Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1483 ATGGAGGCAGATCGCGAGTACAGAAGCAAAGAGAGGATCGTACTAGTTTCTATCGTCGCGCTTGCTTCTCTAGCCCTAGCTTCGTTGTTCGTCGCCTTGTGCTATTACATCTATATCAGCAACAAGATCTCCAATCGTCTTAAGAAGCTTAAAAGGATTGATCATGGTGATAAAGTTTGTTTTCAAAATCTGAAAGTCGCTACTGAGAAAGGACTTCAGGTATTCACCTACAAGCAGCTACACTCTGCAACTGGTGGTTTCAGCAAGTCTAATGTGGTTGGGCATGGTGGCTTTGGGCTAGTATACAGGGGAGTGCTTAGCGATGGGAGGAAAGTTGCAATTAAGTTGATGGATCAAGCAGGAAAGCAGGGAGAAGATGAATTTACAGTGGAGGTTGAATTGCTAAGTTGGCTTCGCTCTCCATATTTGCTGGCACTGCTTGGGTATTGCACAGATAACAATCATAAGTTGCTGGTGTATGAATTTATGGCGAATGGAGGGTTGCAGGAGCATTTGTATCCTGTTAGCAGTTCCATTTCTGTCTGCTTGAAGTTGGACTGGGACACACGGTTGAGAATTGCTTTTGAAGCTGCAAAAGGCTTGGAGTATCTACATGAACATGTCAGTCCTCCAGTGATTCACAGGGATTTTAAGAGCAGCAATATTTTGCTCGACACAAATTTTCATGCCAAAGTTTCTGATTTTGGATTAGCCAAGATTGGATCAGACAAAGCAGGCGGGCATGTCTCTACTAGAGTATTGGGCACACAGGGATATGTTGCCCCCGAATATGCATTAACAGGCCATCTCACGACTAAGTCAGATGTCTACAGTTATGGGGTTGTCCTTTTGGAGCTGCTCACAGGAAAAGTTCCAGTAGACATGAAAAGACCTCCTGGAGAAGCTGCTATTGTTTCTTGGGCTTTGCCGAGGCTGACAGATAGAGACAAAGTTGTACACATTATGGATCCTTCACTTGAGGGTCAGTACTCAATGAAGGATGTTATCCAGGTGGCAGCAATTGCTGCCATGTGCGTTCAACCTGAGGCAGATTACAGGCCTTTGATGGCTGATGTCGTCCAATCACTGGTCCCACTTGTTAAAACTCACCGAGCAAATTCCAAGGTTGGTAACAGTTCAAGCTTCATCGCCACCAAGTCACCTACTACACACGATTCCGGCAAAGCAAGTGTAGAAGATCATTTTGAAAGGTATATATAG 1221 44.64 MEADREYRSKERIVLVSIVALASLALASLFVALCYYIYISNKISNRLKKLKRIDHGDKVCFQNLKVATEKGLQVFTYKQLHSATGGFSKSNVVGHGGFGLVYRGVLSDGRKVAIKLMDQAGKQGEDEFTVEVELLSWLRSPYLLALLGYCTDNNHKLLVYEFMANGGLQEHLYPVSSSISVCLKLDWDTRLRIAFEAAKGLEYLHEHVSPPVIHRDFKSSNILLDTNFHAKVSDFGLAKIGSDKAGGHVSTRVLGTQGYVAPEYALTGHLTTKSDVYSYGVVLLELLTGKVPVDMKRPPGEAAIVSWALPRLTDRDKVVHIMDPSLEGQYSMKDVIQVAAIAAMCVQPEADYRPLMADVVQSLVPLVKTHRANSKVGNSSSFIATKSPTTHDSGKASVEDHFERYI 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10588937 10591220 - Conep12aG0153500.1 Cone12ag1483 450327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1483 406 SUPERFAMILY Protein kinase-like (PK-like) 70 363 IPR011009 -
Cone12ag1483 406 ProSitePatterns Protein kinases ATP-binding region signature. 93 115 IPR017441 GO:0005524(InterPro)
Cone12ag1483 406 FunFam Serine/threonine-protein kinase PBS1 55 162 - -
Cone12ag1483 406 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone12ag1483 406 ProSiteProfiles Protein kinase domain profile. 87 367 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag1483 406 Gene3D Phosphorylase Kinase; domain 1 48 162 - -
Cone12ag1483 406 MobiDBLite consensus disorder prediction 379 398 - -
Cone12ag1483 406 FunFam Receptor-like serine/threonine-protein kinase ALE2 163 381 - -
Cone12ag1483 406 Pfam Protein tyrosine and serine/threonine kinase 90 363 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone12ag1483 406 PANTHER OS01G0750732 PROTEIN 21 392 IPR050885 -
Cone12ag1483 406 Gene3D Transferase(Phosphotransferase) domain 1 163 387 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1483 Cone-Chr12:10588937 Cone5ag0023 Cone-Chr5:152332 2.40E-129 dispersed
Cone17ag0996 Cone-Chr17:7667225 Cone12ag1483 Cone-Chr12:10588937 1.18E-72 dispersed
Cone4ag1911 Cone-Chr4:13583060 Cone12ag1483 Cone-Chr12:10588937 3.76E-43 dispersed
Cone7ag1825 Cone-Chr7:11892211 Cone12ag1483 Cone-Chr12:10588937 5.81E-42 dispersed
Cone8ag0522 Cone-Chr8:3737160 Cone12ag1483 Cone-Chr12:10588937 2.09E-50 transposed
Cone1ag0211 Cone-Chr1:1272949 Cone12ag1483 Cone-Chr12:10588937 1.65E-27 wgd
Cone12ag1483 Cone-Chr12:10588937 Cone5ag1654 Cone-Chr5:11717761 9.87E-28 wgd
Cone12ag1483 Cone-Chr12:10588937 Cone5ag1687 Cone-Chr5:12001927 3.77E-40 wgd
Cone12ag1483 Cone-Chr12:10588937 Cone6ag0948 Cone-Chr6:4951049 2.41E-33 wgd
Cone12ag1483 Cone-Chr12:10588937 Cone8ag1529 Cone-Chr8:11506065 4.05E-265 wgd
Cone12ag1483 Cone-Chr12:10588937 Cone8ag0086 Cone-Chr8:449382 1.66E-29 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81992 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1483 - - - 0.0