Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0001 ATGGACTGGGGTGCAAATAATGCATACAAAACTTTCAAAGATATCGGATTGGGTTCTTCGGAAAAAGGGAATGCTGTTTCTTCTGCTAAACCAAGAAAGAAAACAATGACATCAGTTTATCTCAAGTTTTTCGAGACAGCTCCTGATGGGAAAAGCAGGAGGTGCAAGTTTTGCGGACAGAGCTATTCCATTGCAACAGCCACTGGCAATTTGGGAAGGCACCTTAGTAATCGGCATCCAGGATATGATAAATCAGGGGATGCTGTCTGCAGTTCAGCAGCACAGGCTATCACTGTAGTGAAGAAATCCCAACCTCAAGGGAAATTGCCACAGGTTGATTATGATCATCTTAACTGGTTGCTCATCAAATGGCTCATTTCTTCTTCTCTCCCGCCCTCAACGTTAGAAGGAACTTGGATAGCAAACTCCTATAAGTTTTTGAATCCGTCTATTCATCTATGGACACCTGAAAAGTACAAAGCAGTATTTCGGGAAGTTTTCAGGAGCATGCAGGAAGATGTAAGAACATCTTTAGATCAGGTCTCTTCTAAGCTCTCCATCTCTCTTGATTTGTGGACTTCCTACGAACAAATACATTATATGAGTATCACGTGTCAGTGGATTTCTGAGAACTGGTCTTTCCAGAAGGTGCTTCTTGATATTTGTCACATACCTTATCCTTGTGGGGGTGCTGAGATCTATCATTCCCTAGTAAAGGTTCTCAAGATGTACAATATTGAGAGCCGAATACTTTCATGCACCCATGATAACAGCCAAACTACCGTGCATGCCTGTCATACATTAAAAGAGGACTTGGATAGTCAGAAAGTGGGGCCCTTTTGTTATATCCCATGTGCTGCTCGTACTTTAAATGTGATCATAGATGATGGATTGAGAACTACTAAACCTATAATTTCTAAAATCCGGGAGTTTGTGCTTGAGTTGAATGCTTCCCAGGAGATGTCAGAGGATTTTAGTCAATTGGCAACCGCTTATCAAGAAGGTAATTGGAAATTTCCACTTGATGCTTCAACGCGATGGAGTGGCAATTATCAGATGCTTGAAATAGTGCGCAAGGGTGGTAAGTCTATGGATGCTGTTGTTCGAAAGTATGAAGAGACACTAGGGAGCAGGATGCTTCTTAGCTCAGCAGAAAAGAATGCAGTCAGTATAGTGCATCAATACTTGGAGCCCTTCTATAAAACTACAAATAACATATGCACAAACAAGCTGCCAACGATTGGGCTGGTTCTCTTCTTCATGGATCACATTTCGGAGATGATTGCTGCCTGCAAAGAGGCTCGTCACCATCCGGACTGGCTGAAGGCCGCTGCTGAAGACATGGCCAAGAAATCCCAGAGTTACAGTAATCAGGTTTGCAACGTTTTCACCTACATGACTGCAATTCTAGACCCTCGAATCAAAGGGGAGCTAATTCCGGAGAGTCTCAATTTGGAAAACTATTTGGACGAAGCAAGGACTCATTTCATGAGAAATTATTCCACCTGCCATTTCCCATCCATGGCAAGCGGATACAGTGGTCAGGAGATTGAAGATGGAGGGAATGTCTCCTTTGCAGAGGAAATAGCTCGAAAGAAGCGGAGGGCAAGCATGAGCAGTGCCACAGATGAGCTCACTCAATATTTATCAGAGCCTCCAGCTGCAATACCAACAGACGTTCTGGAGTGGTGGAAGATGAACTATACACGATACCCACGGCTTTCTGTGATGGCCCGAGATTTCTTAGCAGTTCAGGCCACTTCAGTTGTTCCTGATCAACTCTTTTGCGGAAAAGATGATGAGATTGATAAGCAGAGATTTTGTATGCTACATCAAAGCATGCAGGCTCTCCTCTGTATCAGATCATGGACTGAGGGCGGGTTTAAATTGAAATATAAGTCAACAGAGATTGACTACGAGAGGTTGATGGAACTAGCTGCAGCAGCAGCAGCTGATAATACTAGTGCTAGTTGTGACAAAAAACAAAGATGA 1992 43.27 MDWGANNAYKTFKDIGLGSSEKGNAVSSAKPRKKTMTSVYLKFFETAPDGKSRRCKFCGQSYSIATATGNLGRHLSNRHPGYDKSGDAVCSSAAQAITVVKKSQPQGKLPQVDYDHLNWLLIKWLISSSLPPSTLEGTWIANSYKFLNPSIHLWTPEKYKAVFREVFRSMQEDVRTSLDQVSSKLSISLDLWTSYEQIHYMSITCQWISENWSFQKVLLDICHIPYPCGGAEIYHSLVKVLKMYNIESRILSCTHDNSQTTVHACHTLKEDLDSQKVGPFCYIPCAARTLNVIIDDGLRTTKPIISKIREFVLELNASQEMSEDFSQLATAYQEGNWKFPLDASTRWSGNYQMLEIVRKGGKSMDAVVRKYEETLGSRMLLSSAEKNAVSIVHQYLEPFYKTTNNICTNKLPTIGLVLFFMDHISEMIAACKEARHHPDWLKAAAEDMAKKSQSYSNQVCNVFTYMTAILDPRIKGELIPESLNLENYLDEARTHFMRNYSTCHFPSMASGYSGQEIEDGGNVSFAEEIARKKRRASMSSATDELTQYLSEPPAAIPTDVLEWWKMNYTRYPRLSVMARDFLAVQATSVVPDQLFCGKDDEIDKQRFCMLHQSMQALLCIRSWTEGGFKLKYKSTEIDYERLMELAAAAAADNTSASCDKKQR 663
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6455 15096 + Conep13aG0000100.1 Cone13ag0001 450388

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0001 663 Pfam hAT-like transposase, RNase-H fold 407 485 IPR025525 GO:0003677(InterPro)
Cone13ag0001 663 Pfam hAT family C-terminal dimerisation region 544 623 IPR008906 GO:0046983(InterPro)
Cone13ag0001 663 PANTHER ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4 20 624 IPR052035 -
Cone13ag0001 663 SMART bed5 35 82 - -
Cone13ag0001 663 Pfam BED zinc finger 39 80 IPR003656 GO:0003677(InterPro)
Cone13ag0001 663 SUPERFAMILY Ribonuclease H-like 172 625 IPR012337 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0001 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0001 Cone-Chr13:6455 Cone19ag0002 Cone-Chr19:35433 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g372 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0001 Cone19ag0002 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007314 0 3 0 0 0 1 2 1 1 1 1 1 1 1 1 4 1 2 2 1 1 1 1 1 1 1 1 2 3 1 37