Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1487 ATGGAGGATACACGAGAAGATGTTGGGACAACAGATCAAGGCCGTTCTAATGCTTCTTGGTGGACTTCAGATTTTATGGAAAAATTTGGATCCGTCTCTTTGGGTTCTCGTGAAGGAACCATAAGTAATAAAGAATTGCTTAGAAGCTCAGAACAAGATGTGCTGTCACCTCAAAAGGCTTCTCAAGTTCTTTGGCATACCGGAGTGCTTTCTGATCCTATTCCAAATGGATTTTATTCCGTCATTCCAGAGAAAAGGCTGACGGAGCTCTTTGATAGCATTCCTACCCTGGATGAGCTGCATGCTTTGGGGAGTGGGGGTTTCAGGGCTGATATTATCCTTGTAGATTCTGAGAAAGATAAAAAGCTAGGCAACCTGAAGCGACTAATTTTGGCATTGGTTAAAGGATTAAATTCAAATCCAGCAGCAGTGATAAAGAAGATTGCTGGCCTTGTATCTGATGTTTATAAAAGGCCAATCCTGGTAAGTCCAGCAAAATCAACCCTAGAAGAAACCTCCCACATGTTTGATGATCGAGGTGTCCAGCTTCTGGGGCAAATAAAATACGGTTCATGCCGACCTCGAGCAATCTTATTTAAGGTTCTAGCAGATACTGTGGGTCTTGAAAGCAGCCTTATGGTGGGTTTGCCAAATGATGGGACCATTGGGTGTGTAGACTCATATAGGCACATGTCCGTTCTAGTTGTGTTGAACTCTGTGGAACTTTTGGTTGATCTCATGCGATTCCCTGGCCAGTTGTTGCCTCGATCAACAAAGGCAATTTATATGACCCATATTTCTGCAGCAGGAGAGAGTGATTCTGCTGAAAATGACTCCTGTGACTCGCCACTAGAACCAAATAGCCCTCTATATGGGTTTTCAGAGAGAGTTGATCCGGATAGTGCTGAGAAAGATGAGACCCTGCAGTTTCATCGAAAGTTTGAAGCAGCTTCAAATGTATCAGGTCCTTCATTGCGGGATAAGATGTTGAGATCTGCTTCCTCTGTTAGTTTTTCACATAGTGAACCCAACATTGCAACTACATTTTGGAGGCGTAGTCGGAGAAAGGTCATGACCGAGCAGCGGACTGCTAGTTCAAGTCCTGAGCATCCTTCACATCAAGCACGCGGACGATCCATGCTTAGTGGTGATAGGAAAGCATTTAGAGATTTTGCTGATGATGCGTCTACATCAAGATCAGATGGTGCTTCAACTTCAGAAGCTCGTCGATTAAGAAGAAGAAGCATGAGCATCACTCCAGAGATTGGTGATGATATCGTAAGGGCTGTACGAGCAATGAACGAAACATTGAAGCAAAACCGTGTATTGAGGGAGGGTGGAAATGACAGGTCATTCTCCCATTCTTCAGATGACAGAAATTGTAATTCAGATATTCAGAAAAATGTGCCAAATTTTCACCTCAATGGTCATGGTGAAGGTACTAGTGAAAGGTCTGCTCTGTATTCCCTTTCAAGAGACCAAGATGTCTCACAAAGAGGAATGTCATTACCCTCATCTCCACATGATTATAGGAGTCAAACATCTGAGAGGAGTGGACCTTCAGGATCCATGATAAATGATGAATTGGTCTCAACATGGAATAAGGTACTTGAATCTTCCATGTTTGACAACAGACCTCTGTTACCTTACCAAGAGTGGAATATCGATTACTCAGAATTGACAGTTGGAATTCGTATAGGAATTGGTTTCTTTGGAGAAGTTTTTCGTGGCATATGGAATGGAACAGATGTTGCAATTAAGGTTTTCCTAGAGCAAGATCTAACTGCTGAAAACATGGAAGACTTTTGCAATGAGATATCCATTCTCAGCCATCTCCGACATCCTAACGTTATTTTATTTCTGGGTGCATGCACTAAGCCCCCGCACCTGTCAATGGTTACGGAATACATGGAATATGGATCTTTATACTCTTTAATCCATTTGAGTGGGCAGAAGAAGAAGCTGAGCTGGCGGAGGAGACTAAAGATGTTGCGCGATATATGCAGGGGGTTGATGTGCATACATAGGATGAAAATAGTTCATCATGATCTGAAAAGTGCGAATTGCCTTGTGAACAAGCACTGGACTGTCAAGATCTGTGATTTTGGGCTCTCGAGAATAACAACCAATTTGCCCATAAAGGGTTCCTCCTCTGCAGGAACGCCTGAATGGATGGCTCCTGAGCTTTTTCGGAACGAACCATTCACCGAAAAATGTGATATTTTCAGCCTTGGGGTTATCATGTGGGAACTCTGTACTCTAAGTAGGCCATGGGAAGGAGTGCCACCAGAGAGGGTAGGCTATGCAGTTGGGAGCAAGGGTTCTCGATTAAATATTCCCGAAGGTCCATTGGGCAGGCTAATATCAGATTGTTGGGGAGAACCACATGTACGTCCAAGTTGTGAGGAGATTCTCTCACGCTTGCTAGACTGTGAATACTCTCTCTGCTGA 2451 43.53 