Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0018 ATGGCTTTCGTGGCGCCACCGCGCTTCCGCCATCACCACCACCAACCTCCGGCTATTTTCAAAACCCCTCCAAATTGTCGTCTCTTTCTCTCTACTTTCCATCCCAGATCATTGTCTTTTTCTTCCCCTGCAAAAACCCTCCAATCAAATTCTTCTTCCTCTCTATCCGTCATCAGCAACCCCACTCCCCACGTCTCTCCTATCCAACACATTCACCATCTCTGCAACTCTGGAAGCCTCACTGAAGCTCTCACTCTTCTCCAAAACCACTGTAACGACGCCAATCTCGATCCGCTCCTCAAGAAAGAAGCCATTAATGCTGTGCTTCAAGCTTGCGGGCACCATAAAGACATCCACACAGGTCGAAAAGTCCATGAGATCCTCTCTCTCTTGACCCAATTCAGAAATGACTTTGTTCTTCACACCCGTCTCATCACAATGTACTCCTCTTGCGGTTACCCTCTGGATTCTCGATCAGTTTTCGATCATTTACAGAGGAAGAATCTGTTCGTTTGGAACGCACTTATTAGTGGGTACACGAGAAATGAGCTCTACGACAAAGCGATTCGGACATTTATAGAATTGATTTCTGAAACAGAGTTTCAACCTGATAACTTCACATTGCCTTGTGTAGTTAAGGCTTGTGCTGGGAATTTTGATTTTTGTTTGGGAAGATCGATTCATGGGATAGCAGTGAAGTTGGATTTGATGATGACTGATGTGTTTGTTGGTAATTCATTGATTTCAATGTATGGGAAGTGTGGATTGATTGAAGATGCATTTAAGTTGTTTGATTTGATGCCTGAAAGAAACTTGGTTTCTTGGAACTCAATGATTTGTGGCTTCTCTGAAAATGGGTTTTCTCAACAGTGCTATGATCTCCTTAAGACTATTTTACAAGGTGAATTGAGCTTCAAACCAGACGTTGCTACATTAGTAACTCTGTTACCAGTTTGTGCTGAGGAAAGAAATTTGGACTTGGGGGTTTTAATTCATGGAATGGCAGTCAAATTAGGGCTTAGTGAGGAGTTAATGGTGAACAATGCATTGACTGATATGTACTCAAAATGTGGGTACTTAACAGAAGCCGTGATTTTATTCGATAAGAACGATAACAAGAATGCGGTTTCTTGGAATTCCATGATTGCAGCTTACTCTAGAGAAGGCGACATATGTAGAACATTTGATCTCTTGAGAAAGATGCAGATCATTGAAGATGACAATTTGATGATCGATGATGTCACCATTTTGAACGTGTTACCGACTTGTTTGGAAGATTCAGAATTGGTAAACTTGAAAGAACTTCATGGATATTCAATTAGACACGGGCTCTTACTATCTGATGAGTTGATAAAAAATGCCTTTGTTGCAGCCTATTCAAAATGCGGGTCCCTAGATTCTGCTCAGCATGTTTTTTCAAGTATTAAGAACAAAACAGTGAGCTCTTGGAATGCACTTATTGGTGGGCATGCACAAAATGGGAATCCAAGAAAAGCTTTAGATTTTTATCTTGAAATGAAAAATTCAGGCATTGATCCAGACTTGTTTAGTCTGAGTAGCTTGCTTTTAGCTTGTTCCCATCTGAAATTTCTTCATTCTGGGGAAGAAGTACACGGATTTGTGGTAAGAAATGGGTTAGAAATGGATTCATTCATTGCTATTTCACTACTATCACTCTATATCCAATGCGGAAACTTATCATCTGCAAGGATTCTGTTCGATAAGACCGGAGACAAAAATCTAGTGAGCTGGAATGCAATGGTTTCTGGGTATTCACAGAACAGACTTCCAGATGAAGCCATAGATCTCTTCCGAAGAATGCTTTCCGATGGCTTTAAACCATATGAGATTGCTACGATGAGTGTATTAGGGGCTTGTTCACAGCTTTCTGCTTTGCGTTTGGGAAGAGAACTCCATTGTTTTGCTTTGAAAGCTCGCCTAACAGATGACATTTTTGTTAATTGTTCCCTAATGGATATGTATGCGAAAAGCGGTTGCATAGAACAATCTCAAAGGGTATTTGATGGGTTGAAGGAAAAAGATGTGGCTTCATGGAATGTTATGATTGTAGGATATGGAGTTAATGGACATGGCAACAAGGCCATAGAGCTTTTTGAAGAAATGCAGAAACTACACCAGAAAAATCCTGATTGTCTTACATTTGTGGGAATTTTAATGGCATGTAGCCATGCTGGGTTGGTTACTGATGGACTAAAATATCTGAACCAGATGCAGTGTTTATACAAGGTAGAAGCACAGCTCGAGCATTATGCTTGTGCAGTGGATATGCTTGGTCGCGCTGGAAGATTTGATAAAGCTCTAGAAATTATAGAAGAGATGCCTGAAGAACCCGATGCTGGGATCTGGAGCTCATTGCTCAGTTCTTCCAGAACTTATGGGGATTTGAATGTCGGGCTAAAGGCTGCAGAAAGACTACTTGAATTGGAACCGAACAAAGCAGATAATTATGTTTTGCTGTCTAATTTATATGCAATATCAGAGAATTGGGATCAAGTGAGAAGAGTGAGACAGAGAATGAAAAATACTGGTCTCTATAAAGAAGCCGGCACTAGTTGGATTGAAATTAAAGGCATAGTTCATCGCTTTGTTGCTGGAGACAATTTGTTGCCAGAATCAGAAGAAATAAGAGAGATGTGGGAGAGATTGGAGGAGAAGATTAGTGAAATGGGTTACAAACCAAACGTTAGCTGTGTTCTTCATGAACTTGAAGAAGAGGAAAAGAAGCAGGTATTGAGAAGGCACAGTGAGAAGCTTGCGATTTCTTTCGGGTTGTTGAAGACAAGTAAAGGCACAACACTTCGAGTCTGCAAAAACTTGCGCATATGTTTAGATTGTCATGACGCAGCCAAGTTTATATCAAAGTCCCTGGAAAGGGATATAGTGGTTAGAGATAACAAGCGATTCCATCACTTCAGAAATGGTTTCTGTTCTTGTGGAGATTATTGGTAG 