Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1466 ATGGAAAATATTAGCGTCTTGTACTATACTACTAATATAAAGAAGATGGGTTGTGCGTGTACAAAGTCCTCGGCAGTTGAAGATAGCCGGGGGGACAGCTCGAACGACAGATTCACATCGAGCAGACGGCTATCATCATCATTACAAAAGGCTCTCAGATTGGAATCATCAAGAAGACATGAAGACTTTAAGATTAGTTCACAAAGATTAGCACGAAGATTATATTTTGATGATACCAAGGTTTCCTTGCACGGCACGAAATTCCAAGGTCCAAACCGGGTCCATGACGATCGAAGCAGAAATCGCAGTTTGGAGACAGTTGTTAAGAAAAACGAGCATCTATTGACAGGAATGGTTATGCCGGAAAAGAAGAAGTTGGAGACAGTTGCTATAGACCATCGAGGTAAAGGGAGTGTCCCAAAGACTTTGGAAGGAGAACAAGTGGCAGCAGGGTGGCCTACATGGCTCTCTGCCGTTGCAGGCGAAGCATTAAAAGGATGGCTACCTCGTCCAGCTGACACTTTTGAGAAACTGGAAAAAATAGGCCAAGGAACTTACAGTAGCGTGTACAGGGCTCGTGATATGATTCATGATAAAATAGTCGCGCTAAAAAGGGTTCGTTTCGATAAGCTTGATGTGGAGAGTATCAAGTTTATGGCGAGGGAAATCCTTATATTGCGTAAACTCGACCATCCCAATGTGATAAAGCTGGAAGGCTTAATCACAGCACCAAGGTCTTGTAGCTTGTACCTCGTTTTCGAGTATATGGAACATGATCTTACCGGACTTGCCACAAATCCTAACATTAATCTCACAGAACCTCAGGTCAAATGTTTTATGCAACAACTTCTAAGAGGGCTTGATTACTGTCATAGCCATGGCGTTCTTCATCGCGACATAAAGGGATCGAATTTACTAATCAATAACGAAGGAATACTAAAGATAGCGGATTTTGGTTTAGCAAGTTTTTTCGATCCTCATATGAGTAATCAATTGACAAGCCGGGTAGTGACTCTTTGGTATAGGCCGCCCGAGCTTTTGCTTGGAGATTCCCGCTATGGAATTGCAGTTGACTTATGGAGTGCAGGTTGCATATTAGCAGAGTTATATACTGGCAAGCCTATCTTACCTGGAAAAACAGAGGTGGAACAATTGCATAAAATTTTCAAGCTTTGTGGCTCACCAACTGAGGATTATTGGAGAAAACTAGAATCACCTCATTCGAAAGCCTTCAAGCCCGCTCAGCCTTACAGCCGATGTGTTATGGAAACTTTTAAGGATTTACCGGCTGAGGTTATTGGGTTAGTGGATGCTTTGCTCTCTATAGATCCGGCATGTCGAGGAACTGCAGCTACCGCTCTCAAGAATAAGTTATTTACGACAAAGCCTCTTGCTTGTACTCCTTCGAGTTTACCTAAATATCCTCCGAGCAAAGAGATTGACACGAAAATGCGTGAAGAGGGAAGCGGAAGGCCGGAAAATGTTGGGACCAAGGACATGAAAGCGAAAATGGAAGGAAAACTAGCAAAAGAATCTCAGGCTAGTCTTGTTACTAAAGATCATGCTGAATTTCGCATGTCGATGCCGAGAAAACATGGGCAGGCCACCTCAAAGAGAATAAGTGGACTGTTTAATCCTCCTGGAGAGGAACCGGTGTCCGGATTTCTAGTTTTTCCAACTAAACAACCACGAGCGCCGAAAGAATTATCAAACAGAGCTAACCTGAAGACATATCATCCTATATCGACTGAGATAGAGCGGGCCCTTCAGAGCCATTAG 1779 43.51 MENISVLYYTTNIKKMGCACTKSSAVEDSRGDSSNDRFTSSRRLSSSLQKALRLESSRRHEDFKISSQRLARRLYFDDTKVSLHGTKFQGPNRVHDDRSRNRSLETVVKKNEHLLTGMVMPEKKKLETVAIDHRGKGSVPKTLEGEQVAAGWPTWLSAVAGEALKGWLPRPADTFEKLEKIGQGTYSSVYRARDMIHDKIVALKRVRFDKLDVESIKFMAREILILRKLDHPNVIKLEGLITAPRSCSLYLVFEYMEHDLTGLATNPNINLTEPQVKCFMQQLLRGLDYCHSHGVLHRDIKGSNLLINNEGILKIADFGLASFFDPHMSNQLTSRVVTLWYRPPELLLGDSRYGIAVDLWSAGCILAELYTGKPILPGKTEVEQLHKIFKLCGSPTEDYWRKLESPHSKAFKPAQPYSRCVMETFKDLPAEVIGLVDALLSIDPACRGTAATALKNKLFTTKPLACTPSSLPKYPPSKEIDTKMREEGSGRPENVGTKDMKAKMEGKLAKESQASLVTKDHAEFRMSMPRKHGQATSKRISGLFNPPGEEPVSGFLVFPTKQPRAPKELSNRANLKTYHPISTEIERALQSH 592
