Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1456 ATGGACATAGAAGAAGAGTACGTCGAAGATACTATATCGCCAAATGACGGCATGAAAGACTCCAAAGATGATGATCCATCGGGTGGTTTTGATTGTAACATATGCCTCGAGCCGGCTGAAGAACCGGTAGTAACTCTATGTGGTCACCTCTACTGCTGGCCATGTATCTACAAATGGCTTACTTGCCTGAACATATCCTCCGAAGAACAACACAAGCAATGCCAACAATGTCCTGTCTGCAAATCCCAAGTTTCTCGCGCGACATTAGTCCCTCTCTACGGCAGAGGTCAGACCAAAAAACCGTCAAAAGGAAACGCTCCTGATCTCGGAATCATCATTCCACGTAGGTCCGTTGACCCTACTTGTGGGGTTTCGAGTCCGATATCTCCAGACCTCGTCACTAGTCCTTACCGTAATCCACCACATCACTACTATTCTCGAGCCGGAAGTAGCAGGGCCCATGTCCTTCATGATGATCCAGCGATTGGAGTGTACGGGGACGTCTTTCATGCGAGGCTGTTCGGGAACAGCATAACAAATCTGTACGCCTATCCGAATTCGTACAGTCTCGTTGGTAGTACTAGTCCTAGGATTAGAAGGCACATGATGCTTCTCGATGAATCACTTAGCAGAATGTCCTTCTTTCTCTTCTGTTGCTTAGTCTTATGTCTTCTCTTCTTCTGA 684 47.08 MDIEEEYVEDTISPNDGMKDSKDDDPSGGFDCNICLEPAEEPVVTLCGHLYCWPCIYKWLTCLNISSEEQHKQCQQCPVCKSQVSRATLVPLYGRGQTKKPSKGNAPDLGIIIPRRSVDPTCGVSSPISPDLVTSPYRNPPHHYYSRAGSSRAHVLHDDPAIGVYGDVFHARLFGNSITNLYAYPNSYSLVGSTSPRIRRHMMLLDESLSRMSFFLFCCLVLCLLFF 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10470220 10470903 - Conep12aG0150800.1 Cone12ag1456 450300

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1456 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 104 IPR013083 -
Cone12ag1456 227 ProSiteProfiles Zinc finger RING-type profile. 32 81 IPR001841 -
Cone12ag1456 227 Pfam Zinc finger, C3HC4 type (RING finger) 32 80 IPR018957 GO:0046872(InterPro)
Cone12ag1456 227 CDD RING-HC_RNF5-like 30 81 - -
Cone12ag1456 227 ProSitePatterns Zinc finger RING-type signature. 47 56 IPR017907 -
Cone12ag1456 227 SMART ring_2 32 80 IPR001841 -
Cone12ag1456 227 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 19 222 IPR045103 GO:0005783(InterPro)|GO:0006511(PANTHER)|GO:0006511(InterPro)|GO:0044390(PANTHER)|GO:0061630(InterPro)|GO:0061630(PANTHER)|GO:0071712(PANTHER)
Cone12ag1456 227 SUPERFAMILY RING/U-box 25 93 - -
Cone12ag1456 227 MobiDBLite consensus disorder prediction 1 24 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1456 K10666 - - rcu:8262073 244.202
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1456 Cone-Chr12:10470220 Cone17ag1319 Cone-Chr17:9339349 1.11E-27 dispersed
Cone1ag0158 Cone-Chr1:883512 Cone12ag1456 Cone-Chr12:10470220 5.53E-52 wgd
Cone10ag1343 Cone-Chr10:10476717 Cone12ag1456 Cone-Chr12:10470220 3.30E-64 wgd
Cone12ag1456 Cone-Chr12:10470220 Cone15ag1060 Cone-Chr15:8775772 4.86E-46 wgd
Cone12ag1456 Cone-Chr12:10470220 Cone3ag1414 Cone-Chr3:32967377 3.88E-67 wgd
Cone12ag1456 Cone-Chr12:10470220 Cone5ag1713 Cone-Chr5:12194510 1.41E-48 wgd
Cone12ag1456 Cone-Chr12:10470220 Cone6ag0139 Cone-Chr6:682408 4.22E-32 wgd
Cone12ag1456 Cone-Chr12:10470220 Cone9ag0165 Cone-Chr9:727323 1.05E-51 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g241 . . Bda07g00293 . . Bpe02g01905 Bma10g00503 . . . . Cma09g00872 Car01g01030 Car09g00785 Sed06g0407 Cpe06g00695 Cpe02g00705 Bhi09g03405 Tan01g4405 Cmetu07g2305 . Hepe01g1379 Mch11g1077 . Cla11g01769 . . Cco11g1863 . . Cre11g2213 Cone3ag1414 Cone10ag1343 . Cone12ag1456 Lsi04g01328 Csa04g02351 Chy07g00084 . . . . . Bpe11g00486 Bpe03g00833 . Bma14g00232 . Cmo01g01258 Cmo09g00861 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006556 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 0 38