Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0089 ATGGGATTTTCTCTTTTCATTCTTCTCATAATCCTTGCCATGCGTTTACTTTCCCAAACGGAAAGAGCGGCCAAGAAATACACTGAAGTGAAGAAACAAGTGGCTCAAGAATCAAGCACAAAGCTTATTACTTTCCATGGTGATCTTCCATACGGATCAAGTGACATTATTGAAAAGTTGGAGGCATTGGATGAGGAGGATGTTGTTGGTTCGGGTGGGTTTGGTACAGTTTATCGGATGGTCATGAATGATTGTGGAACTTTTGCGGTTAAAAAGATCGATAGGAGTAAGGAAGGTTCGGATCAAGTTTTCGAAAGGGAGTTGGAGATTTTGGGAAGCATCAAACATATTAATTTAGTGAACCTTAGGGGCTATTGCAAGCTTCCCACTTCCAAGCTTCTTATTTACGACTTTCTTGCAATGGGCAGCTTGGATGATTTGTTGCATGTGGAACGCGGATCGGAGGTGCAAGCATTGACATGGGGTGCACGCTTAAGGATTGCTCTTGGTTCGGCTCGAGGATTGGCCTATTTGCATCATGATTGCTGTCCAAAGATTATTCATCGAGATATAAAATCAAGCAACATTCTTCTTGACGAAACTTTGGAGCCTAGAGTGTCAGATTTCGGTCTAGCCAAGCTTCTTGTCGATGAGGATTCCCATGTCACAACTGTTGTTGCCGGCACTTTTGGTTATTTGGCACCAGAATACCTGCAAAGTGGGAGAGCAACTGAGAAGTCCGATGTTTATGGCTTTGGAGTTCTCTTACTTGAGTTAGTAACTGGGAAGAGACCGACTGATCCGGATTTTGTGGACAGAGGCTTGAATGTAGTTGGTTGGATGAACACATTTCTGAGAGAAAAGCAACTATTGGAAGAAGTAGTAGACAAGAGATGTAAAGATGCCGATCCCGAAAGCGTAGAAGCCATTCTCGAAATAGCGGGAAGGTGCACTGATGCAAACCCGGATAATCGGCCGATGATGAATGAAGTGTTGCAGATGATTGAGCAAGAGGTGATGTCACCTTGCCCGAGCGAATTTTACGAGTCTTATTCTGATCGTTCTTGA 1068 43.63 MGFSLFILLIILAMRLLSQTERAAKKYTEVKKQVAQESSTKLITFHGDLPYGSSDIIEKLEALDEEDVVGSGGFGTVYRMVMNDCGTFAVKKIDRSKEGSDQVFERELEILGSIKHINLVNLRGYCKLPTSKLLIYDFLAMGSLDDLLHVERGSEVQALTWGARLRIALGSARGLAYLHHDCCPKIIHRDIKSSNILLDETLEPRVSDFGLAKLLVDEDSHVTTVVAGTFGYLAPEYLQSGRATEKSDVYGFGVLLLELVTGKRPTDPDFVDRGLNVVGWMNTFLREKQLLEEVVDKRCKDADPESVEAILEIAGRCTDANPDNRPMMNEVLQMIEQEVMSPCPSEFYESYSDRS 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 556162 557816 - Conep13aG0009400.1 Cone13ag0089 450476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0089 355 Gene3D Transferase(Phosphotransferase) domain 1 139 345 - -
Cone13ag0089 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 186 198 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone13ag0089 355 ProSitePatterns Protein kinases ATP-binding region signature. 69 92 IPR017441 GO:0005524(InterPro)
Cone13ag0089 355 ProSiteProfiles Protein kinase domain profile. 63 340 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag0089 355 PANTHER OS01G0750732 PROTEIN 8 341 IPR050885 -
Cone13ag0089 355 Gene3D Phosphorylase Kinase; domain 1 19 138 - -
Cone13ag0089 355 SMART serkin_6 63 340 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag0089 355 Pfam Protein kinase domain 65 334 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag0089 355 Coils Coil 17 37 - -
Cone13ag0089 355 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 139 347 - -
Cone13ag0089 355 SUPERFAMILY Protein kinase-like (PK-like) 51 335 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0089 Cone-Chr13:556162 Cone9ag0880 Cone-Chr9:4293527 2.14E-141 dispersed
Cone9ag0730 Cone-Chr9:3477552 Cone13ag0089 Cone-Chr13:556162 6.24E-18 dispersed
Cone11ag0141 Cone-Chr11:632792 Cone13ag0089 Cone-Chr13:556162 1.08E-55 wgd
Cone13ag0089 Cone-Chr13:556162 Cone19ag0092 Cone-Chr19:526011 5.23E-234 wgd
Cone13ag0089 Cone-Chr13:556162 Cone2ag0559 Cone-Chr2:3175328 2.01E-16 wgd
Cone13ag0089 Cone-Chr13:556162 Cone7ag0531 Cone-Chr7:2468377 1.63E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81998 PF13041 PPR_2 5.50E-08 CL0020 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0089 - - - 0.0