACCCGAGTTCTCGCACCGGATTCTTACAGACAGAGATCAATTCATAGTTCTTGCCTCAGATGGGGTTTGGGATGTATTAAGCAATGAAGAGGTGGTTGAGATAGTCTCATTGGCTTCAATCCGATCCTCAGCGGCTAGGACCGTGGTTGAGTCAGCGGCTCGTGAGTGGAACCTCAAGTACCCAACTTCTAAAATGGATGATTGCGCAGTGGTTTGCTTGTTTTTGGATGGGAAAATGGACTCCGAATCTGATTATGAAGAACAATGTTACTCCTCTGCAATTCTACAACTTGATCATTCTGCTAATGCTGTAGAAGAAGAAGATGATGGGCAGAAGTCTGAGCCGTCTTTGCAGAGGAATAACACCGTTAGATCATCTGAAGAAAATAAGAGTACTTTTGCCCGAGTACAGGTTGAAGTTGAAGGTCATGATGAAGAAACTGTATTAGGTGAAGATCAGAGCTATTCGGGTTTGGAAGGCATTACGAGAGTGAATTCCCTCGTTCAACTTCCCAGATTCTCAGAGGAAAGGGTCAATAATTCCCCTCAAGTTTCATGA 1446 42.95 MGACVSTSHKNAFKNGSNGEKAPSFSALKLYARKKTKKTFSNHIVSLKNLPSIPNRIFMNGKSRTSCIFTQQGRKGINQDAMIVWEDFMSDATFCGVFDGHGPHGHLVARKVRDALPIKLLSSLHSSQSKQNGSGNTCFKKNLKNSDSGDGDSGKDSLVEDEMNSLWREAFLKSYKAMDKELRSHPNLGCFCSGSTAVTIVKQGSNLFMGYIGDSRAILGSKDSNDSMVATQLTVDLKPDLPREAERIKRCKGRVFALQDEPEVPRVWLPFDDAPGLAMARAFGDFCLKDYGVISVPEFSHRILTDRDQFIVLASDGVWDVLSNEEVVEIVSLASIRSSAARTVVESAAREWNLKYPTSKMDDCAVVCLFLDGKMDSESDYEEQCYSSAILQLDHSANAVEEEDDGQKSEPSLQRNNTVRSSEENKSTFARVQVEVEGHDEETVLGEDQSYSGLEGITRVNSLVQLPRFSEERVNNSPQVS 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10420790 10422583 - Conep12aG0149300.1 Cone12ag1441 450285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1441 481 FunFam probable protein phosphatase 2C 52 56 374 - -
Cone12ag1441 481 ProSiteProfiles PPM-type phosphatase domain profile. 65 371 IPR001932 -
Cone12ag1441 481 MobiDBLite consensus disorder prediction 126 157 - -
Cone12ag1441 481 MobiDBLite consensus disorder prediction 399 429 - -
Cone12ag1441 481 SMART PP2C_4 49 369 IPR001932 -
Cone12ag1441 481 MobiDBLite consensus disorder prediction 411 429 - -
Cone12ag1441 481 PANTHER PROTEIN PHOSPHATASE 66 370 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cone12ag1441 481 CDD PP2Cc 71 371 IPR001932 -
Cone12ag1441 481 Pfam Protein phosphatase 2C 166 335 IPR001932 -
Cone12ag1441 481 MobiDBLite consensus disorder prediction 126 144 - -
Cone12ag1441 481 Gene3D - 59 379 IPR036457 -
Cone12ag1441 481 SUPERFAMILY PP2C-like 56 373 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1441 Cone-Chr12:10420790 Cone5ag0943 Cone-Chr5:4036801 1.91E-139 dispersed
Cone10ag1329 Cone-Chr10:10363256 Cone12ag1441 Cone-Chr12:10420790 1.02E-240 wgd
Cone12ag1441 Cone-Chr12:10420790 Cone3ag1401 Cone-Chr3:32875962 1.39E-245 wgd
Cone12ag1441 Cone-Chr12:10420790 Cone8ag1481 Cone-Chr8:11312853 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1441 - - - 0.0