Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone12ag1508 | ATGCGGCGAGGAAAGGTTGCCGCGGAATCAGAGACTGAAGCTAAGAAGAATCCGGTAAAGGAGATCAGGTTTCGCGGCGTCAGAAAGCGGCCTTGGGGCAAATACGCGGCCGAGATCAGAGATCCCTGGAAGAAGACGCGCGTTTGGCTCGGAACCTTCGACTCCGCCGAGGACGCAGCTCGAGCTTACGATGCCGCCGCTCGATCTCTCCGTGGTCCGAAGGCCAAAACTAACTTCCCTCTACATCATCATCCATCATCGATTCCTCCTCCTTTTCAACAACAAATCCCGTTCTATCAACCGCAGGATTTCCACGGTTCTAGTGGATTCTGCAAGATTGATTGCGTTCTTGTTAATAGGCCAACATCCAGCAGCGTGAGCTCCACCGTTGAGTCGTTCAGTGGTCCTAGAGTCTCGAATCCGGTCCCCTCTGTTCCTAGGATTCACCGGAAACCTGTAATGATGCCGATTCCACCAGATGACTGCCACAGCGATTGTGATTCCTCATCGTCGGTTATTGATGACGATGGCGGCTGTGTTCTGACGTCATCGTTGAGGAGAGTCTTGCCGTTCGATCTGAACCTACCGCCTCCTATGGACGATCTGGATTTATTCGGTGACGATCTTCAAGCTACTGCTTTGTGCTTCTGA | 651 | 52.53 | MRRGKVAAESETEAKKNPVKEIRFRGVRKRPWGKYAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARSLRGPKAKTNFPLHHHPSSIPPPFQQQIPFYQPQDFHGSSGFCKIDCVLVNRPTSSSVSSTVESFSGPRVSNPVPSVPRIHRKPVMMPIPPDDCHSDCDSSSSVIDDDGGCVLTSSLRRVLPFDLNLPPPMDDLDLFGDDLQATALCF | 216 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 10715136 | 10717107 | + | Conep12aG0156100.1 | Cone12ag1508 | 450352 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone12ag1508 | 216 | Gene3D | AP2/ERF domain | 22 | 82 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone12ag1508 | 216 | SMART | rav1_2 | 23 | 86 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone12ag1508 | 216 | PRINTS | Ethylene responsive element binding protein signature | 24 | 35 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone12ag1508 | 216 | PRINTS | Ethylene responsive element binding protein signature | 46 | 62 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone12ag1508 | 216 | SUPERFAMILY | DNA-binding domain | 24 | 81 | IPR016177 | GO:0003677(InterPro) | |
Cone12ag1508 | 216 | FunFam | Ethylene-responsive transcription factor 2 | 23 | 82 | - | - | |
Cone12ag1508 | 216 | Pfam | AP2 domain | 23 | 72 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone12ag1508 | 216 | CDD | AP2 | 23 | 80 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone12ag1508 | 216 | ProSiteProfiles | AP2/ERF domain profile. | 23 | 80 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone12ag1508 | 216 | PANTHER | AP2 DOMAIN CLASS TRANSCRIPTION FACTOR | 8 | 181 | - | - | |
Cone12ag1508 | 216 | MobiDBLite | consensus disorder prediction | 128 | 151 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone12ag1508 | Cone-Chr12:10715136 | Cone14ag1170 | Cone-Chr14:9624721 | 2.64E-65 | dispersed | |
Cone10ag1399 | Cone-Chr10:10886244 | Cone12ag1508 | Cone-Chr12:10715136 | 7.05E-97 | wgd | |
Cone12ag1508 | Cone-Chr12:10715136 | Cone3ag1463 | Cone-Chr3:33278845 | 1.70E-97 | wgd | |
Cone12ag1508 | Cone-Chr12:10715136 | Cone6ag0997 | Cone-Chr6:5491872 | 6.93E-31 | wgd | |
Cone12ag1508 | Cone-Chr12:10715136 | Cone8ag1554 | Cone-Chr8:11648898 | 1.58E-152 | wgd | |
Cone12ag1508 | Cone-Chr12:10715136 | Cone9ag0999 | Cone-Chr9:5159303 | 6.85E-30 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
44554 | PF03798 | TRAM_LAG1_CLN8 | 1.70E-38 | No_clan | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone12ag1508 | K09286 | - | csv:101221703 | 209.92 |