Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone12ag1507 | ATGCCTGACAATCGGAAAGCTCAGAAGAATGCACCTCCAAATCAATCTACTGCTAACGTTGAAGAAACCTTTTGGCGGTCGAAAATTAATGATAATCCGGATGGGGAAGATGTATTTCAATCAAGCCTATATCCGGAGAGAGCTGGTGAACCTGACTGCTTATTTTATTTGAGAACCGGCTTATGTGGCTATGGAAGTAATTGTCGTTACAATCACCCCATATATATCCCACAGAGTGCTTGGTACAATGGAGAACTTCCGGAAAGAGTTGGAAAACCTGACTGTGAGTATTTTCTAAAGACTGGTACCTGTAAATTTGGATCCTCCTGCAAATATCATCATCCAAGGGACAGGCGTGGTGCTGGACCAGTCACATTCAACATTTTAGGTCTCCCTATACGTCAGGAAGAGAAACCATGCCCATATTATATGCGAACTGGATCGTGCAAGTTTGGAGCTGCATGCAAGTTCCATCATCCCCAGCCTACATCACTTGGAACTTTGTTACCTCTAGCTGGATCTGCTGCCCTTGGATCTACAACCTCAGTATCATCAGGTCCACCTTATGTTAGTGGATTTTCCACATGGTCGTTGCCAAGAATGCCATATATAACTGGCCCGCAAGTACAAGGTCGAGAGCCCTACATGCCTGTTCTTCTTTCTCTTTCACAAGGAATTATGCCTGCACATGCCTGGAACACTTACACGGGAAACATAAATCCTACAACCTCCCCTACTATGCTTGGGTCCAATCTTGTCTACAACTCCAGGAACCTGGGAGAGTTTAGTTCTAATGGGCAGTTACACATGTCTTCAACTTCAAATGTCCCCCTTCCCGAGAGGCCTGATCAACCAGAATGCCGTTTTTTCATGAACACTAGGACCTGCAAATTTGGTTCCGATTGCAAGTTCCACCATCCGAAAGACAAGATGGTGCAATCAACTATAAACCCAATTGGGCTTCCCTCAAGACCTGGGCAGGCTGTATGTTCAAACTACAGTATGTATGGCATTTGTAAGTTTGGCCCATCTTGCAAATTTGATCACCCCTTTGCAGAAAATCATTATAACTGCGGGTTTGGCTTACCTCTCTCTAGTTATCCTATAAACATATCCAGTGCACCCTCTTCTGAGGCTTCTCCCAGTACATCATCTAAATCTCCTGAATGGGTTCAGAATCCCAATGCCGAGAGCAATATTAATCAGAACTCGGATACACAAGTTTCAGAAAACAAGCCCTGA | 1242 | 44.36 | MPDNRKAQKNAPPNQSTANVEETFWRSKINDNPDGEDVFQSSLYPERAGEPDCLFYLRTGLCGYGSNCRYNHPIYIPQSAWYNGELPERVGKPDCEYFLKTGTCKFGSSCKYHHPRDRRGAGPVTFNILGLPIRQEEKPCPYYMRTGSCKFGAACKFHHPQPTSLGTLLPLAGSAALGSTTSVSSGPPYVSGFSTWSLPRMPYITGPQVQGREPYMPVLLSLSQGIMPAHAWNTYTGNINPTTSPTMLGSNLVYNSRNLGEFSSNGQLHMSSTSNVPLPERPDQPECRFFMNTRTCKFGSDCKFHHPKDKMVQSTINPIGLPSRPGQAVCSNYSMYGICKFGPSCKFDHPFAENHYNCGFGLPLSSYPINISSAPSSEASPSTSSKSPEWVQNPNAESNINQNSDTQVSENKP | 413 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 10710518 | 10713463 | + | Conep12aG0156000.1 | Cone12ag1507 | 450351 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone12ag1507 | 413 | Gene3D | - | 124 | 172 | - | - | |
| Cone12ag1507 | 413 | SUPERFAMILY | CCCH zinc finger | 94 | 118 | IPR036855 | GO:0046872(InterPro) | |
| Cone12ag1507 | 413 | SMART | c3hfinal6 | 324 | 351 | IPR000571 | GO:0046872(InterPro) | |
| Cone12ag1507 | 413 | SMART | c3hfinal6 | 89 | 116 | IPR000571 | GO:0046872(InterPro) | |
| Cone12ag1507 | 413 | SMART | c3hfinal6 | 281 | 308 | IPR000571 | GO:0046872(InterPro) | |
| Cone12ag1507 | 413 | SMART | c3hfinal6 | 47 | 74 | IPR000571 | GO:0046872(InterPro) | |
| Cone12ag1507 | 413 | SMART | c3hfinal6 | 136 | 161 | IPR000571 | GO:0046872(InterPro) | |
| Cone12ag1507 | 413 | ProSiteProfiles | Zinc finger C3H1-type profile. | 89 | 117 | IPR000571 | GO:0046872(InterPro) | |