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10498908 10502154 + Conep12aG0151800.1 Cone12ag1466 450310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1466 592 SMART serkin_6 175 459 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag1466 592 Gene3D Transferase(Phosphotransferase) domain 1 258 495 - -
Cone12ag1466 592 ProSiteProfiles Protein kinase domain profile. 175 459 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag1466 592 SUPERFAMILY Protein kinase-like (PK-like) 169 463 IPR011009 -
Cone12ag1466 592 MobiDBLite consensus disorder prediction 470 500 - -
Cone12ag1466 592 FunFam probable serine/threonine-protein kinase At1g54610 162 257 - -
Cone12ag1466 592 Pfam Protein kinase domain 175 459 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag1466 592 Gene3D Phosphorylase Kinase; domain 1 162 257 - -
Cone12ag1466 592 PANTHER CELL DIVISION PROTEIN KINASE 174 459 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Cone12ag1466 592 FunFam probable serine/threonine-protein kinase At1g54610 258 499 - -
Cone12ag1466 592 CDD STKc_CDK9_like 175 459 - -
Cone12ag1466 592 ProSitePatterns Protein kinases ATP-binding region signature. 181 204 IPR017441 GO:0005524(InterPro)
Cone12ag1466 592 MobiDBLite consensus disorder prediction 478 500 - -
Cone12ag1466 592 ProSitePatterns Serine/Threonine protein kinases active-site signature. 295 307 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1466 Cone-Chr12:10498908 Cone3ag1421 Cone-Chr3:33002881 2.37E-219 dispersed
Cone10ag1351 Cone-Chr10:10524409 Cone12ag1466 Cone-Chr12:10498908 3.66E-220 wgd
Cone12ag1466 Cone-Chr12:10498908 Cone14ag1063 Cone-Chr14:8962512 1.25E-199 wgd
Cone12ag1466 Cone-Chr12:10498908 Cone3ag1420 Cone-Chr3:32999063 2.82E-184 wgd
Cone12ag1466 Cone-Chr12:10498908 Cone6ag0146 Cone-Chr6:740829 1.85E-205 wgd
Cone12ag1466 Cone-Chr12:10498908 Cone8ag1512 Cone-Chr8:11426498 0 wgd
Cone12ag1466 Cone-Chr12:10498908 Cone9ag0171 Cone-Chr9:760275 1.46E-207 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81990 PF00085 Thioredoxin 5.20E-07 CL0172 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1466 - - - 0.0