Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0045 ATGTACTATGCAGATAACATGGTTCATAAACGGCCTTTCGACAATGGAGAAGTATTTGATATATCTTCTAAGCACCCAAGACAAGCTGAGCAGAGTAATCGGCTAGTTTCATTTTCCGAGTTTGTTTTCCCGGATGATGTCTTGCGGAACCATCGCACTTCAGAGGACGTATTGGCGAAAGATCATACTAAAAGTGATGAGAAGCTTCCAAGTGAAGTTTTTGATAAATGTTCTCGAAGCACTGGGAATGATGAAATCAATTTACCTGGCTGCATTTGCGGCTCTTCCTTGGTATCTAGTAGTACCAATAGAGAAGAATCCGGGTCAGACACTCCCTTCCATATTCCATTATATTCTGAAGGATTTAATCCCGAGCATCAGATAAGGATGTTGGCTCACTGTGAAGAGATTTATTCTTTACTTTTGGACCTTCCTCCGCAAAAACATATCCCCATTGGACCAGACCATCAAGCAGGTATTCCACCATGGGTATCCGTGTCAGATTTTGATCTCACTGATGAGAATCAGATTCGAGTGATGGGTAAGTGTGTAATTCCAATGCCTGAGATTGAAAAATCTGCAAATGATCCTGAAAATATAGGGAATGGAAGAGGTGAATGCAGCTGTGAAGATTTGGGTTCTGTTAGATGTGTCAGAAAGCACATCGAAGAAGCAAGAGAGGAACTTTCTAGAACCATTGGGCCAGAGAGGTTTGAGGAGCTGGTTTTCTCAGACATGGGAGAGCAAGTGGCTCAGAAATGGAGTGAAGAGGAGGAACGATTATTTCATGAAACAATCTTCTCTAATCCTGCCTCATCAGGGAAGAATTTCTGGGTCAATCTTTCCATTGAATTTCCCTCTCGAACCAGAAAGGAGATTGTCAGCTACTATTTCAATGTCTTCATGCTTAGAAAGCGAGCAGAACAGAACAGATGTGACTCGATAAGTATTGATAGTGACTGTGATGAATATGAATTTCAAGTCACAGAAGAAGATGAGGATGATTCCAGTCTCGAGTCTCCACTTCCTAAAATATTGGATAATGATAATGACAATGGAATTAACCAGGCTTCAGATAAATTACAAGGACAGGATGATTCTTGCACTTCATCTGATACAGGTCCGGTATCACAGAGAAGTGGGGAAAAGCCGGTGAATGGTGAGCATTATTTGCTGAGTAGCTTCAATGGGCTGAGCAATAATGGTCATGAATACATTCTGGAGCCTTGTGATGGTGCTGCTAAAGCATGGAATAATGGCAACTATCTCACTTGCTTTGGAAACAAAGTCGATTTCTTGCCGACTTGTAGTATGATTGAAGAGGTTTTTGGAGATGGGTCGTGTGAATACAAGCCGAGAGACGGCAAGAACTTGAGTTAG 1380 41.74 MYYADNMVHKRPFDNGEVFDISSKHPRQAEQSNRLVSFSEFVFPDDVLRNHRTSEDVLAKDHTKSDEKLPSEVFDKCSRSTGNDEINLPGCICGSSLVSSSTNREESGSDTPFHIPLYSEGFNPEHQIRMLAHCEEIYSLLLDLPPQKHIPIGPDHQAGIPPWVSVSDFDLTDENQIRVMGKCVIPMPEIEKSANDPENIGNGRGECSCEDLGSVRCVRKHIEEAREELSRTIGPERFEELVFSDMGEQVAQKWSEEEERLFHETIFSNPASSGKNFWVNLSIEFPSRTRKEIVSYYFNVFMLRKRAEQNRCDSISIDSDCDEYEFQVTEEDEDDSSLESPLPKILDNDNDNGINQASDKLQGQDDSCTSSDTGPVSQRSGEKPVNGEHYLLSSFNGLSNNGHEYILEPCDGAAKAWNNGNYLTCFGNKVDFLPTCSMIEEVFGDGSCEYKPRDGKNLS 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 265074 267972 + Conep13aG0004800.1 Cone13ag0045 450432

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0045 459 MobiDBLite consensus disorder prediction 326 385 - -
Cone13ag0045 459 PANTHER DNA BINDING PROTEIN 352 453 - -
Cone13ag0045 459 MobiDBLite consensus disorder prediction 349 380 - -
Cone13ag0045 459 CDD SANT 253 301 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0045 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0045 Cone-Chr13:265074 Cone14ag0369 Cone-Chr14:1724663 1.15E-30 dispersed
Cone13ag0045 Cone-Chr13:265074 Cone19ag0050 Cone-Chr19:325094 1.32E-267 wgd
Cone13ag0045 Cone-Chr13:265074 Cone19ag0908 Cone-Chr19:7062956 1.37E-57 wgd
Cone13ag0045 Cone-Chr13:265074 Cone2ag0526 Cone-Chr2:2898431 4.33E-57 wgd
Cone13ag0045 Cone-Chr13:265074 Cone6ag0540 Cone-Chr6:2662307 9.03E-71 wgd
Cone13ag0045 Cone-Chr13:265074 Cone9ag0550 Cone-Chr9:2618445 1.55E-71 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g612 . . Bda06g00529 . . . . Bma12g00973 . . . . Car10g00208 . . . . . . . . . . . . . . . . . . . . Cone13ag0045 Cone19ag0050 . . . . . Blo15g00329 . . Bpe07g00763 . . . . . . . . . . . Cpe18g00769 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004521 2 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 42