Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0029 ATGGATTCTCGTTGCTTTGTTGCTATTACTGGATCTATTGCCGCCAAGCTTAGCAGATTCACCATCTTGCTTCTTTTTCTACTGTCTTTCTTCACTTTTATTCCAACTGAAGCATATGATGCGCTCGATCCAACCGGAAATATCACAATCAAATGGGATGTCATGAGCTGGACTCCAGATGGTTATGTTGCTGTTGTCACAATGTTCAACTTCCAGCAGTATCGTCACATTCAAGATCCAGGCTGGAAATTGGGCTGGACATGGGCTAAGAAGGAAGTAATCTGGAGCATGGTAGGTAGCCAAACAACAGAGCAAGGAGATTGTTCCAGATTCAAAGGAAACATCCCTCATTGCTGTAAGAAAGATCCAACAGTCGTAGATTTACTGCCCGGAACTCCGTACAACCAGCAGATTGCCAATTGCTGCAAAGGTGGGGTCATTAACTCGTGGGCCCAAGACCCATCCAATGCCGTTAGTTCCTTTCAGGTCAGTGTTGGTGCGGCGGGAACAACTAACAAAACTGTCAGACTGCCTAAAAACTTCACCCTTAAAGCCCCTGGTCCTGGATATACTTGTGGGCCGGCAAAGATTGTGAAACCAACTAGATTTGTATCGGCCGATAGTAGGAGAGTCACTCAAGCTTTGATGACATGGAATGTTACTTGCACTTATTCACAATTTCTTGCCCAAAAGACACCCACCTGTTGTGTATCGCTTTCTTCCTTCTATAATGACACAGTTGTGAACTGCCCAGTCTGTAGCTGTGGCTGTCAGAACAACATTACAGAACCCGGAAGTTGTGTGGACCCAGATTCTCCATATTTAAGGTCAGTTGTATCTGGTTCAGGAAAATCAAGCAATACACCTCTAGTTCAATGTACTAGCCATATGTGCCCCATCCGAATTCATTGGCACGTTAAGATCAATTACAAGGAGTATTGGAGGGTGAAGATTACCATCACTAATTTCAATTACAGAATGAACTACACACAGTGGAATCTTGTCGTGCAACACCCCAACTTTGATAACTTGACTCAGTTATTCAGCTTTAATTACAAGTCATTGACTCCATATGTTGGCTTAAATGATACTGCAATGCTGTGGGGAGTCAAGTTCTACAATGACTTCCTTTCACAGGCAGGCCCTCTGGGCAACGTGCAATCAGAACTCCTTTTCCGAAAGGACAAGAGTACCTTTACTTTTGACAAGGGTTGGGCTTTTCCAAGAAGAGTTTATTTCAACGGTGATAACTGTGTGATGCCACCGCCTGATGCATATCCGTGGTTACCCAATTCCGGGCCCCGGCATATCATTTCTCCTCTCAGTTTCACAATAACCGTCTTGGCATCTTTGATACTCCTCTTGGCTTTTGCTTAA 1377 44.15 MDSRCFVAITGSIAAKLSRFTILLLFLLSFFTFIPTEAYDALDPTGNITIKWDVMSWTPDGYVAVVTMFNFQQYRHIQDPGWKLGWTWAKKEVIWSMVGSQTTEQGDCSRFKGNIPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVINSWAQDPSNAVSSFQVSVGAAGTTNKTVRLPKNFTLKAPGPGYTCGPAKIVKPTRFVSADSRRVTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNDTVVNCPVCSCGCQNNITEPGSCVDPDSPYLRSVVSGSGKSSNTPLVQCTSHMCPIRIHWHVKINYKEYWRVKITITNFNYRMNYTQWNLVVQHPNFDNLTQLFSFNYKSLTPYVGLNDTAMLWGVKFYNDFLSQAGPLGNVQSELLFRKDKSTFTFDKGWAFPRRVYFNGDNCVMPPPDAYPWLPNSGPRHIISPLSFTITVLASLILLLAFA 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 179997 182847 - Conep13aG0003100.1 Cone13ag0029 450416

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0029 458 PANTHER PROTEIN COBRA 26 448 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
Cone13ag0029 458 Pfam COBRA-like protein 62 225 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Cone13ag0029 458 PIRSF COBRA 11 458 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0029 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0029 Cone-Chr13:179997 Cone19ag0037 Cone-Chr19:253809 0 dispersed
Cone13ag0028 Cone-Chr13:177797 Cone13ag0029 Cone-Chr13:179997 5.44E-225 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g446 . . Bda06g00513 . Bpe12g00518 . . . Cmo13g01107 . Cma10g00289 Cma11g00218 Car10g00271 Car11g00197 Sed08g0288 . Cpe04g01449 Bhi02g00081 Tan09g2023 Cmetu02g0745 . Hepe09g0285 . . Cla06g01531 Cam06g1688 Cec06g1750 Cco06g1748 Clacu06g1655 Cmu06g1602 Cre06g2414 . . Cone13ag0029 . . . Chy12g01483 Cme12g01924 . . . . . . . . . Cmo10g00308 Cmo11g00221 Cma13g01062 . Car13g00898 . . Cpe18g00713 Bhi08g01067 . . Lac10g0179 Hepe07g2448 . . Cla04g01143 Cam04g1196 Cec01g1708 Cco01g1753 Clacu04g1222 Cmu04g1202 Cre01g1500 Lsi06g01402 Csa01g00341 Chy02g02401 Cme02g01813
