Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0009 ATGGATTGGGATGAAGAAGATAATGTCTTCTACGGAACGCCGATAGAGCGTGAGGAGGAGATCACCAGCCGGAAAAAGAAGGCTGTAGCTGAAGCATCTGGTCAGCTGCGAAGCCTAGTTCCGTGGAAACAAGAGGTTACTGATGAGGAAGGACGAAGAAGATTTCATGGGGCATTTACAGGAGGATTCTCTGCTGGTTATTACAATACAGTCGGTTCTAAAGAAGGTTGGACACCTCAGTCATTTACATCATCCCGCAAGGACAGAGCTGAAGTCCAACAGCAGAGCATTTTAAACTTCTTAGATGAAGATGAGAAAGCTGACTTCGAAGGTCGATCTTTAGGAACATCTTCACAGTTTGATACATTTGGATTTACAGCCATGGAAGTTGCTCGAAATCAAGCTGAAAAGGCGCAACAACAGAGAGCATCAGCTATTCCAGGACCTGTTCCTGATGAATTAATAGTACCACCTGCAGAGTCTATAGGTGTAAAATTGCTTTTGAAGATGGGATGGAGGCATGGGCGTTCAATTAAGGGTTCACAAGCTAATTCTCTCTATGATGCCCGCAGGGAAGCTCGGCGAGCTCTCTTGGCATTTTCTTCAGGTGATGTAAAAGCACATCCTACAGACCCTGAACCACTTCCAGCTAACACTGATACTGCTGTCGTGCAGCCTGCTACTGATGATGTCCACTCTTCCCAAAGCACACCGGGTTATGTGATCAACCCAAAGCAGGACTTCTATGGGTTAGGTTTTGATCCTTATAAAAATGCTCCGGAGTTTAGAGAAAAGAAAAGAGCACACATAGCCGGGAATCAAGACTCTGGTCATAGAAAAGCTTTTCCAACGAAAGAAAATCATTTTGGTTTCAAGTCTGGAAAGATTGCTCCTGGCTTTGGCATTGGAGCACTCGAAGAACTTGATGCTGAAGATGAGGATGTTTATGCCTCTGCATATGACTTTGAGGAGAAGTATGTACAAGAAATCGATGAGCCTTCCAGATCGATCCTGGATGGTAAGCAAAAGTTTGCAGATGGGAAGCAAAAGCTGATTGGAAACAAACAGGACGTTTTACTCGGCTTTAGAGTTGCATCAAATTCAGACTATCAGTTGGATAGATTCTCCGCCCCTGTAGTTCCTAAGGATTTTGTTCCTCACCACACCTTTTCTGGGACTCTAGAGACTGACTACAAGCTCTCTGATACCCCTCCCAAAGTGGTCCCTCCTCCTGACGACATTAATCTAAAAATCTTAATCGATGGAGTTTCAACCTTAGTAACTCGATGTGGAAAATTATTTGAGGATCTCTCCAGAGAGAAGAATCAGACAAATCCATTGTTTAGTTTTCTGAATGGAGGAAATGGCCATGAGTATTATACCAGGAAGCTTTGGGAGGAGAGCCGGAAAAGCATGGATCAAACCAAGCATGGATTTGATGGTAAGTTATCTCCACGTATGGAGAAGATGACTGCAGAGACTCGTGGGAAAATCCTTAGGGAGAGACCATTGGAGAAAAGCTCAAAAGGTTCCAGTTCATCTGTCACCTCTGACGTGCAGCTCCAGTTCAATCTTTCTGATACTTTCACTAGACCTGCATCATTCAGTGAATTGCCAGAGGCTGTCAAGCCTTTTAAAGATGATCCCGCAAAGCAAGAAAGATTTGAATGCTTTCTTAAGGAGAAGTACCAAGGGGGGCTTCGCTCAACAGATTCTGGTGGAGCTAGTTACATGTCAGAAGCAGCTCGTGCTCGTGAGAGGTTGGACTTTGAAGCTGCAGCGGAGATAATAGAGAAAGGAAAACACGGGAAGCTCTCTTACCAACACTTGGTGGATTTTTCTGCACCTGAGGGGATGCAATTTACTCCTGGTGGAGTTGAGAATGCTAAAGAAGCAAAAGTGGAAGACATGATTGCAGAGAAAACATACCCAAACCGGGAAGAATATCAGTGGCGCCCTTCACCAGTTCTCTGCAAACGCTTTGATCTCAGTGATCCTTATATGGGGAAGCCACCACCGCCTCCACGAGTGAGAAGCAAGATAGATACGCTCATTTTTACGGCAGATTCTGTCAAAATCAACAAGCCAGAAGCCTCTTCAAATAAGGATTCAGTTACTATGCCTCAATCCGATACTCGAGGAATGGGAAATGATGCAGTTGGGAAGGACAATGAAGAAGTGATTGAAGTTGAAAATGTAGAGAGGCCAGTTGATCTTTATAAGGCTATTTTCTCCGATGACTCCGATGATGAAGAGGATGCCTTTCTTCTCAACAAAATGGAGGATCCCGAAAAGAATATGGAAGTGGCTAACACAACATTAAACCGTTTGATTGCGGGCGACTTTTTGGAATCCTTGGGTAAAGAACTAGGCTTGGAGGTGCCCCCTTCATTGGACAAAGTACAAATCCGGGATCCTGAAAAAGAAGCTGCTGATATCCGCCCAGTTGAAGAGAGTTTTTCTGCTCCAGACTTTGGACTAGGAAGCAGCACAAAAACCGTTCGAGATGGAAGATATGAAGAAAATGAACTCATTCATGGTAATTCTGCAAGAAGTGGTAGTAAATATGTGGATGGAGATTTGTCAAAGAATAAATTGGGGAAAGTTCTTGTTGACAATGTATATCCAGAGGATAGAGAAATTAAGAGACATTCAAGGAGTCGTCATGATCGGAGTGGCAATTCGTCATCAGAGAATGAAAGGAGCAAAAAAGGGTCTAGGCAGCATCGATATAGCAGTGATTCAGAGCATGGCTCATTCAATGAGGATCGAGATGAATACCATTCAAGGTCAAACAGGAGAAAGAAAAGAACTTCTCGAGAAAAGAGTGGAAGCGGAAAAGAATCAAAACATCATAAGCACAGGCGCAGGGACCATGGAAAGAGAGAGAGGTAA 