| Cone12ag1507 | 413 | ProSiteProfiles | Zinc finger C3H1-type profile. | 134 | 162 | IPR000571 | GO:0046872(InterPro) | |
| Cone12ag1507 | 413 | ProSiteProfiles | Zinc finger C3H1-type profile. | 324 | 352 | IPR000571 | GO:0046872(InterPro) | |
| Cone12ag1507 | 413 | SUPERFAMILY | CCCH zinc finger | 324 | 350 | IPR036855 | GO:0046872(InterPro) | |
| Cone12ag1507 | 413 | ProSiteProfiles | Zinc finger C3H1-type profile. | 47 | 75 | IPR000571 | GO:0046872(InterPro) | |
| Cone12ag1507 | 413 | SUPERFAMILY | CCCH zinc finger | 52 | 74 | IPR036855 | GO:0046872(InterPro) | |
| Cone12ag1507 | 413 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 92 | 116 | IPR000571 | GO:0046872(InterPro) | |
| Cone12ag1507 | 413 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 50 | 73 | IPR000571 | GO:0046872(InterPro) | |
| Cone12ag1507 | 413 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 326 | 350 | IPR000571 | GO:0046872(InterPro) | |
| Cone12ag1507 | 413 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 137 | 161 | IPR000571 | GO:0046872(InterPro) | |
| Cone12ag1507 | 413 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 283 | 308 | IPR000571 | GO:0046872(InterPro) | |
| Cone12ag1507 | 413 | SUPERFAMILY | CCCH zinc finger | 284 | 310 | IPR036855 | GO:0046872(InterPro) | |
| Cone12ag1507 | 413 | Gene3D | - | 45 | 123 | - | - | |
| Cone12ag1507 | 413 | Gene3D | - | 279 | 363 | - | - | |
| Cone12ag1507 | 413 | ProSiteProfiles | Zinc finger C3H1-type profile. | 281 | 309 | IPR000571 | GO:0046872(InterPro) | |
| Cone12ag1507 | 413 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Cone12ag1507 | 413 | SUPERFAMILY | CCCH zinc finger | 133 | 162 | IPR036855 | GO:0046872(InterPro) | |
| Cone12ag1507 | 413 | PANTHER | PROTEIN PHOSPHATASE RELATED | 15 | 352 | IPR050974 | GO:0003729(PANTHER) | |
| Cone12ag1507 | 413 | MobiDBLite | consensus disorder prediction | 8 | 22 | - | - | |
| Cone12ag1507 | 413 | MobiDBLite | consensus disorder prediction | 373 | 413 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone12ag1507 | Cone-Chr12:10710518 | Cone1ag1687 | Cone-Chr1:57933628 | 1.27E-28 | dispersed | |
| Cone10ag1398 | Cone-Chr10:10881579 | Cone12ag1507 | Cone-Chr12:10710518 | 3.11E-111 | wgd | |
| Cone12ag1507 | Cone-Chr12:10710518 | Cone3ag1462 | Cone-Chr3:33273405 | 1.16E-78 | wgd | |
| Cone12ag1507 | Cone-Chr12:10710518 | Cone8ag1553 | Cone-Chr8:11644733 | 8.26E-187 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 44553 | PF00067 | p450 | 3.30E-70 | No_clan | Cone | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone12ag1507 | - | - | - | 0.0 |