Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0061 ATGTCGAGAAAGCTATTTCCTTCGAAACATACAATCCGCCTCACCACTAATTACTCCTCTTTGTCCTCTTCTTCATCTCGCCCCTCTTCCACTTCTTCTTTTTCTTCTTCTTCCTCACCTTCTATTACTTCTGATCTCACAATTACGATTCTGAACAGTAAAAGCCCCGAACAGGCACTTGAAATCTTCCACTCAGCACCGAGAAAGAATCCTCAGATTTACTCTGCAATTATTCACGTTTTAGTCGGGTCCAAATTTTTCTCGCGCGCGAGGCGTTTGATTAAAGACCTCACCGAAAACCTTCTAAAGAGTCGGACTCCTCGCCGTGTCTGTCACTCCTTATTCAATGCCCTTAACCGTTTGGGAAGCTCGAAATTTACTCCAAGTGTTTACGGAGAGTTAATTATAGTCTTGTCTAAGATGCATTTTGTTGATGAAGCATTATGGGTGTATAGAAAGATCCGATCATTGCCTGCTATTCACGCATGTAATTCTCTCTTAGATGGATTAGTGAAGAGCTCCAGGTTTGATTTATTATGGGTAATTTATAGAGAAATGGTATCAAGTGGATTCTCTCCAACTGTTGTCACATATGGTGTACTACTTGATGGGTGTACAAGTCAAGGAGATCTTTCAAAATCATTCAAGCTGTTCAATGAAATGACCGAGAGAAGGATCGAACCAACAGTTGTGATCTATACCATTCTGATACGAGGCCTATGCAGAGAAAACAGAATGGATGAAGCAGAAGGAATATTGAAGACAATGAGGGAAGAAAAAGGGGTTTTCCCAAATGTGTACACTTACAATACTCTAATGGATGGGTATTGCAAATTGTCTAATGTTAAAGAGGTCATTCGCTTGTATTATGATATGCTAAGTGATGCTCTAGATCCAGATATTGTCACATTTGGGATTTTGATAGATGCCCTTTGCAAATTTGGTGAACCCAGAATGGCTAGGGGTGTTTTTGTAAATATGGCTAAGTTCGGGGTTGTTCCTAATGCAACTGTCTATAATAGTTTGATCTATGGGTATAGTAAGGCAGGGGATTTGTGTGAAGCAATGAGTACACATTTCGAGATGGAAAGGTTGAAAATTTTGCCTGATGTGTTTACTTATAGTATCCTTATTAGGGGTCTTTGTGATCTTGGTAGAGTTAAAAAAGCGCAAGATTTACTAGAGAAAATGAATGGACGAGGAGTTATTGCAAATTCTATGACGTACAATTCACTTATTGATGGGTATTGTAAAGAAGGAAACATGATCAAAGCATTGGAAGTTTGTTCTCAAATGACAGAAAAAGGTATAGAGCCTAATGTGGTGACATTTTCTACGTTGATTGATGGTTATTGCAAGACCCGGAACATGGAAGCTGCAATGGGATTGTACACGGAAATGGTAATAAAATGCATTTCGCCCGATATAGTTACTTACACGGCTTTAATAGATGGGCACTGTAAAAACGGGGAAATGAAAGAGGCTCTTAAGTTACACAAGGATATGCTTGAGGTGGGTCTTACTCCTAACTTTTTCACTTATACTTGCTTGATTGATGGGCTGTGTAAAGATGGAAAAATATCCGAAGCAATCGAACTTTGTGGTTCTTCCAGTTGCCCGAATAATGTGATGTACACGGCTTTGCTTCAAGGGTTATGTGAAAATGGAGAAATTTTCAAGGCAAAGGAGTTATTCGCAAAAATGAGATGCTATGATTTGAAACCGAGTTCAGTTACTTGTATGATTATGCTAAAAGGTCTCTTTGGGGTGAAGCATATGATGGATGTGATGATGTTGCATTCGACTTTGATAAAGATGGGGATTTTACCGGATTCGGTACTGTTTTCGGTTTTGGCTCGGGGTTATACATATAATAGATATCTTAAATCAGCTCTTAGATGTTATGAGGATTTTGTGGCATCAGGCTCACCCCTCTGA 1938 39.27 MSRKLFPSKHTIRLTTNYSSLSSSSSRPSSTSSFSSSSSPSITSDLTITILNSKSPEQALEIFHSAPRKNPQIYSAIIHVLVGSKFFSRARRLIKDLTENLLKSRTPRRVCHSLFNALNRLGSSKFTPSVYGELIIVLSKMHFVDEALWVYRKIRSLPAIHACNSLLDGLVKSSRFDLLWVIYREMVSSGFSPTVVTYGVLLDGCTSQGDLSKSFKLFNEMTERRIEPTVVIYTILIRGLCRENRMDEAEGILKTMREEKGVFPNVYTYNTLMDGYCKLSNVKEVIRLYYDMLSDALDPDIVTFGILIDALCKFGEPRMARGVFVNMAKFGVVPNATVYNSLIYGYSKAGDLCEAMSTHFEMERLKILPDVFTYSILIRGLCDLGRVKKAQDLLEKMNGRGVIANSMTYNSLIDGYCKEGNMIKALEVCSQMTEKGIEPNVVTFSTLIDGYCKTRNMEAAMGLYTEMVIKCISPDIVTYTALIDGHCKNGEMKEALKLHKDMLEVGLTPNFFTYTCLIDGLCKDGKISEAIELCGSSSCPNNVMYTALLQGLCENGEIFKAKELFAKMRCYDLKPSSVTCMIMLKGLFGVKHMMDVMMLHSTLIKMGILPDSVLFSVLARGYTYNRYLKSALRCYEDFVASGSPL 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 368591 370961 + Conep13aG0006400.1 Cone13ag0061 450448

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0061 645 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 257 427 - -
Cone13ag0061 645 Gene3D Tetratricopeptide repeat domain 422 535 IPR011990 GO:0005515(InterPro)
Cone13ag0061 645 Gene3D Tetratricopeptide repeat domain 17 209 IPR011990 GO:0005515(InterPro)
