Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1505 ATGAAGCTAGAGCAGAACGATGAACAGTCCGAACAGACGTGCAGGACGATCGAGGTCGATGCGGTGAATCACCATCGGACTCTGGCGCAAACCGTTGTGATCGCCGGAGAGGAATTTGAAATGGATGGAGAGGACCTCTTCATACCTCCGCTTAACTTCGCCATGGTCGACTCTGGCATTTTCCGCTCCGGATTCCCGGACTCTAATAACTTCTCCTTCCTCCAAACCCTAGGCCTCCGCTCCATTATATGTATGTGTCCGGAGCCGTATCCAGAGGCAAACATGGAGTTCCTCAAGTCTAATGGAATAAGATTATTTCAATTCGGGATCGAAGGGTATAAGGAGCCCTTTGTAAACATCCCAGAGGATACAATTCGAGAAGCACTGAAAGTTGTGCTTGACGTGAGGAATCACCCGGTTCTAATACATTGTAAACGAGGGAAGCATCGAACTGGTTGTGTGGTTGGATGCTTGAGAAAACTGCAGAGGTGGTGCCTCACATCAGTTTTTGACGAGTACCAGCGTTTCGCAGCTGCCAAAGCAAGAGTTGCAGATCAGAGGTTCATGGAATTGTTTGACATTTCTAGCGTAAAGAATTTACCCTTGTCACTTTCTTGCTCGAAGAGGTAA 630 47.78 MKLEQNDEQSEQTCRTIEVDAVNHHRTLAQTVVIAGEEFEMDGEDLFIPPLNFAMVDSGIFRSGFPDSNNFSFLQTLGLRSIICMCPEPYPEANMEFLKSNGIRLFQFGIEGYKEPFVNIPEDTIREALKVVLDVRNHPVLIHCKRGKHRTGCVVGCLRKLQRWCLTSVFDEYQRFAAAKARVADQRFMELFDISSVKNLPLSLSCSKR 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10695053 10697257 - Conep12aG0155800.1 Cone12ag1505 450349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1505 209 PANTHER TYROSINE-PROTEIN PHOSPHATASE 18 201 - GO:0005737(PANTHER)|GO:0016791(PANTHER)
Cone12ag1505 209 FunFam probable tyrosine-protein phosphatase At1g05000 46 196 - -
Cone12ag1505 209 ProSitePatterns Tyrosine specific protein phosphatases active site. 142 152 IPR016130 GO:0016311(InterPro)
Cone12ag1505 209 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 48 194 IPR029021 -
Cone12ag1505 209 CDD PFA-DSP_Siw14 46 193 - -
Cone12ag1505 209 Gene3D Protein tyrosine phosphatase superfamily 46 196 IPR029021 -
Cone12ag1505 209 Pfam Tyrosine phosphatase family 48 199 IPR004861 -
Cone12ag1505 209 PRINTS Plant and fungal dual specificity phosphatase signature 84 97 IPR020428 GO:0016791(InterPro)
Cone12ag1505 209 PRINTS Plant and fungal dual specificity phosphatase signature 120 134 IPR020428 GO:0016791(InterPro)
Cone12ag1505 209 PRINTS Plant and fungal dual specificity phosphatase signature 103 117 IPR020428 GO:0016791(InterPro)
Cone12ag1505 209 PRINTS Plant and fungal dual specificity phosphatase signature 47 64 IPR020428 GO:0016791(InterPro)
Cone12ag1505 209 ProSiteProfiles Dual specificity protein phosphatase domain profile. 52 206 IPR020422 GO:0006470(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1505 Cone-Chr12:10695053 Cone5ag0937 Cone-Chr5:4009079 5.46E-78 dispersed
Cone5ag1838 Cone-Chr5:12920068 Cone12ag1505 Cone-Chr12:10695053 2.07E-103 transposed
Cone10ag1396 Cone-Chr10:10862174 Cone12ag1505 Cone-Chr12:10695053 5.03E-108 wgd
Cone12ag1505 Cone-Chr12:10695053 Cone8ag1552 Cone-Chr8:11633645 3.30E-136 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1505 K18045 - vvi:100251662 337.035