MEDTREDVGTTDQGRSNASWWTSDFMEKFGSVSLGSREGTISNKELLRSSEQDVLSPQKASQVLWHTGVLSDPIPNGFYSVIPEKRLTELFDSIPTLDELHALGSGGFRADIILVDSEKDKKLGNLKRLILALVKGLNSNPAAVIKKIAGLVSDVYKRPILVSPAKSTLEETSHMFDDRGVQLLGQIKYGSCRPRAILFKVLADTVGLESSLMVGLPNDGTIGCVDSYRHMSVLVVLNSVELLVDLMRFPGQLLPRSTKAIYMTHISAAGESDSAENDSCDSPLEPNSPLYGFSERVDPDSAEKDETLQFHRKFEAASNVSGPSLRDKMLRSASSVSFSHSEPNIATTFWRRSRRKVMTEQRTASSSPEHPSHQARGRSMLSGDRKAFRDFADDASTSRSDGASTSEARRLRRRSMSITPEIGDDIVRAVRAMNETLKQNRVLREGGNDRSFSHSSDDRNCNSDIQKNVPNFHLNGHGEGTSERSALYSLSRDQDVSQRGMSLPSSPHDYRSQTSERSGPSGSMINDELVSTWNKVLESSMFDNRPLLPYQEWNIDYSELTVGIRIGIGFFGEVFRGIWNGTDVAIKVFLEQDLTAENMEDFCNEISILSHLRHPNVILFLGACTKPPHLSMVTEYMEYGSLYSLIHLSGQKKKLSWRRRLKMLRDICRGLMCIHRMKIVHHDLKSANCLVNKHWTVKICDFGLSRITTNLPIKGSSSAGTPEWMAPELFRNEPFTEKCDIFSLGVIMWELCTLSRPWEGVPPERVGYAVGSKGSRLNIPEGPLGRLISDCWGEPHVRPSCEEILSRLLDCEYSLC 816
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10611532 10617666 + Conep12aG0153900.1 Cone12ag1487 450331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1487 816 ProSiteProfiles Protein kinase domain profile. 560 815 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag1487 816 SUPERFAMILY Protein kinase-like (PK-like) 535 808 IPR011009 -
Cone12ag1487 816 CDD STKc_MAP3K-like 566 808 - -
Cone12ag1487 816 MobiDBLite consensus disorder prediction 349 416 - -
Cone12ag1487 816 Pfam Ethylene-responsive protein kinase Le-CTR1 58 253 - -
Cone12ag1487 816 MobiDBLite consensus disorder prediction 442 461 - -
Cone12ag1487 816 Gene3D Phosphorylase Kinase; domain 1 553 638 - -
Cone12ag1487 816 MobiDBLite consensus disorder prediction 272 302 - -
Cone12ag1487 816 SMART serkin_6 560 809 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag1487 816 ProSitePatterns Protein kinases ATP-binding region signature. 566 587 IPR017441 GO:0005524(InterPro)
Cone12ag1487 816 Gene3D Transferase(Phosphotransferase) domain 1 639 814 - -
Cone12ag1487 816 Pfam Protein tyrosine and serine/threonine kinase 562 808 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone12ag1487 816 PANTHER SERINE-THREONINE PROTEIN KINASE 300 808 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cone12ag1487 816 MobiDBLite consensus disorder prediction 496 524 - -
Cone12ag1487 816 MobiDBLite consensus disorder prediction 379 396 - -
Cone12ag1487 816 FunFam Serine/threonine-protein kinase isoform 1 551 638 - -
Cone12ag1487 816 MobiDBLite consensus disorder prediction 440 480 - -
Cone12ag1487 816 ProSitePatterns Serine/Threonine protein kinases active-site signature. 679 691 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1487 Cone-Chr12:10611532 Cone4ag1661 Cone-Chr4:12479695 3.70E-79 dispersed
Cone1ag0233 Cone-Chr1:1509819 Cone12ag1487 Cone-Chr12:10611532 1.12E-25 wgd
Cone10ag1367 Cone-Chr10:10649005 Cone12ag1487 Cone-Chr12:10611532 0 wgd
Cone12ag1487 Cone-Chr12:10611532 Cone6ag1010 Cone-Chr6:5633418 2.29E-40 wgd
Cone12ag1487 Cone-Chr12:10611532 Cone8ag1535 Cone-Chr8:11531445 0 wgd
Cone12ag1487 Cone-Chr12:10611532 Cone9ag1008 Cone-Chr9:5263645 2.01E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81993 PF00134 Cyclin_N 1.30E-27 CL0065 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1487 - - - 0.0