Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0065 ATGGCCAAATTCCTTGGAATTCTCTTGCTGGGTTTTCTATTCTCTTTCTGCTCATTTTCTCATGATGTGAATGGTGAAGGCAATTGGATCAATGCCCATGCTACTTTCTATGGTGGTGGTGATGCCTCTGGAACAATGGGTGGAGCATGTGGATATGGTAACCTATACAGTCAAGGATATGGCACAAACACAGCAGCATTAAGCACAGCAATGTTCAACAACGGCTTAAGTTGTGGTGCCTGTTATGAGATAAAGTGCGTGAATGATCCAAAATGGTGTCTTCCTGGCTCTGTTGTGGTCACTGCTACTAACTTCTGCCCGCCAAACAATGCTCTACCTAACAACAATGGCGGCTGGTGCAACCCTCCTCAGCAACATTTCGATCTCGCCCAACCTGTTTTCCAGAAAATCGCTCAGTACAAAGCTGGCATCATTCCTGTTTCATACAGAAGGGTAGCGTGTCAGAAGAAGGGAGGTATCAGATTCACGATTAATGGCCATTCTTACTTCAACCTGGTTTTGATCACAAACGTGGGAGGTGCAGGTGATGTTCATGCAGTTTCGATCAAAGGGTCGAGAACGAATTGGCAATCTATGTCTAGAAACTGGGGACAAAATTGGCAAAGCAACTCTTACCTGAACGGACAGAGCCTCTCCTTCAAGGTTACTACCAGTGATGGCCGCACCGTTGTCTCCAACGACGTCGTTCCTGCTGGTTGGTCCTTCAGTCAGACTTTCAGTGGGGTCCAATTTTGA 756 46.43 MAKFLGILLLGFLFSFCSFSHDVNGEGNWINAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTAMFNNGLSCGACYEIKCVNDPKWCLPGSVVVTATNFCPPNNALPNNNGGWCNPPQQHFDLAQPVFQKIAQYKAGIIPVSYRRVACQKKGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTNWQSMSRNWGQNWQSNSYLNGQSLSFKVTTSDGRTVVSNDVVPAGWSFSQTFSGVQF 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 406449 407948 + Conep13aG0006900.1 Cone13ag0065 450452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0065 251 Pfam Lytic transglycolase 64 149 IPR009009 -
Cone13ag0065 251 PANTHER EXPANSIN-A15 15 251 IPR002963 GO:0009664(InterPro)
Cone13ag0065 251 SUPERFAMILY PHL pollen allergen 156 247 IPR036749 -
Cone13ag0065 251 PRINTS Expansin signature 205 226 IPR002963 GO:0009664(InterPro)
Cone13ag0065 251 PRINTS Expansin signature 98 108 IPR002963 GO:0009664(InterPro)
Cone13ag0065 251 PRINTS Expansin signature 134 147 IPR002963 GO:0009664(InterPro)
Cone13ag0065 251 PRINTS Expansin signature 234 250 IPR002963 GO:0009664(InterPro)
Cone13ag0065 251 PRINTS Expansin signature 117 134 IPR002963 GO:0009664(InterPro)
Cone13ag0065 251 PRINTS Expansin signature 86 97 IPR002963 GO:0009664(InterPro)
Cone13ag0065 251 PRINTS Expansin signature 170 191 IPR002963 GO:0009664(InterPro)
Cone13ag0065 251 PRINTS Expansin signature 59 73 IPR002963 GO:0009664(InterPro)
Cone13ag0065 251 PRINTS Expansin signature 158 170 IPR002963 GO:0009664(InterPro)
Cone13ag0065 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 248 IPR007117 -
Cone13ag0065 251 SUPERFAMILY Barwin-like endoglucanases 12 177 IPR036908 -
Cone13ag0065 251 Pfam Expansin C-terminal domain 160 237 IPR007117 -
Cone13ag0065 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 159 IPR007112 -
Cone13ag0065 251 FunFam Expansin 159 251 - -
Cone13ag0065 251 Gene3D - 157 251 IPR036749 -
Cone13ag0065 251 SMART dpbb_1 64 149 IPR007112 -
Cone13ag0065 251 CDD DPBB_EXPA_N 29 154 - -
Cone13ag0065 251 Gene3D - 16 155 IPR036908 -
Cone13ag0065 251 FunFam Expansin 19 155 - -
Cone13ag0065 251 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576(InterPro)
Cone13ag0065 251 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576(InterPro)
Cone13ag0065 251 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576(InterPro)
Cone13ag0065 251 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576(InterPro)
Cone13ag0065 251 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576(InterPro)
Cone13ag0065 251 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0065 Cone-Chr13:406449 Cone5ag0142 Cone-Chr5:611803 1.69E-144 dispersed
Cone13ag0065 Cone-Chr13:406449 Cone13ag0949 Cone-Chr13:8148708 3.21E-149 wgd
Cone13ag0065 Cone-Chr13:406449 Cone19ag0067 Cone-Chr19:419124 5.97E-183 wgd
Cone13ag0065 Cone-Chr13:406449 Cone19ag0939 Cone-Chr19:7191805 3.35E-151 wgd
Cone13ag0065 Cone-Chr13:406449 Cone6ag0576 Cone-Chr6:2820883 9.10E-155 wgd
Cone13ag0065 Cone-Chr13:406449 Cone7ag0505 Cone-Chr7:2331133 1.45E-136 wgd
Cone13ag0065 Cone-Chr13:406449 Cone9ag0581 Cone-Chr9:2741577 1.29E-154 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0065 - - - 0.0