Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1471 ATGGCTTCGTTTTGGTTCTCTTCCTTCACCAACTATGCCCTTCTCTTCCTAAATCTATCTTTGTTATTCAACAATCTAGCCGCCAAGCACAGCGGTTTCACTGCCCGACACAGCCACCACCGTCACCATCACAATCACCGTCACCATATCACCACCCACTCCAACACATCAAACCCAAGACTCCACCAAGCTTTTCTTGCACTCCAAGCATGGAAACAAGTGATTTACTCGGACCCGAAAAACTTAACCACCAATTGGAAGGGCCCGTCTGTTTGTAACTACTTTGGAGTATATTGTGCACCTGCTCTTGACGATCCCACCATTCAAGTAGTTGCCGGAATCGACCTCAATCATGGCAACATAGCCGGATTCCTTCCCAATGAATTAGGCCTCTTGACCGATCTTGCTCTCCTTCATCTGAATAGCAACCGGTTTTGCGGCATCCTTCCAGAAACTCTATCCAACCTAACCGTCCTTTATGAGATCGATTTAAGCAACAACCGATTTGTGGGGCCTTTTCCGATGGTGGTCCTCTCTCTCCCGGAACTAAACTACCTTGATATCCGCTACAACGAATTCGAAGGGCCGTTACCTCCTCAGCTTTTCAACAAAAAGCTTGATGCAATATTCGTAAATAACAATCTCCTTACAAACGTAATTCCATCAAATTTTAGTGGAAGTTCAGCTTCTGTGATTGTATTTGCTCACAACAAGTTTAATGGAGGTCTTCCTCCAAGCATAGCTCGACTGGCCGACACTTTGGAGGAGCTTGTACTAATCAATTCTAGTTTGACAGGGTGTCTGCCTCAAGAGGTTGGGTTTCTTTACAAATTGAAAGTTCTGGATATAAGCTTTAACAAAGTGGCTGGTCCTATTCCTTATAGTTTAGCAGGATTAGCTCATTTGGAGCAATTGGATTTGGCCCATAATATGATGAGTGGGAATGTTTACGAAGGAGTTTGCACCCTTCCAAATTTGGCTAATTTCACATTCTCCTATAACTTCTTCTGTGAAGAGGACGGGATTTGTCGGAATCTGACTTCGAAAGGGGTTGTATACGAAGACCGTCGTAATTGTTTGCCGGAGAAGCCATTGCAGAGGAGTGAGAAGGAATGTAATGCTGTGCTGGATCATCCTGTTGACTGCTTAGATCATCCGTGGGAAGGTGGTGGGGAGCATGGTAGTTTGGGTGGTGTCACTAGAACTTTTGGCCCAAGTATTGCAGCAAGTCCCGTGTCGATGCCAATATGGTCGCCTTCTGCTGCTCCAAGCCACTCATGA 1281 45.43 MASFWFSSFTNYALLFLNLSLLFNNLAAKHSGFTARHSHHRHHHNHRHHITTHSNTSNPRLHQAFLALQAWKQVIYSDPKNLTTNWKGPSVCNYFGVYCAPALDDPTIQVVAGIDLNHGNIAGFLPNELGLLTDLALLHLNSNRFCGILPETLSNLTVLYEIDLSNNRFVGPFPMVVLSLPELNYLDIRYNEFEGPLPPQLFNKKLDAIFVNNNLLTNVIPSNFSGSSASVIVFAHNKFNGGLPPSIARLADTLEELVLINSSLTGCLPQEVGFLYKLKVLDISFNKVAGPIPYSLAGLAHLEQLDLAHNMMSGNVYEGVCTLPNLANFTFSYNFFCEEDGICRNLTSKGVVYEDRRNCLPEKPLQRSEKECNAVLDHPVDCLDHPWEGGGEHGSLGGVTRTFGPSIAASPVSMPIWSPSAAPSHS 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10518578 10519858 - Conep12aG0152300.1 Cone12ag1471 450315

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1471 426 SUPERFAMILY L domain-like 64 352 - -
Cone12ag1471 426 Pfam Leucine Rich Repeat 137 156 IPR001611 GO:0005515(InterPro)
Cone12ag1471 426 MobiDBLite consensus disorder prediction 37 53 - -
Cone12ag1471 426 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 14 388 IPR051582 -
Cone12ag1471 426 MobiDBLite consensus disorder prediction 37 56 - -
Cone12ag1471 426 Pfam Leucine rich repeat 253 311 IPR001611 GO:0005515(InterPro)
Cone12ag1471 426 Gene3D Ribonuclease Inhibitor 230 342 IPR032675 -
Cone12ag1471 426 Gene3D Ribonuclease Inhibitor 65 229 IPR032675 -
Cone12ag1471 426 FunFam Leucine-rich repeat extensin-like protein 1 65 226 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1471 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1471 Cone-Chr12:10518578 Cone4ag1835 Cone-Chr4:13239822 1.67E-56 dispersed
