Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1543 ATGACATCCAAGCCCATCAAGACGGTGCCGGGTAAAGACACGGATACAGTTACAGGTACATATGCTGAGATGAACCTTAAGGCATCAGAATTAGTAGCATCTGCGGAACGTAAAAAGGCTCATGCGAGTCGTCTGGGATGCGATCAGCTGCAAACAAGCTCGACAGGGGGAGCAGTGGCAACATCATGGGCATCAGCCAGTCCCAATTATATTAATAAGAATACTATACCATCTCAAGTCCCAATCTATGGCCAATGGAGTGGAAACGGGTCTCGCTGTGACAGCTTAGAGAGCTCTAGTGCGCCCCTCAAGCCTCACACTGGTGGTGACATACGGTGGGATGCGTTTAACATGGTTTCCAGAGGGTCCCCACTCAATCTGAGCCATTTCCGGCTGCTCAAGCGACTCGGGTATGGGGACATAGGGAGCGTCTATCTGGTAGAACTAAGAGGGACTGATGCCTATTTTGCTATGAAAGTGATGGACAAAGCCTCCCTCGCAAGCAGAAACAAGCTACTGAGAGCACAGACGGAGAGGGAGATACTTGGCCTTCTAGACCATCCATTCTTGCCCACTCTCTACTCCTATTTCGATACTGACAAGTTCTATTGCTTGGTCATGGAGTTCTGCAGTGGGGGGAATCTCCATTCACTGCGTCAGAAGCATCCCAACAAGTATTTTAACGAGGAAGCAGCAAGGTTCTATGCATCCGAAGTCTTGCTGGCGCTGGAGTACCTGCACATGCTAGGCATTGTGTACAGAGACTTGAAACCGGAAAACGTGCTGGTGCGAGACGAAGGTCACATCATGCTCTCGGATTTTGATCTCTCACTGCGCTGCTCTGTGAACCCCATGCTAGTGAAGTCGTCCTCGGTTCATCATGTAAGTAATGGCAGTGGTGGGGCTGGGAGCTTTAATCATTCTAGTCATGACCCGGGGGCCATTCTCGATGATGAATTTGCAGTGCACGGCTGCATGCAGCCGGCCTCAAACTTTCTTCCTCGCATTCTGCCTTCAAAGAAGAACCGCAAATCTAAATCAGATTTCGGGCTCTCTGTGGGAGGGTCCCTCCCAGAACTGATGGCGGAGCCCACAAACGTGCGATCCATGTCATTTGTGGGTACCCACGAGTACTTAGCCCCGGAGATCATCCGAGGAGAGGGTCATGGCAGCGCCGTGGATTGGTGGACGTTTGGGATCTTCTTGTACGAGCTACTGCACGGGACAACTCCCTTCAAGGGTTCCGGGAATCGAGCCACTCTGTTCAACGTTGTAGGACAGCCTTTGAGATTCCCAGAAAATCCACATGTAAGTTTTATTGCGCGGGATCTAATACGTGGGCTTCTGGTGAAGGAGCCGCACAAGCGAATTGCGTACAAAAGGGGCGCCACTGAAATAAAGCAACACCCTTTCTTCGAGGGCGTCAACTGGGCCCTGGTCAGAAGCGCCATGCCTCCTCACATACCTGAGCCCGTAGACTTCTCGCAATTTGCAACCAAAGAGGCGGCCCCTGCAGACAAGAAGATGGCCGATGTTGTGGCAGATACCAACACTACTAGTACTACTACTACGACTTCCAGTAATGATTCTTGTTACATAGTTTTTGAGTACTTTTAG 1617 50.71 MTSKPIKTVPGKDTDTVTGTYAEMNLKASELVASAERKKAHASRLGCDQLQTSSTGGAVATSWASASPNYINKNTIPSQVPIYGQWSGNGSRCDSLESSSAPLKPHTGGDIRWDAFNMVSRGSPLNLSHFRLLKRLGYGDIGSVYLVELRGTDAYFAMKVMDKASLASRNKLLRAQTEREILGLLDHPFLPTLYSYFDTDKFYCLVMEFCSGGNLHSLRQKHPNKYFNEEAARFYASEVLLALEYLHMLGIVYRDLKPENVLVRDEGHIMLSDFDLSLRCSVNPMLVKSSSVHHVSNGSGGAGSFNHSSHDPGAILDDEFAVHGCMQPASNFLPRILPSKKNRKSKSDFGLSVGGSLPELMAEPTNVRSMSFVGTHEYLAPEIIRGEGHGSAVDWWTFGIFLYELLHGTTPFKGSGNRATLFNVVGQPLRFPENPHVSFIARDLIRGLLVKEPHKRIAYKRGATEIKQHPFFEGVNWALVRSAMPPHIPEPVDFSQFATKEAAPADKKMADVVADTNTTSTTTTTSSNDSCYIVFEYF 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10981674 10983418 + Conep12aG0159700.1 Cone12ag1543 450387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1543 538 Gene3D Transferase(Phosphotransferase) domain 1 347 490 - -
Cone12ag1543 538 FunFam serine/threonine-protein kinase D6PK-like 214 281 - -
Cone12ag1543 538 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone12ag1543 538 FunFam Serine/threonine-protein kinase AGC1-5 128 213 - -
Cone12ag1543 538 Pfam Protein kinase domain 131 280 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag1543 538 Pfam Protein kinase domain 347 472 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag1543 538 PANTHER FLIPPASE KINASE 1-RELATED 87 506 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cone12ag1543 538 SMART serkin_6 130 472 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag1543 538 Gene3D Phosphorylase Kinase; domain 1 128 213 - -
Cone12ag1543 538 CDD STKc_phototropin_like 128 493 - -
Cone12ag1543 538 ProSiteProfiles Protein kinase domain profile. 130 472 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag1543 538 Gene3D Transferase(Phosphotransferase) domain 1 214 281 - -
Cone12ag1543 538 SUPERFAMILY Protein kinase-like (PK-like) 127 515 IPR011009 -
Cone12ag1543 538 FunFam Serine/threonine-protein kinase AGC1-7 365 490 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1543 Cone-Chr12:10981674 Cone5ag1793 Cone-Chr5:12725115 5.25E-187 dispersed
Cone12ag1543 Cone-Chr12:10981674 Cone14ag0992 Cone-Chr14:8212095 1.24E-100 wgd
Cone12ag1543 Cone-Chr12:10981674 Cone8ag1613 Cone-Chr8:11935714 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81995 PF02362 B3 1.00E-16 CL0405 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1543 - - - 0.0