Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0073 ATGCTTATAAACGGTATTTATCCGGACATAACTGCATTTAATAAGCTTGTTCATGTTCTTTGTAAAAAGGGAGAAGTTGGAGAAAGTGAAAAGCTTCTCAACAAAGTGTTGAAAAGAGGAATATGTTTGAATTTGTTTACGTTCAATATTTTCATGCAAGGGTTTTGCAAGAAAGCTGCGATTAATGAGGCGGTCCGATTTATATGGAGTATAGCGAAGGGTATGATTCAAAATGCTGATAAGGTTCTTAACGAGGCTGTTTTCAAAAGGTTTGTTCCAAATGAATTTACTTATTGCTCGTTAATCAATGGCTTATGTCAAGAAGGGGAGTTAAATCAGGCCATGGCGGTATTTAATGAGGCCTTGGAGAAAGGGTTAAAGCCAAGTATTGTTTTTTATTACACATCGGTCAAAGGCTTGTCCAGGCAAGGGCTTATTTTGCAAGCCTTGCAACTCATGACTGATATGTCAGAAAACAGAGGCATCCCGGATATTTGGACTTACAATCTAGTCATGGACGGTCTTTGCAAGATGGGTTGCTTATCTGATGCCACTAAACTTATGAATGATGCGATTGATAGAGGCTACCTTCCTGATATATTCACTTTCAATACATTGATCGATGGGTATTGTAGGCAATTGAATCTGGATAGTGCAATTGAGATGATGAATATAATGTGGAGTCATGGTGTTATTCCTGATGTAATTACGTTCAATTCTGTACTCAACTGTCTTTGTAAAGCGTCTGGGCATAATGATCTAATGGACATTTTTCGGGAAATTATGGAGAATGGGTGTGTTCCAAATATCCTTACATACAATATACTGATTGAGAGTTTATGTAAAGCAAGGAAACCTGGTGAAGCTATGCAGTTGCTTGAGGAGATAAAGAAGAAGGGTTTGGAACCAGATATTGTTAATTTTGGCGCTTTGATTAGTGGGTTTTGCAACAATGGAGATTTAGACAAAGCCTATATGCTTTTTCGTAAAATGGGAGAAGGATATAACATTTCTCGTACCACAGCAACTTACAATATAATGATCAATGTGTTTTGTGAAAAGCTGGATGTTAATATGGCAGAGAAACTATATCATGAGATGAGTGAAAATAAGCTTTCTCCAGACAGTTATCCTTATTGCGTAATAATAGACGGGCTTTGTAAAACAGAGCAAATCGATCTTGGGTGTAAATTTCTCATGGAAAATATCGAAAAATCGTATGTTCCTTCTTTGACTACATTTGGGATGATTTTGAACTGTCTTTGTGTGAAGCATAGAGTCAATGAGGCGGTAGGAATAATCCGCCTTATGGTGCAGAATGGGATTGTTCTAGATATTGTGGATACAATTTTTGATGCTGATAAGAGACAGATAGCAGCACCTAAGATTCTTGTTGAAGAACTGTTGAAGAAGAGCCAGATAACTTATTATACTTATGAACTTCTATTTGACGGGATTAGAGATAAAAAAGTTAAGAAAAGGGTCCAGATTAACTGTTCTCGGGATTTGAGAATGAGAAGTTCAATGTTCATAAATTTGTAG 1542 36.71 MLINGIYPDITAFNKLVHVLCKKGEVGESEKLLNKVLKRGICLNLFTFNIFMQGFCKKAAINEAVRFIWSIAKGMIQNADKVLNEAVFKRFVPNEFTYCSLINGLCQEGELNQAMAVFNEALEKGLKPSIVFYYTSVKGLSRQGLILQALQLMTDMSENRGIPDIWTYNLVMDGLCKMGCLSDATKLMNDAIDRGYLPDIFTFNTLIDGYCRQLNLDSAIEMMNIMWSHGVIPDVITFNSVLNCLCKASGHNDLMDIFREIMENGCVPNILTYNILIESLCKARKPGEAMQLLEEIKKKGLEPDIVNFGALISGFCNNGDLDKAYMLFRKMGEGYNISRTTATYNIMINVFCEKLDVNMAEKLYHEMSENKLSPDSYPYCVIIDGLCKTEQIDLGCKFLMENIEKSYVPSLTTFGMILNCLCVKHRVNEAVGIIRLMVQNGIVLDIVDTIFDADKRQIAAPKILVEELLKKSQITYYTYELLFDGIRDKKVKKRVQINCSRDLRMRSSMFINL 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 443087 444792 - Conep13aG0007700.1 Cone13ag0073 450460

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0073 513 Gene3D Tetratricopeptide repeat domain 1 71 IPR011990 GO:0005515(InterPro)
Cone13ag0073 513 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 338 485 IPR050667 -
Cone13ag0073 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 234 268 IPR002885 -