Cone4ag0264 Cone-Chr4:1182885 Cone12ag1471 Cone-Chr12:10518578 9.81E-59 transposed
Cone12ag1471 Cone-Chr12:10518578 Cone8ag1516 Cone-Chr8:11443100 3.29E-117 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g277 . . . . . . . . . . . . . . Sed05g1943 . . Bhi05g01965 Tan02g0208 Cmetu01g0388 Lac12g0736 Hepe02g0129 . . . . . . . . . . . . Cone12ag1471 . . . Cme01g00299 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi11g01698 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone4ag0716 . 68 412 Leucine-rich Repeat extension Gene Families AT1G62440 64.0 1.8e-51 201.8
Cone4ag1835 . 48 389 Leucine-rich Repeat extension Gene Families AT1G62440 56.1 2.3e-46 184.9
Cone7ag0673 . 68 412 Leucine-rich Repeat extension Gene Families AT1G62440 62.0 3.9e-46 184.1
Cone17ag1306 . 55 392 Leucine-rich Repeat extension Gene Families AT1G62440 61.8 5.6e-45 180.3
Cone5ag1503 . 66 245 Leucine-rich Repeat extension Gene Families AT1G62440 66.7 8.4e-41 166.4
Cone4ag0264 . 39 364 Leucine-rich Repeat extension Gene Families AT1G62440 56.4 2.4e-40 164.9
Cone4ag1548 . 58 226 Leucine-rich Repeat extension Gene Families AT1G62440 69.2 1.2e-39 162.5
Cone2ag0284 . 66 236 Leucine-rich Repeat extension Gene Families AT1G62440 66.1 1.3e-38 159.1
Cone16ag0754 . 67 237 Leucine-rich Repeat extension Gene Families AT1G62440 66.7 1.3e-38 159.1
Cone7ag1740 . 3 212 Leucine-rich Repeat extension Gene Families AT1G62440 57.1 2.3e-38 158.3
Cone12ag1471 . 58 382 Leucine-rich Repeat extension Gene Families AT1G62440 52.3 3.0e-38 157.9
Cone4ag0716 . 1 413 Leucine-rich Repeat extension Gene Families AT4G13340 71.6 1.9e-74 278.1
Cone7ag0673 . 35 413 Leucine-rich Repeat extension Gene Families AT4G13340 76.4 4.0e-72 270.4
Cone16ag0754 . 39 411 Leucine-rich Repeat extension Gene Families AT4G13340 75.1 3.1e-64 244.2
Cone2ag0284 . 38 410 Leucine-rich Repeat extension Gene Families AT4G13340 73.8 1.5e-63 241.9
Cone4ag1835 . 34 386 Leucine-rich Repeat extension Gene Families AT4G13340 65.0 1.1e-56 219.2
Cone5ag1503 . 21 266 Leucine-rich Repeat extension Gene Families AT4G13340 57.7 9.2e-45 179.5
Cone7ag1740 . 1 183 Leucine-rich Repeat extension Gene Families AT4G13340 77.0 2.3e-43 174.9
Cone17ag1306 . 18 212 Leucine-rich Repeat extension Gene Families AT4G13340 62.6 2.1e-41 168.3
Cone20ag0166 . 18 224 Leucine-rich Repeat extension Gene Families AT4G13340 65.9 2.4e-40 164.9
Cone4ag0264 . 39 367 Leucine-rich Repeat extension Gene Families AT4G13340 56.1 3.1e-40 164.5
Cone12ag1471 . 55 382 Leucine-rich Repeat extension Gene Families AT4G13340 55.9 3.8e-38 157.5
Cone4ag1548 . 13 225 Leucine-rich Repeat extension Gene Families AT4G13340 56.8 1.4e-37 155.6