2895 43.9 MDWDEEDNVFYGTPIEREEEITSRKKKAVAEASGQLRSLVPWKQEVTDEEGRRRFHGAFTGGFSAGYYNTVGSKEGWTPQSFTSSRKDRAEVQQQSILNFLDEDEKADFEGRSLGTSSQFDTFGFTAMEVARNQAEKAQQQRASAIPGPVPDELIVPPAESIGVKLLLKMGWRHGRSIKGSQANSLYDARREARRALLAFSSGDVKAHPTDPEPLPANTDTAVVQPATDDVHSSQSTPGYVINPKQDFYGLGFDPYKNAPEFREKKRAHIAGNQDSGHRKAFPTKENHFGFKSGKIAPGFGIGALEELDAEDEDVYASAYDFEEKYVQEIDEPSRSILDGKQKFADGKQKLIGNKQDVLLGFRVASNSDYQLDRFSAPVVPKDFVPHHTFSGTLETDYKLSDTPPKVVPPPDDINLKILIDGVSTLVTRCGKLFEDLSREKNQTNPLFSFLNGGNGHEYYTRKLWEESRKSMDQTKHGFDGKLSPRMEKMTAETRGKILRERPLEKSSKGSSSSVTSDVQLQFNLSDTFTRPASFSELPEAVKPFKDDPAKQERFECFLKEKYQGGLRSTDSGGASYMSEAARARERLDFEAAAEIIEKGKHGKLSYQHLVDFSAPEGMQFTPGGVENAKEAKVEDMIAEKTYPNREEYQWRPSPVLCKRFDLSDPYMGKPPPPPRVRSKIDTLIFTADSVKINKPEASSNKDSVTMPQSDTRGMGNDAVGKDNEEVIEVENVERPVDLYKAIFSDDSDDEEDAFLLNKMEDPEKNMEVANTTLNRLIAGDFLESLGKELGLEVPPSLDKVQIRDPEKEAADIRPVEESFSAPDFGLGSSTKTVRDGRYEENELIHGNSARSGSKYVDGDLSKNKLGKVLVDNVYPEDREIKRHSRSRHDRSGNSSSENERSKKGSRQHRYSSDSEHGSFNEDRDEYHSRSNRRKKRTSREKSGSGKESKHHKHRRRDHGKRER 964
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 30296 50126 + Conep13aG0000900.1 Cone13ag0009 450396

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0009 964 SMART surpneu2 417 469 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Cone13ag0009 964 Pfam Surp module 420 466 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Cone13ag0009 964 MobiDBLite consensus disorder prediction 696 713 - -
Cone13ag0009 964 MobiDBLite consensus disorder prediction 802 964 - -
Cone13ag0009 964 Pfam Protein of unknown function (DUF1604) 41 120 IPR011666 GO:0006397(InterPro)
Cone13ag0009 964 MobiDBLite consensus disorder prediction 947 964 - -
Cone13ag0009 964 MobiDBLite consensus disorder prediction 696 720 - -
Cone13ag0009 964 Gene3D Surp module 386 473 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Cone13ag0009 964 ProSiteProfiles SURP motif repeat profile. 419 461 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Cone13ag0009 964 MobiDBLite consensus disorder prediction 872 932 - -
Cone13ag0009 964 SUPERFAMILY Surp module (SWAP domain) 395 469 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Cone13ag0009 964 PANTHER G PATCH DOMAIN-CONTAINING PROTEIN 1 2 957 - GO:0003723(PANTHER)|GO:0005634(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0009 K13123 - - rcu:8264553 1108.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1866 Cone-Chr4:13371964 Cone13ag0009 Cone-Chr13:30296 9.91E-06 dispersed
Cone13ag0009 Cone-Chr13:30296 Cone19ag0008 Cone-Chr19:62907 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g386 . . . Bda15g00649 Bpe12g00504 . . . . . . . . . Sed12g2048 . . Bhi02g00020 Tan09g1963 Cmetu02g0079 . . . . Cla06g01499 Cam06g1652 Cec06g1712 Cco06g1710 Clacu06g1618 Cmu06g1567 Cre06g2379 . . Cone13ag0009 Cone19ag0008 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00349 . Cme02g01780
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009521 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 33