Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1471 ATGGCTTCGTTTTGGTTCTCTTCCTTCACCAACTATGCCCTTCTCTTCCTAAATCTATCTTTGTTATTCAACAATCTAGCCGCCAAGCACAGCGGTTTCACTGCCCGACACAGCCACCACCGTCACCATCACAATCACCGTCACCATATCACCACCCACTCCAACACATCAAACCCAAGACTCCACCAAGCTTTTCTTGCACTCCAAGCATGGAAACAAGTGATTTACTCGGACCCGAAAAACTTAACCACCAATTGGAAGGGCCCGTCTGTTTGTAACTACTTTGGAGTATATTGTGCACCTGCTCTTGACGATCCCACCATTCAAGTAGTTGCCGGAATCGACCTCAATCATGGCAACATAGCCGGATTCCTTCCCAATGAATTAGGCCTCTTGACCGATCTTGCTCTCCTTCATCTGAATAGCAACCGGTTTTGCGGCATCCTTCCAGAAACTCTATCCAACCTAACCGTCCTTTATGAGATCGATTTAAGCAACAACCGATTTGTGGGGCCTTTTCCGATGGTGGTCCTCTCTCTCCCGGAACTAAACTACCTTGATATCCGCTACAACGAATTCGAAGGGCCGTTACCTCCTCAGCTTTTCAACAAAAAGCTTGATGCAATATTCGTAAATAACAATCTCCTTACAAACGTAATTCCATCAAATTTTAGTGGAAGTTCAGCTTCTGTGATTGTATTTGCTCACAACAAGTTTAATGGAGGTCTTCCTCCAAGCATAGCTCGACTGGCCGACACTTTGGAGGAGCTTGTACTAATCAATTCTAGTTTGACAGGGTGTCTGCCTCAAGAGGTTGGGTTTCTTTACAAATTGAAAGTTCTGGATATAAGCTTTAACAAAGTGGCTGGTCCTATTCCTTATAGTTTAGCAGGATTAGCTCATTTGGAGCAATTGGATTTGGCCCATAATATGATGAGTGGGAATGTTTACGAAGGAGTTTGCACCCTTCCAAATTTGGCTAATTTCACATTCTCCTATAACTTCTTCTGTGAAGAGGACGGGATTTGTCGGAATCTGACTTCGAAAGGGGTTGTATACGAAGACCGTCGTAATTGTTTGCCGGAGAAGCCATTGCAGAGGAGTGAGAAGGAATGTAATGCTGTGCTGGATCATCCTGTTGACTGCTTAGATCATCCGTGGGAAGGTGGTGGGGAGCATGGTAGTTTGGGTGGTGTCACTAGAACTTTTGGCCCAAGTATTGCAGCAAGTCCCGTGTCGATGCCAATATGGTCGCCTTCTGCTGCTCCAAGCCACTCATGA 1281 45.43 MASFWFSSFTNYALLFLNLSLLFNNLAAKHSGFTARHSHHRHHHNHRHHITTHSNTSNPRLHQAFLALQAWKQVIYSDPKNLTTNWKGPSVCNYFGVYCAPALDDPTIQVVAGIDLNHGNIAGFLPNELGLLTDLALLHLNSNRFCGILPETLSNLTVLYEIDLSNNRFVGPFPMVVLSLPELNYLDIRYNEFEGPLPPQLFNKKLDAIFVNNNLLTNVIPSNFSGSSASVIVFAHNKFNGGLPPSIARLADTLEELVLINSSLTGCLPQEVGFLYKLKVLDISFNKVAGPIPYSLAGLAHLEQLDLAHNMMSGNVYEGVCTLPNLANFTFSYNFFCEEDGICRNLTSKGVVYEDRRNCLPEKPLQRSEKECNAVLDHPVDCLDHPWEGGGEHGSLGGVTRTFGPSIAASPVSMPIWSPSAAPSHS 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10518578 10519858 - Conep12aG0152300.1 Cone12ag1471 450315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1471 426 SUPERFAMILY L domain-like 64 352 - -
Cone12ag1471 426 Pfam Leucine Rich Repeat 137 156 IPR001611 GO:0005515(InterPro)
Cone12ag1471 426 MobiDBLite consensus disorder prediction 37 53 - -
Cone12ag1471 426 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 14 388 IPR051582 -
Cone12ag1471 426 MobiDBLite consensus disorder prediction 37 56 - -
Cone12ag1471 426 Pfam Leucine rich repeat 253 311 IPR001611 GO:0005515(InterPro)
Cone12ag1471 426 Gene3D Ribonuclease Inhibitor 230 342 IPR032675 -
Cone12ag1471 426 Gene3D Ribonuclease Inhibitor 65 229 IPR032675 -
Cone12ag1471 426 FunFam Leucine-rich repeat extensin-like protein 1 65 226 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1471 Cone-Chr12:10518578 Cone4ag1835 Cone-Chr4:13239822 1.67E-56 dispersed
Cone4ag0264 Cone-Chr4:1182885 Cone12ag1471 Cone-Chr12:10518578 9.81E-59 transposed
Cone12ag1471 Cone-Chr12:10518578 Cone8ag1516 Cone-Chr8:11443100 3.29E-117 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1471 - - - 0.0