Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0052 ATGGAGAAGGATAAGGAAGTTCTGCTTGACCTAAAAGTTTTCCTCGAAAACCAGAATCGCGTTAATCGAGGAAGATACGCTTCGTGGAACAACGAGACCTCGAGTAGTCCATGTCAATGGCAAGGAATAATTTGCAATTCAAACGATTCCAGAGTTACCGGTATTGATCTCTCTGGTAGCTCCATCTCGGGCGAAATGTTCCGAAACTTCTCCGATTTAACCGAGCTATCCTACCTCGACCTCTCGGAGAATACGATTTCTGGTCAAATTTCGGAGAATCTGAACGCTTGTGAAGGACTCAAGTTCCTCAATCTTTCGCGTAATATTATGGAAAGTAATCTGAATTTGTCAGGTCTGATCAACATGGAGGTTTTGGATTTATCAGTGAATCGATTCAGCGGAGAGATTCAGTCGAGTTTTCCCGCTATTTGCAACAGATTAATCGTCGCGAATATTTCGGGAAACAATCTCACTGGTCGAATCGATAATTGTTTTGATGAGTGTTCGAATTTGCAGTACTTGGATTTGAGCTCCAACCACTTCAATGGAGTCTTGTGGTTAGGGTTTGAAAAGCTTCTGGAGTTTTCGGTCTCTGAAAATGAACTCGCCGGCTCACTTTCGCCTTTGTTCTTCACAAACAACTGCAGTTTGAAGTTTCTGGATCTTTCCGGAAATAATTTCACCGGTGAAGTACCAGGAGAGATTTCGAATTGTGCTGGTTTGGTCAATTTGATTCTATCAGGTAACAAATTTTCTGGGAAAATTCCACACCAGGTAGGAGATATTCAAAGTCTTGAAGGTTTACATTTAGGAACAAACAATTTTTCCAGAGAGATTCCTTCGTCACTTACAAATTTGACCAGATTGGTGTTCTTGGATATGAGCAAGAACAATTTTGGAGGAGAAATTCAGGAGATTCTCGGGAAAGTGACGCAGGTACAATTCCTTCTTTTGCATGGGAATTCATATACTGGAGGGATCAATTCCTCTGGAATTGTAAATCTACCTAACATTTCTCGCTTAGACCTAAGCTACAACAGTTTTTCAGGTCCATTACCAGAAGAAATCTCTGGAATTCAGAGTTTACAGTACTTAATGCTTGCTTACAATCAATTCTCCGGACCAATACCGTCTAAATTTGGAAACTTGGCAAATCTTCAGGCTCTTGATATCTCTTACAATATGCTAAATGGTTCAGTTCCTAGAAGCTTTGGCAACTTGAAGTTCCTCTTATGGCTTATGGTAGCTAACAATTCATTAACGGGTCAAATTCCAGAGGAGTTGGGAAACTGTTCTAGCTTGTTATGGCTTAATCTTGCCAACAACAAGCTTTCCGGAAAAATCCCCTCTGAATTAACAAGTATAGGAAAAAACGCTAGTGTTACATTCGAAGTAAATCGTAAGAATGAAAAATTCGTTGCAGGTTCAGGTGAGTGCTTAACGATGAAGAGATGGATTCCAGCAGACTATCCTCCATTCAATTCAGTTTATGCGATTCTTACAAGGAAGAGCTGTAGAAGCATATGGGATCGATTGCTTAAAGGGTACGGCCTTTTCCCGATTTGTAGCCCAGGTTCATCTGTAAGAACTTTACAGATCTCTGGTTATGTTCAATTAAGTGGAAATCAGCTTTCTGGTGAGTTAACTTCAGAAATTAGTAAGATGGGGAATTTCACTATGTTACATTTGAGTAATAACAATTTGAACGGAAAGTTTCCTTCTGAGATTGGAAACTTACCACTTGTGGTCTTAAATATTTCAAACAACAATTTTTCGGGAGAATTTCCTTCGGAAATCGGGAATATTAAGTGCCTGCAAAATCTCGATTTGTCATATAACAATTTTTCCGGCATCTTTCCTAATAGCTTGAGCAATTTGTCTGATCTGAGCAAGTTCAATGTATCTTACAATCCTTTGATTTCTGGCAAAGTACCTACAACCGGGCAATTCATAACATTTGAAAAGGAATCCTATTTAGGAGATCCCCTCTTGCTCCTTCCGGATTTCTTCAACACCAACCCACCTAAAGCACCAAGCAACTCTAAAAGCGACGTTCCTCTTAAAGTTTCTTCAAGAAACAATGGAGCTTTTGTCTCTTTAGCTCTAGTAGTTGGTTTCTTGATATGTGTCTTAATTTCAGTCACGGTCTGCCTGTTGATGAAAAAAACAGATAAAGGAAAACCATCCCAATACCTCTTGGAAGACGCTATGCATTCTACATCAAGCTCTCGCAATTCATCACCATGGTTATCTGATTCTGTTAAGGTTATTCGCTTGGACAGAACTGCATTCACTCATGCAGACATTCTAAAGGCTACTGGAAACTTCTCAGAAGATAGAGTTATCGGAAAGGGTGGGTTCGGAACCGTATACCGAGGAGTATTACCTGATGGCAGACAAGTAGCAGTGAAGAAGCTCCAAAGAGAAGGAATAGAAGGGGAAAAAGAATTTCAGGCTGAAATGGAAGTTCTAACTGGTAACAATAGCTTCAGCTGGCCCCACCCGAACCTCGTGGCTCTTTACGGGTGGTGTCTTGACAAATCTGAAAAGATCTTGGTCTATGAATACATGGAAGGTGGGAGTTTAGAAGATCTTATATTGGACAGACTAAAGTTTTCATGGCGAAGTCGGATCAAGATTGCCATACATATTGCCCGTGCATTAGTCTACCTTCATCATGAATGCTTCCCAGCAATTGTGCACCGTGATGTAAAAGCAAGCAATGTCCTTCTAGACAAAGACGGAAATGCCTGTGTAACTGATTTTGGTTTAGCCCGAGTTGTAGATATTGGAGATAGCCATGTCAGCACTATGGTGGCGGGAACAGTTGGATATGTAGCTCCAGAATATGGACAAACATGGAAAGCTACAACAAAAGGTGATGTGTATAGTTTTGGGGTTTTGGCTATGGAATTGGCTACCGGGAGGAGAGCTGTGGATGGGGGAGAAGAGTGTTTGGTTGAATGGGCAAAACGGGTCATGAAAAATGGGCGGGCTGGGTTTAGTGGAGCCGTGTATATTCCGGCTGTGCTTTTCTGGTACGGGTTGAATGAAGGGGCAAAGGAGATGTTTGAGTTGCTTAGGATTGGGGTGAAATGCACTAATGAAATACCACAGTGTAGACCCAATATGAAGGAGGTGCTGGATTTGCTTGTTAAGGTATGTGATTTTTGA 3174 41.08 MEKDKEVLLDLKVFLENQNRVNRGRYASWNNETSSSPCQWQGIICNSNDSRVTGIDLSGSSISGEMFRNFSDLTELSYLDLSENTISGQISENLNACEGLKFLNLSRNIMESNLNLSGLINMEVLDLSVNRFSGEIQSSFPAICNRLIVANISGNNLTGRIDNCFDECSNLQYLDLSSNHFNGVLWLGFEKLLEFSVSENELAGSLSPLFFTNNCSLKFLDLSGNNFTGEVPGEISNCAGLVNLILSGNKFSGKIPHQVGDIQSLEGLHLGTNNFSREIPSSLTNLTRLVFLDMSKNNFGGEIQEILGKVTQVQFLLLHGNSYTGGINSSGIVNLPNISRLDLSYNSFSGPLPEEISGIQSLQYLMLAYNQFSGPIPSKFGNLANLQALDISYNMLNGSVPRSFGNLKFLLWLMVANNSLTGQIPEELGNCSSLLWLNLANNKLSGKIPSELTSIGKNASVTFEVNRKNEKFVAGSGECLTMKRWIPADYPPFNSVYAILTRKSCRSIWDRLLKGYGLFPICSPGSSVRTLQISGYVQLSGNQLSGELTSEISKMGNFTMLHLSNNNLNGKFPSEIGNLPLVVLNISNNNFSGEFPSEIGNIKCLQNLDLSYNNFSGIFPNSLSNLSDLSKFNVSYNPLISGKVPTTGQFITFEKESYLGDPLLLLPDFFNTNPPKAPSNSKSDVPLKVSSRNNGAFVSLALVVGFLICVLISVTVCLLMKKTDKGKPSQYLLEDAMHSTSSSRNSSPWLSDSVKVIRLDRTAFTHADILKATGNFSEDRVIGKGGFGTVYRGVLPDGRQVAVKKLQREGIEGEKEFQAEMEVLTGNNSFSWPHPNLVALYGWCLDKSEKILVYEYMEGGSLEDLILDRLKFSWRSRIKIAIHIARALVYLHHECFPAIVHRDVKASNVLLDKDGNACVTDFGLARVVDIGDSHVSTMVAGTVGYVAPEYGQTWKATTKGDVYSFGVLAMELATGRRAVDGGEECLVEWAKRVMKNGRAGFSGAVYIPAVLFWYGLNEGAKEMFELLRIGVKCTNEIPQCRPNMKEVLDLLVKVCDF 1057
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 329681 332854 - Conep13aG0005500.1 Cone13ag0052 450439

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0052 1057 FunFam Leucine-rich repeat receptor-like protein kinase 857 1056 - -
Cone13ag0052 1057 Gene3D Transferase(Phosphotransferase) domain 1 857 1056 - -
Cone13ag0052 1057 FunFam Leucine-rich repeat receptor protein kinase EMS1 207 305 - -
Cone13ag0052 1057 SUPERFAMILY L domain-like 190 643 - -
Cone13ag0052 1057 Pfam Leucine Rich Repeat 337 358 IPR001611 GO:0005515(InterPro)
Cone13ag0052 1057 Pfam Leucine Rich Repeat 216 238 IPR001611 GO:0005515(InterPro)
Cone13ag0052 1057 Pfam Leucine Rich Repeat 385 407 IPR001611 GO:0005515(InterPro)
Cone13ag0052 1057 Pfam Leucine Rich Repeat 170 192 IPR001611 GO:0005515(InterPro)
Cone13ag0052 1057 Pfam Leucine Rich Repeat 433 453 IPR001611 GO:0005515(InterPro)
Cone13ag0052 1057 Pfam Leucine Rich Repeat 559 579 IPR001611 GO:0005515(InterPro)
Cone13ag0052 1057 Pfam Leucine Rich Repeat 605 626 IPR001611 GO:0005515(InterPro)
Cone13ag0052 1057 Pfam Leucine Rich Repeat 581 601 IPR001611 GO:0005515(InterPro)