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone19ag0037 . 50 452 COBRA Gene Family AT5G60920 81.2 5.2e-212 734.2
Cone13ag0029 . 50 458 COBRA Gene Family AT5G60920 80.0 1.5e-211 732.6
Cone2ag0494 . 27 416 COBRA Gene Family AT5G60920 73.2 1.3e-183 639.8
Cone11ag0355 . 36 436 COBRA Gene Family AT5G60920 68.6 3.8e-178 621.7
Cone13ag0028 . 38 415 COBRA Gene Family AT5G60920 69.6 2.2e-173 605.9
Cone3ag0918 . 15 398 COBRA Gene Family AT5G60920 52.9 2.2e-125 446.4
Cone3ag1493 . 50 215 COBRA Gene Family AT5G60920 75.4 2.8e-80 296.6
Cone16ag0514 . 20 139 COBRA Gene Family AT5G60920 62.5 1.3e-40 164.9
Cone19ag0037 . 19 443 COBRA Gene Family AT3G02210 76.6 1.2e-209 726.5
Cone13ag0029 . 19 441 COBRA Gene Family AT3G02210 75.5 1.9e-207 719.2
Cone2ag0494 . 27 395 COBRA Gene Family AT3G02210 75.6 9.0e-181 630.6
Cone11ag0355 . 12 439 COBRA Gene Family AT3G02210 66.0 9.3e-178 620.5
Cone13ag0028 . 15 436 COBRA Gene Family AT3G02210 65.3 5.1e-176 614.8
Cone3ag0918 . 2 421 COBRA Gene Family AT3G02210 53.5 2.7e-132 469.5
Cone18ag1145 . 28 368 COBRA Gene Family AT3G02210 50.2 2.7e-108 389.8
Cone3ag1493 . 20 215 COBRA Gene Family AT3G02210 69.8 7.9e-84 308.5
Cone16ag0514 . 20 120 COBRA Gene Family AT3G02210 72.3 5.2e-43 172.9
Cone13ag0029 . 18 455 COBRA Gene Family AT3G29810 74.1 1.1e-207 719.9
Cone19ag0037 . 18 441 COBRA Gene Family AT3G29810 76.5 1.4e-207 719.5
Cone2ag0494 . 27 412 COBRA Gene Family AT3G29810 71.5 8.8e-181 630.6
Cone11ag0355 . 24 437 COBRA Gene Family AT3G29810 65.8 5.5e-175 611.3
Cone13ag0028 . 21 417 COBRA Gene Family AT3G29810 64.5 2.0e-169 592.8
Cone3ag0918 . 2 422 COBRA Gene Family AT3G29810 53.8 5.2e-133 471.9
Cone3ag1493 . 20 215 COBRA Gene Family AT3G29810 69.6 2.9e-83 306.6
Cone16ag0514 . 20 135 COBRA Gene Family AT3G29810 62.9 3.6e-41 166.8
Cone11ag0355 . 14 344 COBRA Gene Family AT5G15630 83.7 3.2e-178 621.7
Cone13ag0028 . 18 346 COBRA Gene Family AT5G15630 83.3 1.7e-176 615.9
Cone19ag0037 . 33 358 COBRA Gene Family AT5G15630 74.2 1.1e-151 533.5
Cone13ag0029 . 38 358 COBRA Gene Family AT5G15630 73.8 8.1e-150 527.3
Cone2ag0494 . 27 321 COBRA Gene Family AT5G15630 67.1 9.7e-127 450.7
Cone18ag1145 . 32 307 COBRA Gene Family AT5G15630 57.4 2.7e-105 379.4
Cone3ag0918 . 3 330 COBRA Gene Family AT5G15630 50.2 4.7e-97 352.1
Cone3ag1493 . 20 215 COBRA Gene Family AT5G15630 69.3 1.8e-80 297.0
Cone13ag0029 . 21 226 COBRA Gene Family AT5G60950 57.3 1.3e-65 246.9
Cone19ag0037 . 21 226 COBRA Gene Family AT5G60950 57.3 1.1e-64 243.8
Cone11ag0355 . 11 212 COBRA Gene Family AT5G60950 55.4 1.2e-58 223.8
