Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1470 ATGGTTATGTCTAAGAGATTTCTATCTGTGGCATCATTCTTATTGATGTTACTGTTTCTATTGAGCTCATCTGAAGCTTACCAGTTCAGGGTAGGTGGCAAAAATGGTTGGGTTTTGAACCCCTCTGAGAGTTACTCTCACTGGACTCAGAGAAACAGATTCCAAGTCAACGACACTCTCTTTTTCAAGTACAAACGTGGATCCGATTCGGTACTAGTTGTAACAAAGAACGATTACGACACATGCAATACCAAGAATCCTCTGCTGTCCTTAACAGAGGGCGACTCTGTTTTCAAGTTCGACCGGTCCGGTCCGGTTTTCTTCATAAGTGGGAATTCTCACAATTGCTGGAATGGTCAGAAACTCATTGTTGTGGTTTTAGCTGTGAGGAGCAAACCCCGTATTACTCCCCATTCCCCGCCTCCTTCTCCACCATCAATTTCTTTGGCGCCAACTCCAAGTACTGCACTGGGCCCGGAAGCTGACTCACCTGATTCGCATCGCTCCGGCTCGAGTCCTCCTTCAGACTTGAACACTCCGGCCCCAGCTCCGAAGAAAAACACGGGTTCACGTGCCGGTTTCTTTAGCAGTTCAATTGGGTTGGTTTTGGTTATTTGTAGTACTCTTGTCTTAGGCAGCAGCTTTATGTATATGGGGGTGGTGTGA 666 46.7 MVMSKRFLSVASFLLMLLFLLSSSEAYQFRVGGKNGWVLNPSESYSHWTQRNRFQVNDTLFFKYKRGSDSVLVVTKNDYDTCNTKNPLLSLTEGDSVFKFDRSGPVFFISGNSHNCWNGQKLIVVVLAVRSKPRITPHSPPPSPPSISLAPTPSTALGPEADSPDSHRSGSSPPSDLNTPAPAPKKNTGSRAGFFSSSIGLVLVICSTLVLGSSFMYMGVV 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10517081 10517846 - Conep12aG0152200.1 Cone12ag1470 450314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1470 221 PANTHER BLUE COPPER PROTEIN 16 148 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
Cone12ag1470 221 Gene3D - 25 131 IPR008972 -
Cone12ag1470 221 Pfam Plastocyanin-like domain 37 120 IPR003245 GO:0009055(InterPro)
Cone12ag1470 221 CDD OsENODL1_like 27 127 IPR041846 -
Cone12ag1470 221 MobiDBLite consensus disorder prediction 165 189 - -
Cone12ag1470 221 ProSiteProfiles Phytocyanin domain profile. 27 128 IPR003245 GO:0009055(InterPro)
Cone12ag1470 221 MobiDBLite consensus disorder prediction 135 149 - -
Cone12ag1470 221 MobiDBLite consensus disorder prediction 134 189 - -
Cone12ag1470 221 FunFam Early nodulin-like protein 1 26 131 - -
Cone12ag1470 221 SUPERFAMILY Cupredoxins 26 127 IPR008972 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1470 Cone-Chr12:10517081 Cone2ag0224 Cone-Chr2:1185602 4.64E-16 dispersed
Cone17ag0150 Cone-Chr17:756841 Cone12ag1470 Cone-Chr12:10517081 1.69E-24 transposed
Cone12ag1470 Cone-Chr12:10517081 Cone6ag0153 Cone-Chr6:768003 1.16E-41 wgd
Cone12ag1470 Cone-Chr12:10517081 Cone9ag0178 Cone-Chr9:788605 3.08E-45 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1470 - - - 0.0