Cone13ag0052 1057 Pfam Leucine Rich Repeat 361 383 IPR001611 GO:0005515(InterPro)
Cone13ag0052 1057 Gene3D Phosphorylase Kinase; domain 1 737 856 - -
Cone13ag0052 1057 SUPERFAMILY Protein kinase-like (PK-like) 759 1051 IPR011009 -
Cone13ag0052 1057 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 307 1052 IPR051564 GO:0016020(PANTHER)
Cone13ag0052 1057 FunFam Putative LRR receptor-like serine/threonine-protein kinase 310 471 - -
Cone13ag0052 1057 SUPERFAMILY L domain-like 33 275 - -
Cone13ag0052 1057 Gene3D Ribonuclease Inhibitor 303 483 IPR032675 -
Cone13ag0052 1057 Gene3D Ribonuclease Inhibitor 515 677 IPR032675 -
Cone13ag0052 1057 SMART serkin_6 776 1053 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag0052 1057 CDD STKc_IRAK 782 1053 - -
Cone13ag0052 1057 ProSitePatterns Serine/Threonine protein kinases active-site signature. 899 911 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone13ag0052 1057 ProSiteProfiles Protein kinase domain profile. 776 1057 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag0052 1057 ProSitePatterns Protein kinases ATP-binding region signature. 782 805 IPR017441 GO:0005524(InterPro)
Cone13ag0052 1057 Gene3D Ribonuclease Inhibitor 190 302 IPR032675 -
Cone13ag0052 1057 Gene3D Ribonuclease Inhibitor 3 119 IPR032675 -
Cone13ag0052 1057 Gene3D Ribonuclease Inhibitor 120 189 IPR032675 -
Cone13ag0052 1057 SMART LRR_typ_2 383 406 IPR003591 -
Cone13ag0052 1057 SMART LRR_typ_2 335 359 IPR003591 -
Cone13ag0052 1057 SMART LRR_typ_2 262 286 IPR003591 -
Cone13ag0052 1057 SMART LRR_typ_2 73 97 IPR003591 -
Cone13ag0052 1057 SMART LRR_typ_2 555 579 IPR003591 -
Cone13ag0052 1057 SMART LRR_typ_2 407 431 IPR003591 -
Cone13ag0052 1057 SMART LRR_typ_2 602 625 IPR003591 -
Cone13ag0052 1057 FunFam serine/threonine-protein kinase BRI1-like 2 736 856 - -
Cone13ag0052 1057 Pfam Leucine rich repeat N-terminal domain 3 46 IPR013210 -
Cone13ag0052 1057 Pfam Protein kinase domain 777 981 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0052 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0052 Cone-Chr13:329681 Cone5ag0856 Cone-Chr5:3659828 5.46E-64 dispersed
Cone13ag0052 Cone-Chr13:329681 Cone2ag0823 Cone-Chr2:34230417 7.11E-267 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g601 . . . Bda15g00614 Bpe12g00532 . . . . . Cma10g00211 . Car10g00198 . . . . Bhi02g00285 . . . . . . Cla06g01566 . . . . . . Cone2ag0823 . Cone13ag0052 . . . . . . . . . . . . . . . . . . . . . Cpe18g00778 . . . . . . . . . . . . . . Lsi06g01441 Csa01g00264 Chy02g02469 Cme02g01857
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007471 1 1 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 2 1 2 2 1 2 3 2 0 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81996 PF00609 DAGK_acc 1.10E-54 No_clan Cone PK