Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0028 ATGGAAGTTTCAACTACAGATCTCAAATGCATTACTTTAGCTCTGCTATTGTTCATGGTTTTCTCCCCCATAAGGGCTTTTGATCCTTTGGATCCAAATGGAAACATAACAATCAAATGGGATGTGGTTTCTTGGACTGCAGATGGTTATGTAGCCGCGGTGATAATGAACAACTTCCAAATGTATCGACATATAATAACACCAGGGTGGACACTAAGTTGGTCATGGGCTAAAAAGGAAGTGATATGGTCAATGGTAGGAGCACAAACAACAGAGCAAGGAGACTGTTCCAAATTCAAAGGGAACGTCCCACATTGTTGTAAGAAAACGCCAACTGTAGTCGACTTACTCCCTGGTGTTCCTTACAACCAGCAGTTCTTCAATTGCTGCAAAGGTGGCGTTCTGTCTTCTTGGGGACAAGATCCTTCTTCCTCTGTCTCCGCCTTTCAGATTAGTGTTGGGCTTGCCGGAACTTCAAACAAAACTGTGAAATTGCCCCAGAATTTCACTCTTCTTGGCCCCGGACCAGGCTACACTTGTGGCCCAGCAAAAATCGTGCCTTCTACGGTCTATCTTACTCCGGATAAGAGGAGAAAAACTCAAGCTCTTATGACATGGAATGTGACATGTACCTATTCACAATTTCTCGCCTCAAAGAACCCAAGCTGTTGTGTTTCCTTCTCTTCTTTCTACAATGAAACCATCACTCCTTGCCCATCTTGTGCTTGTGGCTGCCAAAACAAGAAAAACTGCATAATGAGTGACTCAAAGCTATTACAGAAGGCAGGAATAAACACACCCAGAAAAGACAGTGCAGCATTACTACAATGCACACATCATATGTGTCCTGTAAGAGTCCATTGGCATGTCAAGGTCAATTACAAAGATTATTGGCGTGTGAAGATTGCTATCACTAACTTCAACTATCGCTTGAACTACACACTTTGGACACTAGCTGTCCAACACCCTAATCTCAACAATGTTTCCCAAGTTTTCAGCTTTGACTACAAGCCCCTTGTTCCCTATGCATCCATCAATGATACTGGTATGTTCTATGGCATGAAATTCTACAATGACCTGTTAATGGAAGCGGGGCCATTTGGAAACGTGCAATCGGAAGTACTTTTGCAGAAGGACAGGGAGACTTTTACCTTTAAGCAAGGATGGGCATTTCCTCGGAAAGTTTACTTCAATGGTGATGAATGTATGTTGCCTCACCCGGACACATACCCGTTTCTACCCAACTCTGCATGGGACTGGTCTATCGCGGTTACGAACATGGCTGCTTCCTTGCTTTTGATATTATGGTTCATATGGTGA 1320 43.41 MEVSTTDLKCITLALLLFMVFSPIRAFDPLDPNGNITIKWDVVSWTADGYVAAVIMNNFQMYRHIITPGWTLSWSWAKKEVIWSMVGAQTTEQGDCSKFKGNVPHCCKKTPTVVDLLPGVPYNQQFFNCCKGGVLSSWGQDPSSSVSAFQISVGLAGTSNKTVKLPQNFTLLGPGPGYTCGPAKIVPSTVYLTPDKRRKTQALMTWNVTCTYSQFLASKNPSCCVSFSSFYNETITPCPSCACGCQNKKNCIMSDSKLLQKAGINTPRKDSAALLQCTHHMCPVRVHWHVKVNYKDYWRVKIAITNFNYRLNYTLWTLAVQHPNLNNVSQVFSFDYKPLVPYASINDTGMFYGMKFYNDLLMEAGPFGNVQSEVLLQKDRETFTFKQGWAFPRKVYFNGDECMLPHPDTYPFLPNSAWDWSIAVTNMAASLLLILWFIW 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 177797 179683 + Conep13aG0003000.1 Cone13ag0028 450415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0028 439 Pfam COBRA-like protein 50 213 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Cone13ag0028 439 PANTHER PROTEIN COBRA 12 433 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
Cone13ag0028 439 PIRSF COBRA 2 439 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0355 Cone-Chr11:1740982 Cone13ag0028 Cone-Chr13:177797 7.70E-279 dispersed
Cone13ag0028 Cone-Chr13:177797 Cone18ag1145 Cone-Chr18:8250218 2.60E-172 dispersed
Cone13ag0028 Cone-Chr13:177797 Cone13ag0029 Cone-Chr13:179997 5.44E-225 tandem
Cone13ag0028 Cone-Chr13:177797 Cone19ag0037 Cone-Chr19:253809 9.96E-228 wgd
Cone13ag0028 Cone-Chr13:177797 Cone2ag0494 Cone-Chr2:2677819 2.94E-200 wgd
Cone13ag0028 Cone-Chr13:177797 Cone6ag1076 Cone-Chr6:6507109 3.55E-06 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0028 - - - 0.0