Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1452 ATGCACCTCCGTTGTTCCTCTGTCAGCCTTTTGCTCATCATGGCGACCATGGCGAGCTCGCTCGCAAATGCGACCTTAACTCCACTCCAACACGCCGTTTCCGACAAGAACTGGCACCCTGCCACCGCCACCTGGTACGGAGATCCCGAAGGGGACGGCAGCGACGGTGGAGCCTGTGGATACGGAGACATGGTGGACGTGCGGCCGTTGAAGGCTCGGGTGGGTGCGGTGAGTCCGGTGCTGTTCAAGAATGGCGAAGGGTGCGGCGCGTGCTACAAAGTCAAATGCTTGGACCAATCCATCTGCTCGAGACGGGCCGTGACTGTGATTATCACCGACGAGTGTCCGGGCGGGTACTGCTCTAACGGGCGGACCCACTTTGACCTCAGCGGGGCGGCTTTTGGGCGCATGGCTGTTTCCGGCGAAAACGGTCAACTCAGAAACCGAGGAGAGATCCCAGTCATTTACCGAAGGACTCCATGTAAGTATCCTGGGAAGAACATTGCGTTCCATGTGAATGAAGGTTCGACCGATTATTGGCTCTCTCTCTTGGTTGAGTTCGAGGATGGAGATGGAGATGTCGGCTCAATGCATATAAGAGATGCAAGGGCTAGTGAGTGGGTGGAGATGAATCATCTGTGGGGTGCAAATTGGTGCATAATTGGTGGGCCACTAAAGGGCCCATTTTCAGTGAAGTTAACGACTTTATCAACGGCCAGAACTCTGTCTGCAAGAGATGTGATTCCAGGGAATTGGTCTCCAAAGGCCACTTACACTTCCCGCCTGAATTTCTTCTCCTAA 801 54.56 MHLRCSSVSLLLIMATMASSLANATLTPLQHAVSDKNWHPATATWYGDPEGDGSDGGACGYGDMVDVRPLKARVGAVSPVLFKNGEGCGACYKVKCLDQSICSRRAVTVIITDECPGGYCSNGRTHFDLSGAAFGRMAVSGENGQLRNRGEIPVIYRRTPCKYPGKNIAFHVNEGSTDYWLSLLVEFEDGDGDVGSMHIRDARASEWVEMNHLWGANWCIIGGPLKGPFSVKLTTLSTARTLSARDVIPGNWSPKATYTSRLNFFS 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10458242 10460175 - Conep12aG0150400.1 Cone12ag1452 450296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1452 266 Gene3D - 162 261 IPR036749 -
Cone12ag1452 266 SMART dpbb_1 74 156 IPR007112 -
Cone12ag1452 266 Pfam Lytic transglycolase 76 155 IPR009009 -
Cone12ag1452 266 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 179 260 IPR007117 -
Cone12ag1452 266 PRINTS Expansin/Lol pI family signature 149 165 IPR007118 GO:0005576(InterPro)
Cone12ag1452 266 PRINTS Expansin/Lol pI family signature 55 73 IPR007118 GO:0005576(InterPro)
Cone12ag1452 266 PRINTS Expansin/Lol pI family signature 246 260 IPR007118 GO:0005576(InterPro)
Cone12ag1452 266 PRINTS Expansin/Lol pI family signature 37 52 IPR007118 GO:0005576(InterPro)
Cone12ag1452 266 PRINTS Expansin/Lol pI family signature 78 96 IPR007118 GO:0005576(InterPro)
Cone12ag1452 266 PRINTS Expansin/Lol pI family signature 207 221 IPR007118 GO:0005576(InterPro)
Cone12ag1452 266 Pfam Expansin C-terminal domain 168 249 IPR007117 -
Cone12ag1452 266 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 56 166 IPR007112 -
Cone12ag1452 266 Gene3D - 22 161 IPR036908 -
Cone12ag1452 266 FunFam Beta-expansin 3 163 265 - -
Cone12ag1452 266 PRINTS Major pollen allergen Lol pI signature 76 87 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cone12ag1452 266 PRINTS Major pollen allergen Lol pI signature 138 153 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cone12ag1452 266 PRINTS Major pollen allergen Lol pI signature 236 253 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cone12ag1452 266 PRINTS Major pollen allergen Lol pI signature 170 185 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cone12ag1452 266 PRINTS Major pollen allergen Lol pI signature 186 201 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cone12ag1452 266 PRINTS Major pollen allergen Lol pI signature 116 131 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cone12ag1452 266 FunFam Expansin B3 24 162 - -
Cone12ag1452 266 SUPERFAMILY PHL pollen allergen 166 260 IPR036749 -
Cone12ag1452 266 CDD DPBB_EXPB_N 38 161 - -
Cone12ag1452 266 PANTHER EXPANSIN-B3 17 264 - GO:0006949(PANTHER)|GO:0009506(PANTHER)
Cone12ag1452 266 SUPERFAMILY Barwin-like endoglucanases 26 165 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1452 Cone-Chr12:10458242 Cone14ag0518 Cone-Chr14:2595107 7.08E-82 dispersed
Cone12ag1452 Cone-Chr12:10458242 Cone15ag1061 Cone-Chr15:8779097 3.70E-38 wgd
Cone12ag1452 Cone-Chr12:10458242 Cone3ag1410 Cone-Chr3:32948120 2.13E-125 wgd
Cone12ag1452 Cone-Chr12:10458242 Cone8ag1502 Cone-Chr8:11379574 8.12E-183 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1452 K20628 - rcu:8262087 442.965