Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1527 ATGCAGCAAGATCAACGTAAAAAGAGTTCCGCAGAAATGGACTTTTTCTCAGAATATGGTGATGCCAATAGGTACAAAGTTCAAGAAGTTATAGGCAAAGGAAGTTATGGGGTAGTTTGTTCAGCTATTGACACTCATACCGGCCACAAAGTAGCAATTAAGAAAATACACGGAATTTTCGAGCATTTATCCGATGCGGCCCGCATTCTCCGTGAGATCAAGCTGCTTAGACTTCTACGGCATCCGGATATTGTAGAAATCAAACACATACTACTGCCCCCTTCTCAAAGGGACTTTAAAGATATTTTTGTGGTTTTTGAGCTCATGGAGTCGGATCTTCATCAAGTTATCAAGGCTAATGATGACTTGACACGTGAGCACTACCGGTTCTTTCTTTACCAGCTACTCCGAGCACTTAAGTACATCCACACAGCAAATGTATATCATAGAGACTTGAAACCAAAGAATATATTAGCAAATGCGAATTGTAAACTTAAAATCTGCGACTTTGGTTTGGCAAGAGTTGCATTTAGTGACACACCAACCACTGTTTTTTGGACGGACTATGTTGCTACTCGGTGGTATAGAGCACCAGAGCTATGTGGTTCTTTTTACTCCAAGTATACTCCTGCAATAGATATTTGGAGTATAGGCTGCATATTTGCTGAAGTATTGATGGGGAAGCCAATCTTCCCGGGTAAAAATGTGGTTCATCAGCTTGATTTGATGACTGATCTTCTTGGCACTCCTTCATTAGATACCATCTCTCGGGTACGTAATGATAAGGCTAGGAGGTACTTAACTAGCATGAGGAAGAAGCAGCCCATTCCTTTTACGCAAAAGTTTCCAAATGCAGATCCTCTAGCACTCTGTCTTCTAAAAAGATTGCTTGCTTTTGAGCCGAAGGATCGACCCACTGCCGAAGAGGCACTGGCAGATCCTTACTTTAAGGGATTGGCTAAAGCTGAGAGGGAACCTTCTTGCCAACCAATTACAAAGATGGAGTTTGAATTCGAGCGGAGAAAGGTCTCAAAGGACGACATAAGAGATCTAATATTCCGAGAGATACTAGAGTATCACCCTCAACTGTTAAAAGACTACATGAATGGAACTGAGAGGACAAACTTTCTCTATCCAAGCGCTGTAGATCAATTTCGGAAACAATTTGCACATCTCGAGGGAAATGGGGGTAAAAGTGGGCCAGTTATTCCTCTTGAAAGAAAGCATACATCTCTACCTAGGAGTACAATTGTACATTCAAATACAATAGCTCCTAAAGAGCCGTCACATATCATATCCATCACAGACCGGGATGTCCCAGAAGATTCATACAGCAAACATTCTAGAGACCCCCAAGGAAATTCTATGATGCATATATCTAGGACCACACAAGTGGCACAGGAGTTGTACCATTCGATAAAAGTATAG 1428 41.67 MQQDQRKKSSAEMDFFSEYGDANRYKVQEVIGKGSYGVVCSAIDTHTGHKVAIKKIHGIFEHLSDAARILREIKLLRLLRHPDIVEIKHILLPPSQRDFKDIFVVFELMESDLHQVIKANDDLTREHYRFFLYQLLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTVFWTDYVATRWYRAPELCGSFYSKYTPAIDIWSIGCIFAEVLMGKPIFPGKNVVHQLDLMTDLLGTPSLDTISRVRNDKARRYLTSMRKKQPIPFTQKFPNADPLALCLLKRLLAFEPKDRPTAEEALADPYFKGLAKAEREPSCQPITKMEFEFERRKVSKDDIRDLIFREILEYHPQLLKDYMNGTERTNFLYPSAVDQFRKQFAHLEGNGGKSGPVIPLERKHTSLPRSTIVHSNTIAPKEPSHIISITDRDVPEDSYSKHSRDPQGNSMMHISRTTQVAQELYHSIKV 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10784265 10788207 - Conep12aG0158100.1 Cone12ag1527 450371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1527 475 SUPERFAMILY Protein kinase-like (PK-like) 21 320 IPR011009 -
Cone12ag1527 475 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag1527 475 Gene3D Phosphorylase Kinase; domain 1 40 362 - -
Cone12ag1527 475 FunFam Mitogen-activated protein kinase 111 339 - -
Cone12ag1527 475 FunFam Mitogen-activated protein kinase 15 119 - -
Cone12ag1527 475 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag1527 475 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag1527 475 SMART serkin_6 25 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag1527 475 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524(InterPro)
Cone12ag1527 475 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 22 357 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Cone12ag1527 475 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Cone12ag1527 475 CDD STKc_TDY_MAPK 24 361 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1527 Cone-Chr12:10784265 Cone3ag1494 Cone-Chr3:33561670 4.10E-293 dispersed
Cone12ag1527 Cone-Chr12:10784265 Cone14ag1014 Cone-Chr14:8491794 1.36E-116 wgd
Cone12ag1527 Cone-Chr12:10784265 Cone8ag1572 Cone-Chr8:11722153 4.70E-258 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81994 PF13041 PPR_2 9.50E-15 CL0020 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1527 - - - 0.0