Cone3ag1493 . 21 215 COBRA Gene Family AT5G60950 54.0 1.5e-58 223.4
Cone13ag0028 . 12 214 COBRA Gene Family AT5G60950 53.9 6.3e-57 218.0
Cone2ag0494 . 27 189 COBRA Gene Family AT5G60950 59.5 6.1e-52 201.4
Cone3ag0918 . 3 402 COBRA Gene Family AT1G09790 58.0 9.6e-143 504.2
Cone19ag0037 . 21 432 COBRA Gene Family AT1G09790 54.4 3.3e-135 479.2
Cone13ag0029 . 21 432 COBRA Gene Family AT1G09790 54.0 1.6e-134 476.9
Cone11ag0355 . 3 418 COBRA Gene Family AT1G09790 50.8 9.0e-133 471.1
Cone13ag0028 . 15 417 COBRA Gene Family AT1G09790 51.7 2.1e-129 459.9
Cone2ag0494 . 29 391 COBRA Gene Family AT1G09790 56.8 1.0e-128 457.6
Cone4ag0122 . 5 628 COBRA Gene Family AT4G16120 66.0 3.1e-254 875.2
Cone15ag0747 . 33 657 COBRA Gene Family AT4G16120 64.5 1.6e-250 862.8
Cone6ag0084 . 57 649 COBRA Gene Family AT4G16120 52.7 6.5e-204 708.0
Cone16ag0165 . 55 648 COBRA Gene Family AT4G16120 51.7 1.1e-200 697.2
Cone14ag1126 . 28 621 COBRA Gene Family AT4G16120 53.9 9.7e-200 694.1
Cone7ag0118 . 38 292 COBRA Gene Family AT4G16120 61.0 2.7e-93 340.5
Cone7ag0119 . 42 209 COBRA Gene Family AT4G16120 63.7 4.1e-65 246.9
Cone4ag0122 . 11 634 COBRA Gene Family AT3G16860 64.2 2.2e-244 842.4
Cone15ag0747 . 1 636 COBRA Gene Family AT3G16860 60.5 9.8e-237 817.0
Cone6ag0084 . 45 667 COBRA Gene Family AT3G16860 50.5 9.3e-195 677.6
Cone16ag0165 . 45 658 COBRA Gene Family AT3G16860 50.2 3.5e-194 675.6
Cone14ag1126 . 5 617 COBRA Gene Family AT3G16860 51.3 1.5e-192 670.2
Cone7ag0118 . 28 292 COBRA Gene Family AT3G16860 60.7 8.4e-95 345.5
Cone7ag0119 . 42 210 COBRA Gene Family AT3G16860 61.5 3.2e-62 237.3
Cone4ag0122 . 15 653 COBRA Gene Family AT5G49270 60.1 1.6e-239 826.2
Cone15ag0747 . 6 646 COBRA Gene Family AT5G49270 59.0 1.1e-230 797.0
Cone14ag1126 . 24 642 COBRA Gene Family AT5G49270 50.9 4.7e-194 675.2
Cone7ag0118 . 33 292 COBRA Gene Family AT5G49270 55.9 3.5e-88 323.6
Cone7ag0119 . 33 222 COBRA Gene Family AT5G49270 56.6 1.9e-57 221.5
Cone6ag0084 . 48 671 COBRA Gene Family AT3G20580 59.4 2.7e-237 818.9
Cone14ag1126 . 1 644 COBRA Gene Family AT3G20580 59.4 2.3e-236 815.8
Cone16ag0165 . 5 667 COBRA Gene Family AT3G20580 56.5 3.6e-234 808.5
Cone4ag0122 . 31 649 COBRA Gene Family AT3G20580 53.3 9.5e-203 704.1
Cone15ag0747 . 29 658 COBRA Gene Family AT3G20580 52.4 2.4e-198 689.5
Cone7ag0119 . 28 229 COBRA Gene Family AT3G20580 53.9 8.7e-63 239.2
Cone6ag1076 . 1 192 COBRA Gene Family AT3G20580 50.9 2.1e-56 218.0
Cone14ag1126 . 11 645 COBRA Gene Family AT4G27110 60.2 2.6e-232 802.4
Cone6ag0084 . 8 671 COBRA Gene Family AT4G27110 55.4 3.0e-225 778.9
Cone16ag0165 . 35 671 COBRA Gene Family AT4G27110 56.7 1.1e-222 770.4
Cone4ag0122 . 26 649 COBRA Gene Family AT4G27110 51.1 1.2e-194 677.2
Cone6ag1076 . 2 191 COBRA Gene Family AT4G27110 54.2 2.0e-59 228.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001464 2 2 2 3 3 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 3 2 2 3 2 2 3 2 2 73