2970 40.57 MAFVAPPRFRHHHHQPPAIFKTPPNCRLFLSTFHPRSLSFSSPAKTLQSNSSSSLSVISNPTPHVSPIQHIHHLCNSGSLTEALTLLQNHCNDANLDPLLKKEAINAVLQACGHHKDIHTGRKVHEILSLLTQFRNDFVLHTRLITMYSSCGYPLDSRSVFDHLQRKNLFVWNALISGYTRNELYDKAIRTFIELISETEFQPDNFTLPCVVKACAGNFDFCLGRSIHGIAVKLDLMMTDVFVGNSLISMYGKCGLIEDAFKLFDLMPERNLVSWNSMICGFSENGFSQQCYDLLKTILQGELSFKPDVATLVTLLPVCAEERNLDLGVLIHGMAVKLGLSEELMVNNALTDMYSKCGYLTEAVILFDKNDNKNAVSWNSMIAAYSREGDICRTFDLLRKMQIIEDDNLMIDDVTILNVLPTCLEDSELVNLKELHGYSIRHGLLLSDELIKNAFVAAYSKCGSLDSAQHVFSSIKNKTVSSWNALIGGHAQNGNPRKALDFYLEMKNSGIDPDLFSLSSLLLACSHLKFLHSGEEVHGFVVRNGLEMDSFIAISLLSLYIQCGNLSSARILFDKTGDKNLVSWNAMVSGYSQNRLPDEAIDLFRRMLSDGFKPYEIATMSVLGACSQLSALRLGRELHCFALKARLTDDIFVNCSLMDMYAKSGCIEQSQRVFDGLKEKDVASWNVMIVGYGVNGHGNKAIELFEEMQKLHQKNPDCLTFVGILMACSHAGLVTDGLKYLNQMQCLYKVEAQLEHYACAVDMLGRAGRFDKALEIIEEMPEEPDAGIWSSLLSSSRTYGDLNVGLKAAERLLELEPNKADNYVLLSNLYAISENWDQVRRVRQRMKNTGLYKEAGTSWIEIKGIVHRFVAGDNLLPESEEIREMWERLEEKISEMGYKPNVSCVLHELEEEEKKQVLRRHSEKLAISFGLLKTSKGTTLRVCKNLRICLDCHDAAKFISKSLERDIVVRDNKRFHHFRNGFCSCGDYW 989
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 114829 118068 + Conep13aG0002000.1 Cone13ag0018 450405

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0018 989 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 224 323 - -
Cone13ag0018 989 Pfam PPR repeat 245 271 IPR002885 -
Cone13ag0018 989 Pfam PPR repeat 376 402 IPR002885 -
Cone13ag0018 989 Pfam PPR repeat 761 782 IPR002885 -
Cone13ag0018 989 Pfam PPR repeat 273 296 IPR002885 -
Cone13ag0018 989 Pfam PPR repeat 171 197 IPR002885 -
Cone13ag0018 989 Pfam PPR repeat 582 612 IPR002885 -
Cone13ag0018 989 Gene3D Tetratricopeptide repeat domain 656 958 IPR011990 GO:0005515(InterPro)
Cone13ag0018 989 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 168 203 IPR002885 -
Cone13ag0018 989 SUPERFAMILY TPR-like 560 840 IPR011990 GO:0005515(InterPro)
Cone13ag0018 989 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 580 614 IPR002885 -
Cone13ag0018 989 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 479 513 IPR002885 -
Cone13ag0018 989 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 240 274 IPR002885 -
Cone13ag0018 989 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 374 404 IPR002885 -
Cone13ag0018 989 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 305 424 IPR050421 -
Cone13ag0018 989 Pfam E motif 799 861 IPR046848 -