Cone13ag0061 645 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 370 404 IPR002885 -
Cone13ag0061 645 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 335 369 IPR002885 -
Cone13ag0061 645 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 299 IPR002885 -
Cone13ag0061 645 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 405 439 IPR002885 -
Cone13ag0061 645 Gene3D Tetratricopeptide repeat domain 536 644 IPR011990 GO:0005515(InterPro)
Cone13ag0061 645 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 440 474 IPR002885 -
Cone13ag0061 645 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 541 575 IPR002885 -
Cone13ag0061 645 SUPERFAMILY HCP-like 335 532 - -
Cone13ag0061 645 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 229 259 IPR002885 -
Cone13ag0061 645 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 300 334 IPR002885 -
Cone13ag0061 645 Pfam PPR repeat family 228 278 IPR002885 -
Cone13ag0061 645 Pfam PPR repeat family 540 587 IPR002885 -
Cone13ag0061 645 Pfam PPR repeat family 405 453 IPR002885 -
Cone13ag0061 645 Pfam PPR repeat family 158 205 IPR002885 -
Cone13ag0061 645 Pfam PPR repeat family 474 523 IPR002885 -
Cone13ag0061 645 Pfam PPR repeat family 334 383 IPR002885 -
Cone13ag0061 645 MobiDBLite consensus disorder prediction 17 43 - -
Cone13ag0061 645 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 475 509 IPR002885 -
Cone13ag0061 645 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 159 193 IPR002885 -
Cone13ag0061 645 Pfam PPR repeat 297 327 IPR002885 -
Cone13ag0061 645 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 194 228 IPR002885 -
Cone13ag0061 645 NCBIfam pentatricopeptide repeat 267 300 IPR002885 -
Cone13ag0061 645 NCBIfam pentatricopeptide repeat 302 336 IPR002885 -
Cone13ag0061 645 NCBIfam pentatricopeptide repeat 477 510 IPR002885 -
Cone13ag0061 645 NCBIfam pentatricopeptide repeat 543 576 IPR002885 -
Cone13ag0061 645 NCBIfam pentatricopeptide repeat 231 266 IPR002885 -
Cone13ag0061 645 NCBIfam pentatricopeptide repeat 196 230 IPR002885 -
Cone13ag0061 645 NCBIfam pentatricopeptide repeat 162 195 IPR002885 -
Cone13ag0061 645 NCBIfam pentatricopeptide repeat 338 371 IPR002885 -
Cone13ag0061 645 NCBIfam pentatricopeptide repeat 512 533 IPR002885 -
Cone13ag0061 645 NCBIfam pentatricopeptide repeat 408 441 IPR002885 -
Cone13ag0061 645 NCBIfam pentatricopeptide repeat 442 476 IPR002885 -
Cone13ag0061 645 NCBIfam pentatricopeptide repeat 372 405 IPR002885 -
Cone13ag0061 645 FunFam Pentatricopeptide repeat-containing protein At5g39710 353 459 - -
Cone13ag0061 645 Gene3D Tetratricopeptide repeat domain 210 314 IPR011990 GO:0005515(InterPro)
Cone13ag0061 645 Gene3D Tetratricopeptide repeat domain 315 421 IPR011990 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0061 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0061 Cone-Chr13:368591 Cone18ag1059 Cone-Chr18:7775503 3.12E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g578 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0061 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007789 1 1 0 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 4 2 1 36