Cone4ag0716 . 35 417 Leucine-rich Repeat extension Gene Families AT3G24480 77.7 8.3e-87 318.5
Cone7ag0673 . 35 413 Leucine-rich Repeat extension Gene Families AT3G24480 75.7 5.8e-80 295.8
Cone16ag0754 . 31 407 Leucine-rich Repeat extension Gene Families AT3G24480 72.5 1.1e-70 265.0
Cone2ag0284 . 30 406 Leucine-rich Repeat extension Gene Families AT3G24480 71.2 2.3e-68 257.3
Cone4ag1835 . 34 386 Leucine-rich Repeat extension Gene Families AT3G24480 62.1 3.3e-59 226.9
Cone5ag1503 . 18 266 Leucine-rich Repeat extension Gene Families AT3G24480 59.2 1.5e-48 191.4
Cone4ag0264 . 25 367 Leucine-rich Repeat extension Gene Families AT3G24480 56.4 1.9e-46 184.5
Cone17ag1306 . 17 212 Leucine-rich Repeat extension Gene Families AT3G24480 64.5 4.2e-46 183.3
Cone7ag1740 . 1 183 Leucine-rich Repeat extension Gene Families AT3G24480 70.5 5.6e-43 172.9
Cone4ag1548 . 17 225 Leucine-rich Repeat extension Gene Families AT3G24480 60.3 6.9e-41 166.0
Cone20ag0166 . 17 404 Leucine-rich Repeat extension Gene Families AT3G24480 58.1 1.2e-40 165.2
Cone12ag1471 . 58 382 Leucine-rich Repeat extension Gene Families AT3G24480 53.4 2.9e-39 160.6
Cone4ag0264 . 6 364 Leucine-rich Repeat extension Gene Families AT3G22800 61.4 5.7e-61 232.6
Cone4ag1835 . 60 386 Leucine-rich Repeat extension Gene Families AT3G22800 66.2 2.2e-52 204.1
Cone12ag1471 . 57 382 Leucine-rich Repeat extension Gene Families AT3G22800 61.5 2.0e-50 197.6
Cone4ag0716 . 80 412 Leucine-rich Repeat extension Gene Families AT3G22800 62.4 9.1e-43 172.2
Cone7ag0673 . 80 412 Leucine-rich Repeat extension Gene Families AT3G22800 64.5 1.3e-41 168.3
Cone7ag1740 . 1 282 Leucine-rich Repeat extension Gene Families AT3G22800 71.0 5.0e-41 166.4
Cone2ag0284 . 78 402 Leucine-rich Repeat extension Gene Families AT3G22800 63.3 2.1e-39 161.0
Cone16ag0754 . 79 403 Leucine-rich Repeat extension Gene Families AT3G22800 63.9 2.1e-39 161.0
Cone4ag1835 . 32 386 Leucine-rich Repeat extension Gene Families AT5G25550 62.0 2.1e-54 210.7
Cone4ag0264 . 33 364 Leucine-rich Repeat extension Gene Families AT5G25550 61.4 2.0e-44 177.6
Cone2ag0284 . 52 402 Leucine-rich Repeat extension Gene Families AT5G25550 62.8 2.5e-39 160.6
Cone7ag0673 . 54 405 Leucine-rich Repeat extension Gene Families AT5G25550 60.3 4.3e-39 159.8
Cone4ag0716 . 54 405 Leucine-rich Repeat extension Gene Families AT5G25550 57.8 9.6e-39 158.7
Cone16ag0754 . 53 403 Leucine-rich Repeat extension Gene Families AT5G25550 62.5 8.2e-38 155.6
Cone12ag1471 . 58 382 Leucine-rich Repeat extension Gene Families AT5G25550 55.1 6.9e-37 152.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012968 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 28