Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0026 ATGGAGTCTTGGAGCAATGTTTCTGAAGGAAAGAGGTTCCGGTTTGACGAAATCAATTCACCTGCAAATTCACTGGCAAGAAATAAGGTTTCCTTTTCAAACTGGGAATCCCAAAATTCATATAGTTCTGGCCGTAGCAGTACCAATATTGATAATCAAGCTCAACAACATATTGATAATGATCTGGCTAGTAGTAGTAAGGTTATGCCTGCATTTCCTGGCGAAGACGACTTGATCTCTTCAAAGATGTCAGGCTCTATAGGTGACTCTAGTAGTTGGGATTCATCTCTTATCTGTTTGAATCTTGGGAGATTTTCCGGTCATAAGACCACTCCTCCTCCTCCGATTTGGTCATCTTCGGATTCTTCTTCCAAGCCGCCTTCAAAAAGGGTAAGAGGCTCTGGTTTAAATACTCAAGCTTATTTCTGCCAAGTTTATGGGTGTAATAAAGATCTCTGCTCTTCTAAAGACTACCATAAGAGGCATAAGGTTTGTGAGATGCACTCCAAAACGGCTAGAGTTATTGTCAATGGATTTGAACAAAGGTTCTGTCAGCAATGTAGCAGGTTTCACTTGCTAGCTGAATTTGACGATGGTAAGCGCAGCTGCCGGAAACGGCTTGCAGGCCATAATGAACGTAGGAGAAAGCCTCTACTTGGTACAGGCTCTGGAAAATCGCTTCATCCATATGATAATATCAGTTTTCCATCAACAAAAGTATTGGCTTCAACCTCATTTATTTGCCAAGACATCCTACTTAGTCCCCCTTTTCTTCTGCATACAAACAAGTTCCCAACAAATGATTGGTCCAGCCAAATAAAAGTCGAACAAGACAGCAACAAGAGTACTTTAGGGCCTCCTCTACATTGCAATGTTGGAATGCAAGTTCCAGGTTATTTGGACAAGGTTACAAATACTGGTCAATACGCTCTTAACTCTAACTCAAGTGCAGATTATATGTTCAATGAAGCCTCAATAGGGAGTGAAGGGTTGAGCTTTTTCGATACATCATGTGTACCGGTCTCTGGATGTGCTCTCTCTCTTCTGTCATCTCATCATCGATCACAAAACTCCTCAACCCATTCCTCCAAAATTGGTATAGGTCTCCCTAAGTTAGTCATGCCTGATATCGGTCACAGTCAAACTAATTACGGCCTTGCTTCATCTGGAAGTAGTGATGTGATCAACTTTGAAACCAAGGACCAGATTTCACATGAAACTAGTCCTACCATTGACTTGCTGCAACTTTCATCGCAGCTTGAACGAGTGGAGCATCAGAAGCAGTCGGGCACCGTGCGGTGGGTCCCACAATCCTCTTGA 1320 42.58 MESWSNVSEGKRFRFDEINSPANSLARNKVSFSNWESQNSYSSGRSSTNIDNQAQQHIDNDLASSSKVMPAFPGEDDLISSKMSGSIGDSSSWDSSLICLNLGRFSGHKTTPPPPIWSSSDSSSKPPSKRVRGSGLNTQAYFCQVYGCNKDLCSSKDYHKRHKVCEMHSKTARVIVNGFEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPLLGTGSGKSLHPYDNISFPSTKVLASTSFICQDILLSPPFLLHTNKFPTNDWSSQIKVEQDSNKSTLGPPLHCNVGMQVPGYLDKVTNTGQYALNSNSSADYMFNEASIGSEGLSFFDTSCVPVSGCALSLLSSHHRSQNSSTHSSKIGIGLPKLVMPDIGHSQTNYGLASSGSSDVINFETKDQISHETSPTIDLLQLSSQLERVEHQKQSGTVRWVPQSS 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 172955 175342 + Conep13aG0002800.1 Cone13ag0026 450413

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0026 439 FunFam Squamosa promoter-binding-like protein 14 134 204 - -
Cone13ag0026 439 SUPERFAMILY SBT domain 141 220 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone13ag0026 439 MobiDBLite consensus disorder prediction 112 133 - -
Cone13ag0026 439 Gene3D - 134 204 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone13ag0026 439 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 57 374 IPR044817 GO:0003677(InterPro)
Cone13ag0026 439 MobiDBLite consensus disorder prediction 110 133 - -
Cone13ag0026 439 ProSiteProfiles Zinc finger SBP-type profile. 140 217 IPR004333 GO:0003677(InterPro)
Cone13ag0026 439 Pfam SBP domain 143 216 IPR004333 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0026 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0026 Cone-Chr13:172955 Cone16ag0009 Cone-Chr16:97352 1.07E-37 dispersed
Cone13ag0026 Cone-Chr13:172955 Cone16ag0222 Cone-Chr16:1572811 1.71E-78 wgd
Cone13ag0026 Cone-Chr13:172955 Cone19ag0035 Cone-Chr19:246608 7.16E-261 wgd
Cone13ag0026 Cone-Chr13:172955 Cone2ag0792 Cone-Chr2:33927478 1.22E-78 wgd
Cone13ag0026 Cone-Chr13:172955 Cone6ag0516 Cone-Chr6:2580897 3.37E-40 wgd
Cone13ag0026 Cone-Chr13:172955 Cone9ag0529 Cone-Chr9:2537830 9.42E-41 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g11 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone2ag0792 Cone16ag0222 Cone13ag0026 Cone19ag0035 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0029997 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44560 PF00010 HLH 9.30E-15 No_clan Cone TF