Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1508 ATGCGGCGAGGAAAGGTTGCCGCGGAATCAGAGACTGAAGCTAAGAAGAATCCGGTAAAGGAGATCAGGTTTCGCGGCGTCAGAAAGCGGCCTTGGGGCAAATACGCGGCCGAGATCAGAGATCCCTGGAAGAAGACGCGCGTTTGGCTCGGAACCTTCGACTCCGCCGAGGACGCAGCTCGAGCTTACGATGCCGCCGCTCGATCTCTCCGTGGTCCGAAGGCCAAAACTAACTTCCCTCTACATCATCATCCATCATCGATTCCTCCTCCTTTTCAACAACAAATCCCGTTCTATCAACCGCAGGATTTCCACGGTTCTAGTGGATTCTGCAAGATTGATTGCGTTCTTGTTAATAGGCCAACATCCAGCAGCGTGAGCTCCACCGTTGAGTCGTTCAGTGGTCCTAGAGTCTCGAATCCGGTCCCCTCTGTTCCTAGGATTCACCGGAAACCTGTAATGATGCCGATTCCACCAGATGACTGCCACAGCGATTGTGATTCCTCATCGTCGGTTATTGATGACGATGGCGGCTGTGTTCTGACGTCATCGTTGAGGAGAGTCTTGCCGTTCGATCTGAACCTACCGCCTCCTATGGACGATCTGGATTTATTCGGTGACGATCTTCAAGCTACTGCTTTGTGCTTCTGA 651 52.53 MRRGKVAAESETEAKKNPVKEIRFRGVRKRPWGKYAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARSLRGPKAKTNFPLHHHPSSIPPPFQQQIPFYQPQDFHGSSGFCKIDCVLVNRPTSSSVSSTVESFSGPRVSNPVPSVPRIHRKPVMMPIPPDDCHSDCDSSSSVIDDDGGCVLTSSLRRVLPFDLNLPPPMDDLDLFGDDLQATALCF 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10715136 10717107 + Conep12aG0156100.1 Cone12ag1508 450352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1508 216 Gene3D AP2/ERF domain 22 82 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag1508 216 SMART rav1_2 23 86 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag1508 216 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag1508 216 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag1508 216 SUPERFAMILY DNA-binding domain 24 81 IPR016177 GO:0003677(InterPro)
Cone12ag1508 216 FunFam Ethylene-responsive transcription factor 2 23 82 - -
Cone12ag1508 216 Pfam AP2 domain 23 72 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag1508 216 CDD AP2 23 80 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag1508 216 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag1508 216 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 8 181 - -
Cone12ag1508 216 MobiDBLite consensus disorder prediction 128 151 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1508 Cone-Chr12:10715136 Cone14ag1170 Cone-Chr14:9624721 2.64E-65 dispersed
Cone10ag1399 Cone-Chr10:10886244 Cone12ag1508 Cone-Chr12:10715136 7.05E-97 wgd
Cone12ag1508 Cone-Chr12:10715136 Cone3ag1463 Cone-Chr3:33278845 1.70E-97 wgd
Cone12ag1508 Cone-Chr12:10715136 Cone6ag0997 Cone-Chr6:5491872 6.93E-31 wgd
Cone12ag1508 Cone-Chr12:10715136 Cone8ag1554 Cone-Chr8:11648898 1.58E-152 wgd
Cone12ag1508 Cone-Chr12:10715136 Cone9ag0999 Cone-Chr9:5159303 6.85E-30 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44554 PF03798 TRAM_LAG1_CLN8 1.70E-38 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1508 K09286 - csv:101221703 209.92