Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0026 ATGGAGTCTTGGAGCAATGTTTCTGAAGGAAAGAGGTTCCGGTTTGACGAAATCAATTCACCTGCAAATTCACTGGCAAGAAATAAGGTTTCCTTTTCAAACTGGGAATCCCAAAATTCATATAGTTCTGGCCGTAGCAGTACCAATATTGATAATCAAGCTCAACAACATATTGATAATGATCTGGCTAGTAGTAGTAAGGTTATGCCTGCATTTCCTGGCGAAGACGACTTGATCTCTTCAAAGATGTCAGGCTCTATAGGTGACTCTAGTAGTTGGGATTCATCTCTTATCTGTTTGAATCTTGGGAGATTTTCCGGTCATAAGACCACTCCTCCTCCTCCGATTTGGTCATCTTCGGATTCTTCTTCCAAGCCGCCTTCAAAAAGGGTAAGAGGCTCTGGTTTAAATACTCAAGCTTATTTCTGCCAAGTTTATGGGTGTAATAAAGATCTCTGCTCTTCTAAAGACTACCATAAGAGGCATAAGGTTTGTGAGATGCACTCCAAAACGGCTAGAGTTATTGTCAATGGATTTGAACAAAGGTTCTGTCAGCAATGTAGCAGGTTTCACTTGCTAGCTGAATTTGACGATGGTAAGCGCAGCTGCCGGAAACGGCTTGCAGGCCATAATGAACGTAGGAGAAAGCCTCTACTTGGTACAGGCTCTGGAAAATCGCTTCATCCATATGATAATATCAGTTTTCCATCAACAAAAGTATTGGCTTCAACCTCATTTATTTGCCAAGACATCCTACTTAGTCCCCCTTTTCTTCTGCATACAAACAAGTTCCCAACAAATGATTGGTCCAGCCAAATAAAAGTCGAACAAGACAGCAACAAGAGTACTTTAGGGCCTCCTCTACATTGCAATGTTGGAATGCAAGTTCCAGGTTATTTGGACAAGGTTACAAATACTGGTCAATACGCTCTTAACTCTAACTCAAGTGCAGATTATATGTTCAATGAAGCCTCAATAGGGAGTGAAGGGTTGAGCTTTTTCGATACATCATGTGTACCGGTCTCTGGATGTGCTCTCTCTCTTCTGTCATCTCATCATCGATCACAAAACTCCTCAACCCATTCCTCCAAAATTGGTATAGGTCTCCCTAAGTTAGTCATGCCTGATATCGGTCACAGTCAAACTAATTACGGCCTTGCTTCATCTGGAAGTAGTGATGTGATCAACTTTGAAACCAAGGACCAGATTTCACATGAAACTAGTCCTACCATTGACTTGCTGCAACTTTCATCGCAGCTTGAACGAGTGGAGCATCAGAAGCAGTCGGGCACCGTGCGGTGGGTCCCACAATCCTCTTGA 1320 42.58 MESWSNVSEGKRFRFDEINSPANSLARNKVSFSNWESQNSYSSGRSSTNIDNQAQQHIDNDLASSSKVMPAFPGEDDLISSKMSGSIGDSSSWDSSLICLNLGRFSGHKTTPPPPIWSSSDSSSKPPSKRVRGSGLNTQAYFCQVYGCNKDLCSSKDYHKRHKVCEMHSKTARVIVNGFEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPLLGTGSGKSLHPYDNISFPSTKVLASTSFICQDILLSPPFLLHTNKFPTNDWSSQIKVEQDSNKSTLGPPLHCNVGMQVPGYLDKVTNTGQYALNSNSSADYMFNEASIGSEGLSFFDTSCVPVSGCALSLLSSHHRSQNSSTHSSKIGIGLPKLVMPDIGHSQTNYGLASSGSSDVINFETKDQISHETSPTIDLLQLSSQLERVEHQKQSGTVRWVPQSS 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 172955 175342 + Conep13aG0002800.1 Cone13ag0026 450413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0026 439 FunFam Squamosa promoter-binding-like protein 14 134 204 - -
Cone13ag0026 439 SUPERFAMILY SBT domain 141 220 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone13ag0026 439 MobiDBLite consensus disorder prediction 112 133 - -
Cone13ag0026 439 Gene3D - 134 204 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone13ag0026 439 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 57 374 IPR044817 GO:0003677(InterPro)
Cone13ag0026 439 MobiDBLite consensus disorder prediction 110 133 - -
Cone13ag0026 439 ProSiteProfiles Zinc finger SBP-type profile. 140 217 IPR004333 GO:0003677(InterPro)
Cone13ag0026 439 Pfam SBP domain 143 216 IPR004333 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0026 Cone-Chr13:172955 Cone16ag0009 Cone-Chr16:97352 1.07E-37 dispersed
Cone13ag0026 Cone-Chr13:172955 Cone16ag0222 Cone-Chr16:1572811 1.71E-78 wgd
Cone13ag0026 Cone-Chr13:172955 Cone19ag0035 Cone-Chr19:246608 7.16E-261 wgd
Cone13ag0026 Cone-Chr13:172955 Cone2ag0792 Cone-Chr2:33927478 1.22E-78 wgd
Cone13ag0026 Cone-Chr13:172955 Cone6ag0516 Cone-Chr6:2580897 3.37E-40 wgd
Cone13ag0026 Cone-Chr13:172955 Cone9ag0529 Cone-Chr9:2537830 9.42E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44560 PF00010 HLH 9.30E-15 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0026 - - - 0.0