Cone13ag0073 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 94 128 IPR002885 -
Cone13ag0073 513 Gene3D Tetratricopeptide repeat domain 72 146 IPR011990 GO:0005515(InterPro)
Cone13ag0073 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 9 43 IPR002885 -
Cone13ag0073 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 304 334 IPR002885 -
Cone13ag0073 513 Gene3D Tetratricopeptide repeat domain 334 505 IPR011990 GO:0005515(InterPro)
Cone13ag0073 513 Gene3D Tetratricopeptide repeat domain 147 253 IPR011990 GO:0005515(InterPro)
Cone13ag0073 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 340 374 IPR002885 -
Cone13ag0073 513 Pfam PPR repeat family 198 247 IPR002885 -
Cone13ag0073 513 Pfam PPR repeat family 8 57 IPR002885 -
Cone13ag0073 513 Pfam PPR repeat family 128 177 IPR002885 -
Cone13ag0073 513 Pfam PPR repeat family 340 388 IPR002885 -
Cone13ag0073 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 410 444 IPR002885 -
Cone13ag0073 513 Pfam PPR repeat 413 442 IPR002885 -
Cone13ag0073 513 NCBIfam pentatricopeptide repeat 272 305 IPR002885 -
Cone13ag0073 513 NCBIfam pentatricopeptide repeat 413 445 IPR002885 -
Cone13ag0073 513 NCBIfam pentatricopeptide repeat 12 44 IPR002885 -
Cone13ag0073 513 NCBIfam pentatricopeptide repeat 96 129 IPR002885 -
Cone13ag0073 513 NCBIfam pentatricopeptide repeat 343 376 IPR002885 -
Cone13ag0073 513 NCBIfam pentatricopeptide repeat 236 270 IPR002885 -
Cone13ag0073 513 NCBIfam pentatricopeptide repeat 201 235 IPR002885 -
Cone13ag0073 513 NCBIfam pentatricopeptide repeat 167 200 IPR002885 -
Cone13ag0073 513 NCBIfam pentatricopeptide repeat 308 331 IPR002885 -
Cone13ag0073 513 Gene3D Tetratricopeptide repeat domain 254 333 IPR011990 GO:0005515(InterPro)
Cone13ag0073 513 Pfam PPR repeat 91 120 IPR002885 -
Cone13ag0073 513 Pfam PPR repeat 299 331 IPR002885 -
Cone13ag0073 513 Pfam PPR repeat 264 296 IPR002885 -
Cone13ag0073 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 303 IPR002885 -
Cone13ag0073 513 SUPERFAMILY HCP-like 104 370 - -
Cone13ag0073 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 199 233 IPR002885 -
Cone13ag0073 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 164 198 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0073 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0073 Cone-Chr13:443087 Cone19ag0073 Cone-Chr19:444810 7.06E-54 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g544 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0073 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008959 0 1 0 1 1 1 0 1 1 0 1 1 1 1 2 1 1 3 1 1 1 1 1 1 1 1 0 3 1 1 30