Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1475 ATGGCTGCAAAAGAGAAGAACGGTGCTAAGAGGGGAAGCAGTGCTTCTGCTAATGCTGGAAATAACAATGGCAAGGAGATGCATTTTAGAGGGGTGAGGAAGAGGCCCTGGGGAAGATATGCCGCCGAGATTCGGGACCCGGGGAAGAAGAGCCGGGTCTGGTTAGGCACCTTCGACACCCCTGAAGAGGCGGCGCGCGCCTACGACACAGCTGCGCGTCAATTTCGCGGCGTTAAAGCGAAGACCAATTTCCCTTTGCCTTCCGAAGATCCGTCGTCCTTACAGAGAACTAACCAGAGCCCGAGCGAGAGCAGCACGGTGGAGTCATCCTCGTCAACCAGCCAAGACAGGACAGCTGCAGGTACTGAGGTGAGCCGACGCATCGTCGGCGGTGGCGGCGGTTTCGCGACGCTTGGTGCGTTCCCGTTTGTAAATCAGCAGAAGCCTCCTCATGTCATGGTAGGATGTGGTAGCAGTGTGGTTACAAACGCGCGTCCGGTTTTGTTTTTGGACGCGCTTGTCAGACCGCAGTTTGCGGCCCAGGCTTATCCGATCCAGTTTGGCACGGAAACTGTTGATCTCACTTCCCGGTTTGGAGGCAGGATCCAGTCTTGTGACTCGGATTCTTCATGGATCGTACATAAGCCCAAAAAACAAGTTCTTAATCTCGATCTTAACCTTGCCCCGCCTGTGGATGCTTAA 702 54.84 MAAKEKNGAKRGSSASANAGNNNGKEMHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTPEEAARAYDTAARQFRGVKAKTNFPLPSEDPSSLQRTNQSPSESSTVESSSSTSQDRTAAGTEVSRRIVGGGGGFATLGAFPFVNQQKPPHVMVGCGSSVVTNARPVLFLDALVRPQFAAQAYPIQFGTETVDLTSRFGGRIQSCDSDSSWIVHKPKKQVLNLDLNLAPPVDA 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10549137 10550193 - Conep12aG0152700.1 Cone12ag1475 450319

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1475 233 Gene3D AP2/ERF domain 27 86 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag1475 233 SMART rav1_2 28 91 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag1475 233 CDD AP2 28 85 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag1475 233 FunFam Ethylene-responsive transcription factor 2 27 86 - -
Cone12ag1475 233 PRINTS Ethylene responsive element binding protein signature 51 67 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag1475 233 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag1475 233 Pfam AP2 domain 28 77 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag1475 233 MobiDBLite consensus disorder prediction 1 54 - -
Cone12ag1475 233 MobiDBLite consensus disorder prediction 27 52 - -
Cone12ag1475 233 SUPERFAMILY DNA-binding domain 28 86 IPR016177 GO:0003677(InterPro)
Cone12ag1475 233 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag1475 233 MobiDBLite consensus disorder prediction 81 125 - -
Cone12ag1475 233 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 7 119 - -
Cone12ag1475 233 MobiDBLite consensus disorder prediction 86 121 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1475 K09286 - - csv:101210659 211.46
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1475 Cone-Chr12:10549137 Cone9ag0999 Cone-Chr9:5159303 1.14E-46 dispersed
Cone1ag0177 Cone-Chr1:1000884 Cone12ag1475 Cone-Chr12:10549137 6.20E-44 wgd
Cone12ag1475 Cone-Chr12:10549137 Cone6ag0166 Cone-Chr6:810460 1.09E-41 wgd
Cone12ag1475 Cone-Chr12:10549137 Cone8ag1521 Cone-Chr8:11472003 3.78E-142 wgd
Cone12ag1475 Cone-Chr12:10549137 Cone9ag0191 Cone-Chr9:828398 2.05E-35 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g268 . . . . . . . Bma08g00565 . Cmo19g01038 . . . . Sed05g1898 . Cpe04g00806 Bhi05g01949 Tan02g0197 Cmetu01g1557 Lac12g0745 Hepe02g0121 . . . . . . . . . Cone3ag1463 . Cone8ag1521 Cone12ag1475 . Csa07g00482 . . . Blo13g00356 . Bda15g00895 . . . . . . Cmo20g00258 Cma11g01910 Cma19g00998 Car11g01596 Car19g00789 . . . . . . . . . . . . . . . . Lsi11g01709 . Chy01g00321 .
Vvi19g564 . . . . Bpe09g00157 . Bma10g00572 Bma13g01075 Cmo16g00944 . . . . . . . . . . . . . . . Cla10g00484 Cam10g0471 Cec10g0491 Cco10g0478 Clacu10g0490 Cmu10g1318 Cre10g0724 . Cone10ag1399 Cone8ag1554 Cone12ag1475 . Csa03g00483 . Cme06g02844 Blo07g00887 . Bda05g00702 Bda12g00930 . Bpe03g00777 . . . . . . Cma16g00908 . Car16g00883 . . Bhi11g00585 Tan01g1742 Cmetu06g0936 . Hepe06g0015 . . . . . . . . . Lsi05g00571 . Chy06g01839 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008829 1 1 1 1 0 1 2 1 1 1 1 1 2 0 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44550 PF06658 DUF1168 4.00E-27 No_clan Cone TF