Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1470 ATGGTTATGTCTAAGAGATTTCTATCTGTGGCATCATTCTTATTGATGTTACTGTTTCTATTGAGCTCATCTGAAGCTTACCAGTTCAGGGTAGGTGGCAAAAATGGTTGGGTTTTGAACCCCTCTGAGAGTTACTCTCACTGGACTCAGAGAAACAGATTCCAAGTCAACGACACTCTCTTTTTCAAGTACAAACGTGGATCCGATTCGGTACTAGTTGTAACAAAGAACGATTACGACACATGCAATACCAAGAATCCTCTGCTGTCCTTAACAGAGGGCGACTCTGTTTTCAAGTTCGACCGGTCCGGTCCGGTTTTCTTCATAAGTGGGAATTCTCACAATTGCTGGAATGGTCAGAAACTCATTGTTGTGGTTTTAGCTGTGAGGAGCAAACCCCGTATTACTCCCCATTCCCCGCCTCCTTCTCCACCATCAATTTCTTTGGCGCCAACTCCAAGTACTGCACTGGGCCCGGAAGCTGACTCACCTGATTCGCATCGCTCCGGCTCGAGTCCTCCTTCAGACTTGAACACTCCGGCCCCAGCTCCGAAGAAAAACACGGGTTCACGTGCCGGTTTCTTTAGCAGTTCAATTGGGTTGGTTTTGGTTATTTGTAGTACTCTTGTCTTAGGCAGCAGCTTTATGTATATGGGGGTGGTGTGA 666 46.7 MVMSKRFLSVASFLLMLLFLLSSSEAYQFRVGGKNGWVLNPSESYSHWTQRNRFQVNDTLFFKYKRGSDSVLVVTKNDYDTCNTKNPLLSLTEGDSVFKFDRSGPVFFISGNSHNCWNGQKLIVVVLAVRSKPRITPHSPPPSPPSISLAPTPSTALGPEADSPDSHRSGSSPPSDLNTPAPAPKKNTGSRAGFFSSSIGLVLVICSTLVLGSSFMYMGVV 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10517081 10517846 - Conep12aG0152200.1 Cone12ag1470 450314

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1470 221 PANTHER BLUE COPPER PROTEIN 16 148 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
Cone12ag1470 221 Gene3D - 25 131 IPR008972 -
Cone12ag1470 221 Pfam Plastocyanin-like domain 37 120 IPR003245 GO:0009055(InterPro)
Cone12ag1470 221 CDD OsENODL1_like 27 127 IPR041846 -
Cone12ag1470 221 MobiDBLite consensus disorder prediction 165 189 - -
Cone12ag1470 221 ProSiteProfiles Phytocyanin domain profile. 27 128 IPR003245 GO:0009055(InterPro)
Cone12ag1470 221 MobiDBLite consensus disorder prediction 135 149 - -
Cone12ag1470 221 MobiDBLite consensus disorder prediction 134 189 - -
Cone12ag1470 221 FunFam Early nodulin-like protein 1 26 131 - -
Cone12ag1470 221 SUPERFAMILY Cupredoxins 26 127 IPR008972 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1470 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1470 Cone-Chr12:10517081 Cone2ag0224 Cone-Chr2:1185602 4.64E-16 dispersed
Cone17ag0150 Cone-Chr17:756841 Cone12ag1470 Cone-Chr12:10517081 1.69E-24 transposed
Cone12ag1470 Cone-Chr12:10517081 Cone6ag0153 Cone-Chr6:768003 1.16E-41 wgd
Cone12ag1470 Cone-Chr12:10517081 Cone9ag0178 Cone-Chr9:788605 3.08E-45 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g283 Blo02g00069 . Bda06g00300 . . . . . . . Cma02g00095 . Car02g00081 . . . . . . . . . . . Cla02g01737 Cam02g1829 Cec02g1851 Cco02g1894 Clacu02g1809 Cmu02g1757 Cre02g2081 . . . Cone12ag1470 Lsi10g01609 . Chy11g01127 . . . . . Bpe14g00646 Bpe07g00545 Bma02g01382 Bma12g00729 Sed01g0171 Cmo02g00095 . . . . . . Cpe05g01502 Bhi10g01119 Tan05g0755 Cmetu11g0979 . Hepe08g0550 . . . . . . . . . . Csa06g01085 . Cme11g01216
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone12ag1470 . 12 143 Phytocyanin Superfamily AT5G53870 54.5 1.7e-36 151.0
Cone6ag0153 . 11 136 Phytocyanin Superfamily AT4G27520 54.8 2.8e-36 150.2
Cone7ag0492 . 34 153 Phytocyanin Superfamily AT3G01070 62.8 3.5e-37 152.1
Cone4ag0517 . 34 132 Phytocyanin Superfamily AT3G01070 69.0 6.0e-37 151.4
Cone20ag0319 . 13 172 Phytocyanin Superfamily AT2G25060 54.9 5.1e-42 168.3
Cone17ag0978 . 12 168 Phytocyanin Superfamily AT2G25060 51.5 1.4e-39 160.2
Cone7ag0492 . 27 181 Phytocyanin Superfamily AT5G15350 58.2 4.8e-50 194.9
Cone4ag0517 . 13 149 Phytocyanin Superfamily AT5G15350 58.4 7.2e-46 181.0
Cone20ag0319 . 17 172 Phytocyanin Superfamily AT4G31840 53.5 8.5e-42 167.5
Cone17ag0978 . 16 170 Phytocyanin Superfamily AT4G31840 52.3 6.1e-40 161.4
Cone12ag1470 . 12 143 Phytocyanin Superfamily AT5G53870 54.5 1.7e-36 151.0
Cone6ag0153 . 11 136 Phytocyanin Superfamily AT4G27520 54.8 2.8e-36 150.2
Cone8ag0534 . 30 170 Phytocyanin Superfamily AT1G64640 60.1 1.5e-39 160.2
Cone20ag0319 . 13 172 Phytocyanin Superfamily AT2G25060 54.9 5.1e-42 168.3
Cone17ag0978 . 12 168 Phytocyanin Superfamily AT2G25060 51.5 1.4e-39 160.2
Cone20ag0319 . 17 172 Phytocyanin Superfamily AT4G31840 53.5 8.5e-42 167.5
Cone17ag0978 . 16 170 Phytocyanin Superfamily AT4G31840 52.3 6.1e-40 161.4
Cone7ag0492 . 34 153 Phytocyanin Superfamily AT3G01070 62.8 3.5e-37 152.1
Cone4ag0517 . 34 132 Phytocyanin Superfamily AT3G01070 69.0 6.0e-37 151.4
Cone7ag0492 . 27 181 Phytocyanin Superfamily AT5G15350 58.2 4.8e-50 194.9
Cone4ag0517 . 13 149 Phytocyanin Superfamily AT5G15350 58.4 7.2e-46 181.0
Cone5ag1429 . 1 225 Phytocyanin Superfamily AT1G08500 54.4 7.8e-64 241.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002701 2 2 1 2 4 1 2 2 1 2 2 2 2 2 2 2 1 1 2 2 2 2 1 2 2 2 2 1 2 1 54