Cone13ag0018 989 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 681 715 IPR002885 -
Cone13ag0018 989 Pfam PPR repeat family 479 526 IPR002885 -
Cone13ag0018 989 Pfam PPR repeat family 680 728 IPR002885 -
Cone13ag0018 989 FunFam Pentatricopeptide repeat-containing protein chloroplastic 536 638 - -
Cone13ag0018 989 FunFam Pentatricopeptide repeat-containing protein chloroplastic 432 535 - -
Cone13ag0018 989 FunFam Pentatricopeptide repeat-containing protein 655 925 - -
Cone13ag0018 989 Gene3D Tetratricopeptide repeat domain 532 634 IPR011990 GO:0005515(InterPro)
Cone13ag0018 989 Gene3D Tetratricopeptide repeat domain 68 221 IPR011990 GO:0005515(InterPro)
Cone13ag0018 989 Gene3D Tetratricopeptide repeat domain 438 531 IPR011990 GO:0005515(InterPro)
Cone13ag0018 989 Gene3D Tetratricopeptide repeat domain 231 328 IPR011990 GO:0005515(InterPro)
Cone13ag0018 989 Gene3D Tetratricopeptide repeat domain 329 434 IPR011990 GO:0005515(InterPro)
Cone13ag0018 989 Pfam DYW family of nucleic acid deaminases 897 989 IPR032867 GO:0008270(InterPro)
Cone13ag0018 989 NCBIfam pentatricopeptide repeat 482 514 IPR002885 -
Cone13ag0018 989 NCBIfam pentatricopeptide repeat 245 272 IPR002885 -
Cone13ag0018 989 NCBIfam pentatricopeptide repeat 582 614 IPR002885 -
Cone13ag0018 989 NCBIfam pentatricopeptide repeat 684 710 IPR002885 -
Cone13ag0018 989 NCBIfam pentatricopeptide repeat 757 782 IPR002885 -
Cone13ag0018 989 NCBIfam pentatricopeptide repeat 171 204 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0018 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0018 Cone-Chr13:114829 Cone5ag1389 Cone-Chr5:8556942 1.87E-200 dispersed
Cone14ag0413 Cone-Chr14:1907120 Cone13ag0018 Cone-Chr13:114829 1.10E-130 dispersed
Cone19ag0027 Cone-Chr19:199939 Cone13ag0018 Cone-Chr13:114829 2.14E-78 dispersed
Cone19ag0773 Cone-Chr19:6302609 Cone13ag0018 Cone-Chr13:114829 2.98E-89 dispersed
Cone1ag0275 Cone-Chr1:1856521 Cone13ag0018 Cone-Chr13:114829 2.71E-129 dispersed
Cone1ag0775 Cone-Chr1:53821391 Cone13ag0018 Cone-Chr13:114829 1.14E-24 dispersed
Cone7ag1379 Cone-Chr7:9955548 Cone13ag0018 Cone-Chr13:114829 2.75E-131 dispersed
Cone19ag0026 Cone-Chr19:199263 Cone13ag0018 Cone-Chr13:114829 4.83E-97 transposed
Cone13ag0018 Cone-Chr13:114829 Cone16ag0251 Cone-Chr16:2742996 2.22E-95 wgd
Cone13ag0018 Cone-Chr13:114829 Cone19ag0025 Cone-Chr19:197421 2.39E-289 wgd
Cone13ag0018 Cone-Chr13:114829 Cone7ag0462 Cone-Chr7:2098988 2.72E-177 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g410 . . . . . . . . . . Cma10g00273 . . . . . . Bhi02g00048 . . . . . . Cla06g01516 . . . . . . . . Cone13ag0018 . . . . . . . . . . . . . . Cmo10g00292 . . . . . . . . . . . . . . . . . . . . . . . Chy02g02418 Cme02g01797